Pav-HB-01-2

Haplotype Block Overview
Name Pav-HB-01-2
Species Prunus avium
Stock Haplotype [view all 517]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Summit 2 5
Lambert 5
Regina 2
Ambrunes 7 8
Lapins 2 5
Stella 5
Sweetheart 2
Van 2 5
Schneiders 2
Bing 4 5
Rainier 2 4
5.18.25-001 2
5.3.1-001 2
5.3.1-002 2 5
Benton 5 6
Brooks 10 4
Cashmere 2 5
Chelan 2 5
Chinook 4
Cowiche 11 6
Gil Peck 4 5
Glacier 2 5
Kiona 5
Mildew Immune Mazzard #17 14 15
Mildew Immune Mazzard #23 14 16
Newstar 5
NY 54 17 18
PMR-1 19 5
Sato Nashiki 20 5
Schmidt 19 21
Selah 2 5
Tieton 10 5
Ulster 4 5
Vic 19 4
Windsor 11 2
23_1_47 17 2
23_2_46 18 3
23_3_24 17
23_3_28 17 2
23_3_40 17 3
23_5_17 17 3
23_8_24 3
23_8_45 17
4.10.19-001 2 5
4.10.19-002 5
4.10.19-003 5
4.10.19-004 2
4.10.19-005 2
4.10.19-006 5
4.10.19-008 10
4.10.19-009 2 5
4.10.19-010 2 5
4.10.19-011 2 5
4.10.2-001 2 8
4.10.2-002 5 7
4.10.2-004 5 7
4.10.2-005 5 8
4.10.2-006 5
4.10.2-008 2
4.10.2-009 2 8
4.10.2-010 5
4.10.5-001 5
4.10.5-002 2 5
4.10.5-003 5
4.10.5-004 2 5
4.10.5-005 5
4.10.5-006 2
4.10.5-015 2 5
4.10.5-016 2 5
4.10.5-018 2 5
4.10.5-019 5
4.10.5-020 2 5
4.10.5-028 5
4.10.5-029 2 5
4.10.5-030 2
4.16.2-001 2 8
4.18.15-001 2 5
4.18.15-002 2 5
4.18.15-003 2
4.18.15-004 2 5
4.18.15-005 2 5
4.18.15-006 2 5
4.18.15-007 5
4.18.15-009 2 5
4.18.15-011 2 5
4.18.15-012 2
4.18.15-013 2
4.18.15-014 2
4.18.15-015 2 5
4.18.15-016 2
4.18.15-028 2
4.18.15-030 2
4.18.15-039 2
4.18.15-040 2 5
4.18.15-043 2
4.18.2-005 2 8
4.18.2-007 2 7
4.18.2-008 5
4.18.2-010 2
4.18.2-015 5 7
4.18.2-016 5 7
4.18.2-018 2 7
4.18.2-019 2
4.18.2-020 2 8
4.18.2-024 2 8
4.18.2-027 5 7
4.18.2-028 5 7
5.12.5-005 2 5
5.12.5-007 2 5
5.12.5-008 5
5.12.5-009 5
5.12.5-010 5
5.12.5-011 2 5
5.12.5-019 5 74
5.12.5-020 5
5.12.5-021 2 5
5.12.5-022 2 5
5.14.15-003 2
5.14.15-004 2
5.14.15-005 2 4
5.14.15-006 2
5.14.15-007 2
5.14.15-013 2
5.14.15-014 2 4
5.14.15-015 2 4
5.14.15-016 2 4
5.14.15-017 2 4
5.14.15-018 2
5.14.15-019 2
5.14.15-020 2
5.14.23-003 2 5
5.14.23-004 2 6
5.14.23-006 2 5
5.23.15-001 6
5.23.15-002 2 6
5.23.2-001 5 8
5.23.2-002 5 8
5.23.2-003 5 7
5.28.15-001 11 2
5.28.15-002 11 2
5.28.15-003 2 6
5.28.15-004 11 2
5.28.15-005 2
5.28.15-006 2
5.28.15-007 11 2
5.28.15-008 2 6
5.28.15-009 2 6
5.28.15-010 2 6
5.28.15-011 2
5.28.15-012 2 6
5.28.15-013 2 6
5.28.37-001 2
5.28.37-002 5
5.28.37-003 2 6
5.28.37-004 11 2
5.28.37-005 2 6
5.28.37-008 11 2
5.28.37-009 6
5.28.37-010 5 6
5.28.37-011 11 5
5.28.37-012 2
5.4.15-004 2 4
5.4.15-005 2 5
6.14.2-006 2 7
6.14.2-007 4 8
6.14.2-008 4
6.14.2-009 2
6.14.2-010 2 8
6.14.2-011 2 8
6.14.2-012 4
6.14.2-013 2 4
6.14.2-015 4 7
6.29.49-001 14 19
6.29.49-002 15 4
6.29.49-003 15 19
6.29.49-005 15 19
6.29.49-007 14 19
6.29.49-008 4
6.30.49-009 15
6.30.49-011 15 2
6.30.49-012 15 19
6.30.49-014 14 2
6.30.49-015 19
6.30.49-016 15 19
6.30.49-017 14 2
6.31.49-003 15 5
6.31.49-004 15 4
6.31.49-005 15 5
6.31.49-006 14 4
6.31.49-007 5
6.31.49-009 15 5
6.31.49-010 14 4
6.31.49-011 5
6.31.49-012 14 4
6.31.49-013 5
6.31.49-014 14 4
6.31.49-015 14 4
6.32.49-032 14 5
6.32.49-033 15 2
6.32.49-034 15 5
6.32.49-035 14 5
6.32.49-037 5
6.32.49-038 15 5
6.32.49-039 14 5
6.32.49-040 14
6.32.49-041 15 2
6.33.49-001 2
6.33.49-002 15 2
6.33.49-003 15 5
6.33.49-004 15 2
23-01-11 17 3
23-02-34 17 2
23-03-13 18 2
23-03-23 18 3
23-03-48 17 2
23-03-56 17 2
23-06-04 17 3
23-06-23 17 2
23-07-26 17 2
23-08-55 17 3
Dzherlo 2
Olympus 2 5
PC 7146-16 5 6
Kordia 13 2
Cristobalina 12 2
Vittoria 25 26
FR20T047 2 6
FR13T004 2 4
FR13T071 19 5
FR31T121 5
FR32T087 2 4
FR32T088 2 9
FR32T093 2 4
FR20T045 2
FR26T117 5
FR29T115 16 5
PC 9816-005 19 4
PC 9816-023 19 2
PC 9816-041 2 5
PC 9816-059 4 5
PC 9816-083 2 5
PC 9816-103 2 5
PC 9816-105 19 2
PC 9816-106 19 2
PC 9816-112 19 2
PC 9816-078 19 5
PC 9819-005 5
PC 9819-031 19 2
PC 9819-038 19 5
PC 9814-025 4 5
PC 9814-078 19 5
PC 9814-103 19
PC 9814-105 19 5
PC 9814-026 19 5
PC 9814-028 5
PC 9814-055 19 4
PC 9814-062 5
PC 9814-063 4 5
PC 9814-068 19 5
PC 9814-071 5
PC 9814-076 19 5
PC 9819-034 4 5
PC 9816-042 4 5
Emperor Francis 2 3
Black Republican 2 5
Krupnoplodnaya 2
Early Burlat 10 2
Venus 2 4
Moreau 2 6
Index 4 5
Sunburst 3 5
6.14.6-008 2
FR02T062 5 8
FR02T063 5 8
5.14.23.001 2 6
6.16.44-005 5 6
6.23.44-001 6
6.23.44-002 6
6.23.55-006 5 6
6.23.55-010 5
6.23.6-002 5
6.23.6-003 5 6
6.16.44-001 2 9
6.16.44-002 5 9
6.16.44-003 2 4
6.28.44-001 6 9
6.28.44-002 4
6.4.44-003 4
6.4.44-004 4 5
6.4.44-006 4 9
6.4.44-007 9
6.4.44-009 5 9
6.4.44-010 4 5
6.4.45-001 9
4.3.1-004 13 4
4.3.1-009 13 5
5.3.1-008 13 4
5.3.1-010 2 5
5.3.1-015 13 5
5.3.1-016 13 5
5.3.1-017 2 5
6.30.50-002 2 4
6.14.6-003 2
6.28.45-001 11
FR09T089 2 5
6.12.45-001 2 5
6.12.45-002 2 5
6.12.45-003 12 5
6.12.45-004 12 5
6.12.45-005 12 5
6.12.45-007 12 5
6.12.45-008 2 5
6.12.45-009 2 5
6.12.45-010 2 5
6.14.45-001 2
6.14.45-003 12 2
6.14.45-004 2
6.14.45-005 2
6.14.45-006 2
6.14.45-007 2
6.14.45-008 2
6.14.45-009 12 2
6.28.45-002 11 2
6.14.6-001 2 4
6.14.6-002 2
6.14.6-004 2
6.14.6-005 2
6.14.6-006 2
6.14.6-007 2
6.14.6-010 2
6.23.6-004 2
6.23.6-005 2 6
6.23.6-007 2 6
6.23.6-008 2 5
6.23.6-012 2 5
6.28.44-005 11 5
6.28.55-006 11 19
6.28.55-007 11 2
6.23.6-001 2 5
6.23.6-006 11 6
6.23.6-009 5 6
6.4.44-001 26 4
6.4.6-001 2
FR04T029 30 5
FR08T074 19 2
6.28.55-002 11
FR01T050 2
5.10.25-001 2
5.10.25-002 2 5
5.16.25-002 2 5
5.16.25-003 2 5
5.16.25-004 2 5
5.16.25-005 2
5.16.25-009 2 5
5.16.25-010 2
5.16.25-013 2
5.18.25-005 2
4.3.1-008 2 5
5.3.1-005 2
FR09T037 2 5
6.29.50-001 14 19
6.29.50-002 16 4
6.29.50-003 14 19
6.29.50-004 4
6.29.50-005 16
6.29.50-007 14 4
6.29.50-008 16 19
6.30.50-004 2
6.30.50-005 14 19
6.31.50-001 16 4
6.31.50-002 14 4
6.31.50-003 14 4
6.31.50-004 14 5
6.31.50-005 14 4
6.32.50-001 16 2
6.32.50-002 14 5
6.32.50-003 5
6.32.50-004 16 2
6.32.50-005 14 2
6.32.50-006 14 2
6.32.50-007 16 5
6.32.50-008 16
6.33.50-001 14 2
5.10.26-001 6
5.10.26-002 2 5
5.10.26-003 2 5
5.10.26-004 2 6
5.10.26-005 2 5
5.10.26-007 5 6
5.10.26-008 2 5
5.13.26-001 19 2
5.13.26-002 5
5.13.26-003 19 6
5.13.26-004 5 6
5.13.26-005 19 2
5.13.26-006 5 6
5.13.26-007 19 6
5.13.26-009 19 6
5.14.26-001 2 6
5.14.26-002 4 6
5.14.26-003 2
5.16.26-001 2 6
5.16.26-002 2
5.16.26-003 2 6
5.16.40-001 5 6
5.18.26-001 2
5.18.26-002 2
FR06T097 2
FR07T026 19 2
6.28.44-003 2 6
AA 2 5
PC 9816-069 19 4
PC 9816-079 19 2
PC 9816-096 19 2
PC 9816-104 4 5
PC 9816-114 2 5
PC 9817-097 2 5
4.18.15-010 2 5
4.18.15-042 2
4.18.15-047 2 5
4.18.15-048 2
4.3.1-003 2
4.3.1-005 2
4.3.1-006 2
4.3.1-007 2
5.3.1-009 13 2
5.3.1-011 2
5.3.1-012 13 2
5.3.1-013 2
5.3.1-014 2
5.4.15-001 2 5
5.4.15-002 2
5.4.15-003 2 4
FR01T070 2
FR49T083 2
5.16.17-003 2 5
5.16.25-006 2 5
5.16.25-008 2 5
5.16.25-012 5
5.20.6-001 5 6
6.16.44-008 2
6.4.45-003 5
6.4.6-004 2 5
6.4.6-006 5
6.4.6-007 2 5
6.4.6-008 2 6
6.4.6-009 5
5.16.17-001 2 3
5.16.17-004 2 5
6.14.17-001 3 4
6.14.17-002 3 4
6.14.17-003 3 4
6.14.17-004 4 5
6.14.17-005 3 4
FR02T024 5
4.14.17-001 2 4
5.13.26-008 5
6.28.44-004 10 6
4.3.1-001 2
5.3.1-007 13 2
5.3.1-018 13 2
5.10.40-001 2 4
5.10.40-002 2
5.10.40-003 2 4
5.10.40-004 2 4
5.10.40-005 2 4
5.10.40-007 2
5.10.40-008 4 5
5.10.40-009 2
5.10.40-010 2 5
5.10.40-011 2 4
5.10.40-012 2
5.10.40-013 2 5
5.10.40-014 2
5.10.40-015 2 4
5.10.40-016 4
5.10.40-017 2
5.13.40-002 2 5
5.13.40-003 4 5
5.13.40-004 2 5
5.16.40-003 2
5.16.40-004 4 5
6.30.50-001 19 4
6.30.50-003 19 4
6.10.55-001 2 26
6.10.55-002 2 25
6.10.55-003 2
6.10.55-004 25 5
6.10.55-005 25 5
6.10.55-006 26
6.10.55-007 2
6.10.55-008 26 5
6.10.55-009 2 25
6.10.55-010 2
6.16.55-001 2
6.16.55-002 26 5
6.23.17-001 25 6
6.23.55-002 25 5
6.23.55-005 26 6
6.23.55-007 26 6
6.23.55-008 26 5
6.28.55-001 11
6.28.55-003 11 26
6.28.55-004 26 6
6.28.55-005 26
5.13.40-001 6 73
5.16.25-001 19 5
5.18.25-004 2 5
5.3.1-006 2 5
6.16.44-004 4 5
6.16.44-006 4
6.16.44-007 11 2
6.16.44-009 2 34
6.23.17-003 4 5
6.23.17-004 5 6
Bertiolle 4 9
Napoleon 4 5
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Pav-HB-01-2Sweet Cherry-RosBREED-1.6K-201915.5212.68
Haplotypes
Marker 234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
RosBREED_snp_sweet_cherry_Pp1_01450317BBBABBABAABABABAAABBBBBBBABBABAABAABBBABBABABBABBAABABBBBBABABBBAABABAAAA
RosBREED_snp_sweet_cherry_Pp1_01737374BABBBBABBABABAAAABABABABBABBBAAABBBBBBABBBBABBABBBBBBBAABAABBBBBAAAABBABB
RosBREED_snp_sweet_cherry_Pp1_02115377ABABAABAABABBBBBBBBBA--AAAAAABBBA-BABAB--AABABBAABABBBBBBBBAAAAABBBBBBBBB
RosBREED_snp_sweet_cherry_Pp1_02204110AAAAAAAAAAABAAAAAABAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABABAA
RosBREED_snp_sweet_cherry_Pp1_02441717BABAABBBBABBAAAAAABBABAABBABBAAAB-AAAAAABBAAAAABAAAABAAAAABBBABBBBBBBABAA
RosBREED_snp_sweet_cherry_Pp1_02822461BABBABABBABBAAAAABBBABAABBBBBAAABBBBBAAABBAAAAABABABBAAAAABBBAABAAAABBBAB
RosBREED_snp_sweet_cherry_Pp1_02967004AAAABABAABAABBBBBAAAAAABAAAAAABBAAAAABBBAABBBBBABABAABBBBBAAABBABBBBAAABA
RosBREED_snp_sweet_cherry_Pp1_03030908BABBBBABBBBABBBBBBABABABABABBABBBBBBBBBBBBBBBBBABBBBBBBBBBBBBBBAAAAAABBBB
RosBREED_snp_sweet_cherry_Pp1_03137813ABAABAAAABABBBBBBABABABBBABAABBBAAAAABBBAABBBBBBBABAABBBBBAAABBBAAAABAABA
RosBREED_snp_sweet_cherry_Pp1_03256420BABBABABBBBBBBBBBBBBABAABBBBBABBBBBBBBBABBAAABBBABBABBBBBBBBBAABAAAABBBBB
RosBREED_snp_sweet_cherry_Pp1_03272484BABBABABBBBBBBBBBBBBABAABBBBBABBBBBBBBBABBAAABBBABABBBBBBBBBBAABAAAABBBBB
RosBREED_snp_sweet_cherry_Pp1_03348164BBBBBBBBBABAABAAABBBBBBBBBBBBBAABBBBBAA--BBBBABBBBBBBAABAABBBBBBBBBBABBAB
RosBREED_snp_sweet_cherry_Pp1_03367813AAAABAAAABABBBBBBAAAAAABBABAAABBAAAAABBBAABBBBBBBABAABBBBBAAABBBAAAABAABA
RosBREED_snp_sweet_cherry_Pp1_03438841ABAABABAABAABBBBBABABABBBABAABBBAAAAABBBAABBBBBBBBBAABBBBBAAABBBBBBBAAABA
RosBREED_snp_sweet_cherry_Pp1_03470086BABBABABBABBABAAABBBABAABBBBBAAABBBBBAAABBAAAABBAAABBAABBABBBAAAAAAABBBAB
RosBREED_snp_sweet_cherry_Pp1_03511935AAAAAABAABAABABBBAAAAAAAAAAAAABBAAAAABBBAAAAABAABAAAABBAABAAAAAABBBBAAABA
RosBREED_snp_sweet_cherry_Pp1_03851976BBBBBBABBBBBBBAABBBBBBBBBBBBBBBABBBBBBBBBBBBBBBBBBBBBBABBBBBBBBBABAABBBBB
RosBREED_snp_sweet_cherry_Pp1_04135801AAAAAABAAAAAAABBAAAAAAAAAAAAAAABAAAAAAAAAAAAAAAAAAAAAABAAAAAAAAABABBAAAAA
RosBREED_snp_sweet_cherry_Pp1_04292905AAAAAAAAAAAAAABBAAAAAAAAAAAAAAABAAAAAAAAAAAAAAAAAAAAAABAAAAAAAAAAAAAAAAAA
RosBREED_snp_sweet_cherry_Pp1_04322404ABAAABAAAAAABBBBBAAABABAAAAAABBBAAAAAAAAAAAAABBAAAAAABBBBBBBBAAAABAAAAAAA
RosBREED_snp_sweet_cherry_Pp1_04354807AAAAABAAAAAABBBBAAAAAAAAAAAAAAABAAAAAAAAAAAAABBAAAAAABBBBBBBBAAABBAAAAAAA
RosBREED_snp_sweet_cherry_Pp1_04905651AAAAAAAAABAAAAAAAABAAAAAAAAAAAAAAAAAABABAABABAAABAAAAAAAAAAAAAAAAAAAAAABB
RosBREED_snp_sweet_cherry_Pp1_04935013AAAAAAAAABAAAAAAAABAAAAAAAAAAAAAAAAAABABAABAAAAABAAAAAAAAAAAAAAAAAAAAAABB
RosBREED_snp_sweet_cherry_Pp1_04986018AAAAAABAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABAAAAAABAAAAAA
RosBREED_snp_sweet_cherry_Pp1_05212271AAAABBABBAAABBBABAAAAAAAAAABAABAAAAAAAB--AABBBBAABABABBBBBBBBAAABBAAABAAA
RosBREED_snp_sweet_cherry_Pp1_05324710ABAAAAAAAAAAAAAAAAAABABAAAAAABAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
RosBREED_snp_sweet_cherry_Pp1_05564866BBBBBAABBBABBBBABBBBBBBBBBBBBBABBBBBBBBBBBBBBBBBBBBBBBBBBBAAABBBAAAABBBBB
RosBREED_snp_sweet_cherry_Pp1_05587757BABBBBABBBABBBAABABBABABBBBBBBABABBBBBBBBBBBBABBBBBBBBBBBBBABBBBBBABBBBBB
RosBREED_snp_sweet_cherry_Pp1_05839154ABBAAAAAAABABAABBBAABBBABABBAABBBABAAAAAABAAAABAAAAABABAABAAABAAAAAAAAAAA
RosBREED_snp_sweet_cherry_Pp4_16799787BBBBBBBBBBABBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
RosBREED_snp_tart_cherry_a_Pp1_01404526BBBBBBABBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBABABBBAABABBBBB
RosBREED_snp_tart_cherry_a_Pp1_03850920BABBBBABBBBBBAAAABBBABABBBBBBAAABBBBBBBBBBBBBBABBBBBBBAAABBBBBBBABAABBBBB
RosBREED_snp_tart_cherry_a_Pp1_04759453AAAAABAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABABAAABBABAAAAA
RosBREED_snp_tart_cherry_a_Pp1_05857888BBBBBBBBBBABBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
RosCOS1231-478_snp_sweet_cherry_Pp1_05590809BBBBBBBBBBBBABBBABBBBBBBABABBBBABBBBBBBBBBBBBBABBBBBBBABBABBBABBBBBBBBBBB
RosCOS1231-486_snp_sweet_cherry_Pp1_05590801AAAAAAAAAABAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
RosCOS1523-098_snp_sweet_cherry_Pp1_03013675ABAAAAAAAAAAAAAAAAAABABAAAAAABAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
RosCOS1602-202_snp_sweet_cherry_Pp1_02602122BABBABBBBABAAAAAABABABAABBBBBAAABBBBBAAABBAAAAABABABBAAAAABBBABBBBBBABBBB
Alignments
Feature NameTypeLocationAnalysis
Pp01 chromosome Pp01:1404386..6307249. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)