Nootka | GDR

Germplasm Overview


Name	Nootka
Alias	N/A
Institutional Name	Nootka
Sample Name	EY0052929_CLT2_CLT2_snapper_rubus.cel
GRIN ID	PI 553372
Type	Cultivar
Species	Rubus idaeus
Description	Nootka
Origin Country	N/A
Origin Detail	N/A
Pedigree	N/A
Maternal Parent	N/A
Paternal Parent	N/A
Maternal Parent of	N/A
Paternal Parent of	N/A
Phenotypic Data	[view all 58]
SSR Genotype Data	N/A
SNP Genotype Data	[view all 12501]
Map	N/A
DNA Library	N/A
Sequence	N/A
Comments	N/A
Reference	Montanari S, Deng C, Koot E, Bassil NV, Zurn JD, Morrison-Whittle P, Worthington ML, Aryal R, Ashrafi H, Pradelles J, Wellenreuther M, Chagné D. A multiplexed plant-animal SNP array for selective breeding and species conservation applications.. G3 (Bethesda, Md.). 2023 Aug 11.

Publications


Year	Publication
2023	Montanari S, Deng C, Koot E, Bassil NV, Zurn JD, Morrison-Whittle P, Worthington ML, Aryal R, Ashrafi H, Pradelles J, Wellenreuther M, Chagné D. A multiplexed plant-animal SNP array for selective breeding and species conservation applications. G3 (Bethesda, Md.). 2023 Aug 11. DOI: 10.1093/g3journal/jkad170

Snp Genotype Data

Total 12,501 records

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#	Dataset	Marker Name	Allele	Genotype
1	Rubus-SNP array validation panel-Montanari-2023	Rub_AX-115251414	Y	C\|C
2	Rubus-SNP array validation panel-Montanari-2023	Rub_AX-159144814	Y	C\|C
3	Rubus-SNP array validation panel-Montanari-2023	Rub_AX-159212454	R	A\|A
4	Rubus-SNP array validation panel-Montanari-2023	Rub_AX-166513670	Y	T\|T
5	Rubus-SNP array validation panel-Montanari-2023	Rub_AX-184752440	M	C\|C
6	Rubus-SNP array validation panel-Montanari-2023	Rub_AX-208713277	Y	C\|C
7	Rubus-SNP array validation panel-Montanari-2023	Rub_AX-226069626	R	G\|G
8	Rubus-SNP array validation panel-Montanari-2023	Rub_AX-566096548	R	A\|A
9	Rubus-SNP array validation panel-Montanari-2023	Rub_AX-566096550	R	A\|A
10	Rubus-SNP array validation panel-Montanari-2023	Rub_AX-566096555	R	G\|G
11	Rubus-SNP array validation panel-Montanari-2023	Rub_AX-566096558	Y	T\|T
12	Rubus-SNP array validation panel-Montanari-2023	Rub_AX-566096559	M	C\|C
13	Rubus-SNP array validation panel-Montanari-2023	Rub_AX-566096560	R	G\|G
14	Rubus-SNP array validation panel-Montanari-2023	Rub_AX-566096584	Y	C\|C
15	Rubus-SNP array validation panel-Montanari-2023	Rub_AX-566096589	R	A\|A
16	Rubus-SNP array validation panel-Montanari-2023	Rub_AX-566096590	K	G\|G
17	Rubus-SNP array validation panel-Montanari-2023	Rub_AX-566096592	Y	T\|C
18	Rubus-SNP array validation panel-Montanari-2023	Rub_AX-566096597	Y	C\|C
19	Rubus-SNP array validation panel-Montanari-2023	Rub_AX-566096602	R	A\|A
20	Rubus-SNP array validation panel-Montanari-2023	Rub_AX-566096606	R	A\|A
21	Rubus-SNP array validation panel-Montanari-2023	Rub_AX-566096610	R	G\|G
22	Rubus-SNP array validation panel-Montanari-2023	Rub_AX-566096611	R	G\|G
23	Rubus-SNP array validation panel-Montanari-2023	Rub_AX-566096612	R	A\|A
24	Rubus-SNP array validation panel-Montanari-2023	Rub_AX-566096618	R	G\|G
25	Rubus-SNP array validation panel-Montanari-2023	Rub_AX-566096621	Y	C\|C

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Cross References

External references for this accession


Database	Accession
GRIN	PI 553372

Phenotypic Data

Total 58 trait scores

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#	Dataset	Descriptor	Value
1	RUBUS.CORE.1998	CORE	0
2	RUBUS.CORE.1998	CORE	0
3	RUBUS.CORVALLIS.86	BLOOM1	120
4	RUBUS.CORVALLIS.86	BLOOM1	120
5	RUBUS.CORVALLIS.86	RIPE1	162
6	RUBUS.CORVALLIS.86	RIPE1	162
7	RUBUS.CORVALLIS.87	BLOOM1	122
8	RUBUS.CORVALLIS.87	BLOOM1	122
9	RUBUS.CORVALLIS.87	FLOWERDENS	6
10	RUBUS.CORVALLIS.87	FLOWERDENS	6
11	RUBUS.CORVALLIS.87	FRUITSIZE	2.1
12	RUBUS.CORVALLIS.87	FRUITSIZE	2.1
13	RUBUS.CORVALLIS.87	FULLBLOOM	129
14	RUBUS.CORVALLIS.87	FULLBLOOM	129
15	RUBUS.CORVALLIS.87	RIPE1	178
16	RUBUS.CORVALLIS.87	RIPE1	178
17	RUBUS.CORVALLIS.STD	FLAVOR	7
18	RUBUS.CORVALLIS.STD	FLAVOR	7
19	RUBUS.CORVALLIS.STD	FRUITCOLOR	dr
20	RUBUS.CORVALLIS.STD	FRUITCOLOR	dr
21	RUBUS.CORVALLIS.STD	LEAFLETNUM	5
22	RUBUS.CORVALLIS.STD	LEAFLETNUM	5
23	RUBUS.CORVALLIS.STD	SPINEHIGH	4
24	RUBUS.CORVALLIS.STD	SPINEHIGH	4
25	RUBUS.CORVALLIS.STD	SPINELOW	4

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