Pav-HB-01-5

Haplotype Block Overview

Name	Pav-HB-01-5
Species	Prunus avium
Stock Haplotype	[view all 516]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Summit	2
Lambert	2
Regina	2
Ambrunes	4 6
Lapins	2 5
Stella	2
Sweetheart	5
Van	2 5
Schneiders	2
Bing	2
Rainier	2 5
5.18.25-001	2 5
5.3.1-001	2 5
5.3.1-002	2
Benton	2 4
Brooks	2 5
Cashmere	2 5
Chelan	2 4
Chinook	2
Cowiche	4 7
Gil Peck	2 7
Glacier	2 5
Kiona	2
Mildew Immune Mazzard #17	8
Mildew Immune Mazzard #23	8
Newstar	2
NY 54	8 9
PMR-1	2 3
Sato Nashiki	2 5
Schmidt	2 3
Selah	2 5
Tieton	2 4
Ulster	2 7
Vic	2 3
Windsor	5 7
23_1_47	2 9
23_2_46	3 8
23_3_24	2 9
23_3_28	2 9
23_3_40	3 9
23_5_17	3 9
23_8_24	3 8
23_8_45	3 9
4.10.19-001	2 5
4.10.19-002	2 5
4.10.19-003	2
4.10.19-004	4 5
4.10.19-005	2 5
4.10.19-006	2
4.10.19-008	4 5
4.10.19-009	2 5
4.10.19-010	2 5
4.10.19-011	2 5
4.10.2-001	4 5
4.10.2-002	2 6
4.10.2-004	5 6
4.10.2-005	2 4
4.10.2-006	2 6
4.10.2-008	5
4.10.2-009	4 5
4.10.2-010	2 6
4.10.5-001	2
4.10.5-002	4 5
4.10.5-003	2
4.10.5-004	2 5
4.10.5-005	2 4
4.10.5-006	4 5
4.10.5-015	2 5
4.10.5-016	2
4.10.5-018	2
4.10.5-019	2
4.10.5-020	2 4
4.10.5-028	2
4.10.5-029	2 4
4.10.5-030	2
4.16.2-001	2 4
4.18.15-001	2
4.18.15-002	2
4.18.15-003	2 5
4.18.15-004	2
4.18.15-005	2
4.18.15-006	2
4.18.15-007	2
4.18.15-009	2
4.18.15-011	2
4.18.15-012	2 5
4.18.15-013	2 5
4.18.15-014	2 5
4.18.15-015	2 5
4.18.15-016	2 5
4.18.15-028	2 5
4.18.15-030	2
4.18.15-039	2 5
4.18.15-040	2
4.18.15-043	2 5
4.18.2-005	4 5
4.18.2-007	5 6
4.18.2-008	2 6
4.18.2-010	4 5
4.18.2-015	2 6
4.18.2-016	2
4.18.2-018	5
4.18.2-019	5 6
4.18.2-020	4 5
4.18.2-024	4 5
4.18.2-027	5 6
4.18.2-028	2 6
5.12.5-005	2 4
5.12.5-007	2 4
5.12.5-008	2
5.12.5-009	2
5.12.5-010	2
5.12.5-011	2 4
5.12.5-019	2 7
5.12.5-020	2
5.12.5-021	2 4
5.12.5-022	2
5.14.15-003	2 5
5.14.15-004	2 5
5.14.15-005	2
5.14.15-006	2 5
5.14.15-007	2 5
5.14.15-013	2 5
5.14.15-014	2
5.14.15-015	2
5.14.15-016	2 5
5.14.15-017	2
5.14.15-018	2 5
5.14.15-019	2 5
5.14.15-020	2
5.14.23-003	4 5
5.14.23-004	4 5
5.14.23-006	2 5
5.23.15-001	2 4
5.23.15-002	2 4
5.23.2-001	2 4
5.23.2-002	2
5.23.2-003	2 6
5.28.15-001	2 7
5.28.15-002	2 7
5.28.15-003	2 7
5.28.15-004	2 7
5.28.15-005	2 7
5.28.15-006	2 4
5.28.15-007	2 7
5.28.15-008	2 4
5.28.15-009	2 4
5.28.15-010	2 4
5.28.15-011	2 7
5.28.15-012	2 4
5.28.15-013	2 4
5.28.37-001	2 7
5.28.37-002	2 4
5.28.37-003	2 4
5.28.37-004	2 7
5.28.37-005	2 4
5.28.37-008	2 7
5.28.37-009	2 7
5.28.37-010	2 4
5.28.37-011	2 7
5.28.37-012	2 5
5.4.15-004	2
5.4.15-005	2
6.14.2-006	5 6
6.14.2-007	2 4
6.14.2-008	2 6
6.14.2-009	5
6.14.2-010	4 5
6.14.2-011	4 5
6.14.2-012	2 6
6.14.2-013	2 5
6.14.2-015	2 6
6.29.49-001	3 8
6.29.49-002	2 8
6.29.49-003	3 8
6.29.49-005	3 8
6.29.49-007	3 8
6.29.49-008	2 8
6.30.49-009	5 8
6.30.49-011	5 8
6.30.49-012	2 8
6.30.49-013	5 8
6.30.49-014	5 8
6.30.49-015	2 8
6.30.49-016	2 8
6.30.49-017	5 8
6.31.49-003	3 8
6.31.49-004	5 8
6.31.49-005	3 8
6.31.49-006	5 8
6.31.49-007	3 8
6.31.49-009	3 8
6.31.49-010	5 8
6.31.49-011	3 8
6.31.49-012	5 8
6.31.49-013	3 8
6.31.49-014	5 8
6.31.49-015	5 8
6.32.49-032	2 8
6.32.49-033	2 8
6.32.49-034	2 8
6.32.49-035	2 8
6.32.49-037	2 8
6.32.49-038	2 8
6.32.49-039	5 8
6.32.49-040	2 8
6.32.49-041	5 8
6.33.49-001	5 8
6.33.49-002	5 8
6.33.49-003	5 8
6.33.49-004	5 8
23-01-11	3 9
23-02-34	2 9
23-03-13	2 8
23-03-23	3 8
23-03-48	2 9
23-03-56	2 9
23-06-04	3 9
23-06-23	2 9
23-07-26	2 9
23-08-55	3 9
Dzherlo	2 5
Olympus	2 5
PC 7146-16	2 4
Kordia	2
Cristobalina	2 3
Vittoria	2 7
FR20T047	2 4
FR13T004	2 5
FR13T071	2 3
FR31T121	2 7
FR32T087	2 5
FR32T088	2
FR32T093	2 5
FR20T045	2 4
FR26T117	2
FR29T115	2 8
PC 9816-005	2 3
PC 9816-023	3 5
PC 9816-041	2 5
PC 9816-059	2
PC 9816-083	2 5
PC 9816-103	3 5
PC 9816-105	3 5
PC 9816-106	3 5
PC 9816-112	3 5
PC 9816-078	3 5
PC 9819-005	2
PC 9819-031	2 3
PC 9819-038	2 3
PC 9814-025	2
PC 9814-078	2 3
PC 9814-103	2 3
PC 9814-105	2 3
PC 9814-026	2 3
PC 9814-028	2
PC 9814-055	2 3
PC 9814-062	2
PC 9814-063	2
PC 9814-068	2 3
PC 9814-071	2
PC 9814-076	2 3
PC 9819-034	2
PC 9816-042	2
Emperor Francis	2 3
Black Republican	2
Krupnoplodnaya	2 5
Early Burlat	4 5
Venus	2 5
Moreau	4 5
Index	2
Sunburst	2 3
6.14.6-008	4 5
FR02T062	2 4
FR02T063	2 4
5.14.23.001	4 5
6.16.44-005	2 4
6.23.44-001	4
6.23.44-002	4
6.23.55-006	2 4
6.23.55-010	2
6.23.6-002	2
6.23.6-003	2 4
6.16.44-001	2 5
6.16.44-002	2
6.16.44-003	2 5
6.28.44-001	2 4
6.28.44-002	2 7
6.4.44-003	2
6.4.44-004	2
6.4.44-006	2
6.4.44-007	2
6.4.44-009	2
6.4.44-010	2
6.4.45-001	2
4.3.1-004	2
4.3.1-009	2
5.3.1-008	2
5.3.1-010	2
5.3.1-015	2
5.3.1-016	2
5.3.1-017	2
6.30.50-002	2 5
6.14.6-003	4 5
6.28.45-001	2 7
FR09T089	2 4
6.12.45-001	2
6.12.45-002	2
6.12.45-003	2 3
6.12.45-004	2 3
6.12.45-005	2 3
6.12.45-007	2
6.12.45-008	2
6.12.45-009	2
6.12.45-010	2
6.14.45-001	2 5
6.14.45-003	3 5
6.14.45-004	2 5
6.14.45-005	2 5
6.14.45-006	2 5
6.14.45-007	2 5
6.14.45-008	2 5
6.14.45-009	3 5
6.28.45-002	2 7
6.14.6-001	2 5
6.14.6-002	5
6.14.6-004	5
6.14.6-005	2 5
6.14.6-006	2 5
6.14.6-007	2 5
6.14.6-010	2 5
6.23.6-004	4
6.23.6-005	4 5
6.23.6-007	2 4
6.23.6-008	4 5
6.23.6-012	2
6.28.44-005	2 7
6.28.55-006	3 7
6.28.55-007	5
6.23.6-001	4 5
6.23.6-006	4 7
6.23.6-009	13 4
6.4.44-001	2
6.4.6-001	5
FR04T029	2 5
FR08T074	3 5
6.28.55-002	2 7
FR01T050	2 5
5.10.25-001	2 5
5.10.25-002	2
5.16.25-002	2
5.16.25-003	2
5.16.25-004	2
5.16.25-009	2
5.16.25-010	5
5.16.25-013	2 5
5.18.25-005	2 5
4.3.1-008	2
5.3.1-005	2 5
FR09T037	3 5
6.29.50-001	3 8
6.29.50-002	2 8
6.29.50-003	3 8
6.29.50-004	2 8
6.29.50-005	3 8
6.29.50-007	2 8
6.29.50-008	3 8
6.30.50-004	5 8
6.30.50-005	2 8
6.31.50-001	5 8
6.31.50-002	3 8
6.31.50-003	3 8
6.31.50-004	3 8
6.31.50-005	5 8
6.32.50-001	5 8
6.32.50-002	2 8
6.32.50-003	2 8
6.32.50-004	5 8
6.32.50-005	5 8
6.32.50-006	5 8
6.32.50-007	2 8
6.32.50-008	2 8
6.33.50-001	5 8
5.10.26-001	2 4
5.10.26-002	2 5
5.10.26-003	5
5.10.26-004	4 5
5.10.26-005	2 5
5.10.26-007	2 4
5.10.26-008	2 4
5.13.26-001	3 5
5.13.26-002	2 4
5.13.26-003	3 4
5.13.26-004	2 4
5.13.26-005	3 5
5.13.26-006	2 4
5.13.26-007	3 4
5.13.26-009	3 4
5.14.26-001	4 5
5.14.26-002	2 4
5.14.26-003	5
5.16.26-001	4 5
5.16.26-002	4 5
5.16.26-003	4 5
5.16.40-001	4 5
5.18.26-001	5
5.18.26-002	5
FR06T097	5
FR07T026	2 5
6.28.44-003	2 4
AA	2
PC 9816-069	2 3
PC 9816-079	2 5
PC 9816-096	3 5
PC 9816-104	3 5
PC 9816-114	2 5
PC 9817-097	2 5
4.18.15-010	2
4.18.15-042	2 5
4.18.15-047	2
4.18.15-048	2 5
4.3.1-003	2
4.3.1-005	2
4.3.1-006	2
4.3.1-007	2
5.3.1-009	2
5.3.1-011	2
5.3.1-012	2
5.3.1-013	2
5.3.1-014	2
5.4.15-001	2
5.4.15-002	2
5.4.15-003	2
FR01T070	2 5
FR49T083	2 5
5.16.17-003	2 5
5.16.25-006	2 5
5.16.25-008	2 5
5.16.25-012	2
5.20.6-001	2 4
6.16.44-008	5
6.4.45-003	2 5
6.4.6-004	2 5
6.4.6-006	2
6.4.6-007	2 5
6.4.6-008	2 5
6.4.6-009	2
5.16.17-001	3 5
5.16.17-004	2 5
6.14.17-001	2 3
6.14.17-002	2 3
6.14.17-003	2 3
6.14.17-004	2
6.14.17-005	2 3
FR02T024	2
4.14.17-001	5
5.13.26-008	2
6.28.44-004	4
4.3.1-001	2 5
5.3.1-007	2 5
5.3.1-018	2 5
5.10.40-001	2 5
5.10.40-002	5
5.10.40-003	2 5
5.10.40-004	2
5.10.40-005	2 5
5.10.40-008	2
5.10.40-009	5
5.10.40-010	2 5
5.10.40-011	2 5
5.10.40-012	5
5.10.40-013	2 5
5.10.40-014	2 5
5.10.40-015	5
5.10.40-016	2 5
5.10.40-017	2 5
5.13.40-002	2 5
5.13.40-003	2
5.13.40-004	2 5
5.16.40-003	5
5.16.40-004	2 5
6.30.50-001	2
6.30.50-003	2
6.10.55-001	5 7
6.10.55-002	2 5
6.10.55-003	5 7
6.10.55-004	2
6.10.55-005	2
6.10.55-006	5 7
6.10.55-007	2 5
6.10.55-008	2 7
6.10.55-009	2 5
6.10.55-010	2 5
6.16.55-001	2
6.16.55-002	2 7
6.23.17-001	2
6.23.55-002	2
6.23.55-005	4 7
6.23.55-007	4 7
6.23.55-008	2 7
6.28.55-001	2 7
6.28.55-003	2 7
6.28.55-004	4 7
6.28.55-005	7
5.13.40-001	4 7
5.16.25-001	2 3
5.18.25-004	5
5.3.1-006	2
6.16.44-004	2
6.16.44-006	2 5
6.16.44-007	5 7
6.16.44-009	3 5
6.23.17-003	2
6.23.17-004	2 4
Bertiolle	2
Napoleon	2

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Pav-HB-01-5	Sweet Cherry-RosBREED-1.6K-2019	1	15.86	17.84

Projects


Project Name
RosBREED_Sweet_Cherry_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16
RosBREED_snp_sweet_cherry_Pp1_07074495	A	B	B	A	A	A	B	A	A	-	-	A	B	A	B
RosBREED_snp_sweet_cherry_Pp1_07089244	B	A	A	B	B	B	A	B	B	-	-	B	A	B	A
RosBREED_snp_sweet_cherry_Pp1_07130958	A	B	B	B	A	B	B	B	-	B	A	A	A	B	B
RosBREED_snp_sweet_cherry_Pp1_07234788	A	A	A	A	A	A	A	B	A	A	A	A	A	A	A
RosBREED_snp_sweet_cherry_Pp1_07328678	B	A	A	A	B	A	B	B	-	A	B	A	A	B	B
RosBREED_snp_sweet_cherry_Pp1_07374161	B	A	B	B	A	A	A	A	B	A	B	B	B	B	B

Alignments

Feature Name	Type	Location	Analysis
Pp01	chromosome	Pp01:7523859..7823523.	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)