JPsnpHou00422, JPsnpHou00422 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00422
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/C
5' Flanking Sequence	GGCATTTTGGCACATTCCTTGGCACACATTGCATCCTGGTTGAAGGTGAAGGAAGTTGAC CACTCAGGGGACGGAATTGAGTCCATCATCAACAAAGTGGAGCACTACCTTGCTGAAGGA AAGATAGCCGAAGCAGCAGAGGCACTTGAAGAAGGAGTGAAAGGCACCCAAGCAATGGAA GTAGTGAGTGAATGGGTGAAGCGTGCTAGGAATAGGGCTATCACAGACCAAGCTCTAACG CTTCTCCAATCATATGCTACTTCTATCAGCGTTACATAAAGTCCATTTCTTGACTACACA TACCGAGCCTACCATGTTAAAATGGAGGGGCTAAC
3' Flanking Sequence	CTTTGAGAGATTTGTAAAATGCCATTCGATCTAGTGTTGTAGTTCTCCATAATTGTTTAA ACAAGCGAATCATCCAGTTCAATGTGTTACCAGCAGAAAGAGTGAAAATGTCAGTTCTTT TTCATGCAGGGTCACTGCCATGGGAAGTTTCCGGATCGTCCCTTTGAGTGGCATTTTGTT TCAGTTGCTACCAAGTTTTGCATAGTCAGTGCGTTAGGACATTCTTGAAACAGAAGCGAC CAAGTTTGTGCACAAGATAAATAAATGAAATTGTTCTCATTTTGAGTAACTATGCTATTT TGAAC
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 336

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG1	N/A	48.99	JPsnpHou00422	View

Sequence

>JPsnpHou00422 ID=JPsnpHou00422; Name=JPsnpHou00422; organism=Pyrus pyrifolia; type=genetic_marker; length=641bp
GGCATTTTGGCACATTCCTTGGCACACATTGCATCCTGGTTGAAGGTGAA
GGAAGTTGACCACTCAGGGGACGGAATTGAGTCCATCATCAACAAAGTGG
AGCACTACCTTGCTGAAGGAAAGATAGCCGAAGCAGCAGAGGCACTTGAA
GAAGGAGTGAAAGGCACCCAAGCAATGGAAGTAGTGAGTGAATGGGTGAA
GCGTGCTAGGAATAGGGCTATCACAGACCAAGCTCTAACGCTTCTCCAAT
CATATGCTACTTCTATCAGCGTTACATAAAGTCCATTTCTTGACTACACA
TACCGAGCCTACCATGTTAAAATGGAGGGGCTAACmCTTTGAGAGATTTG
TAAAATGCCATTCGATCTAGTGTTGTAGTTCTCCATAATTGTTTAAACAA
GCGAATCATCCAGTTCAATGTGTTACCAGCAGAAAGAGTGAAAATGTCAG
TTCTTTTTCATGCAGGGTCACTGCCATGGGAAGTTTCCGGATCGTCCCTT
TGAGTGGCATTTTGTTTCAGTTGCTACCAAGTTTTGCATAGTCAGTGCGT
TAGGACATTCTTGAAACAGAAGCGACCAAGTTTGTGCACAAGATAAATAA
ATGAAATTGTTCTCATTTTGAGTAACTATGCTATTTTGAAC