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Prunus armeniaca (apricot)
Prunus avium and cerasus (sweet & tart cherry)
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Pav-HB-01-2
Haplotype Block Overview
Alignments
Haplotypes
Map Positions
Projects
Publications
Stock Haplotype
Haplotype Block Overview
Name
Pav-HB-01-2
Species
Prunus avium
Stock Haplotype
[
view all 517
]
Haplotype
[
view all
]
Publications
Year
Publication
2019
Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.
Stock Haplotype
Name
Haplotype
Summit
2 5
Lambert
5
Regina
2
Ambrunes
7 8
Lapins
2 5
Stella
5
Sweetheart
2
Van
2 5
Schneiders
2
Bing
4 5
Rainier
2 4
5.18.25-001
2
5.3.1-001
2
5.3.1-002
2 5
Benton
5 6
Brooks
10 4
Cashmere
2 5
Chelan
2 5
Chinook
4
Cowiche
11 6
Gil Peck
4 5
Glacier
2 5
Kiona
5
Mildew Immune Mazzard #17
14 15
Mildew Immune Mazzard #23
14 16
Newstar
5
NY 54
17 18
PMR-1
19 5
Sato Nashiki
20 5
Schmidt
19 21
Selah
2 5
Tieton
10 5
Ulster
4 5
Vic
19 4
Windsor
11 2
23_1_47
17 2
23_2_46
18 3
23_3_24
17
23_3_28
17 2
23_3_40
17 3
23_5_17
17 3
23_8_24
3
23_8_45
17
4.10.19-001
2 5
4.10.19-002
5
4.10.19-003
5
4.10.19-004
2
4.10.19-005
2
4.10.19-006
5
4.10.19-008
10
4.10.19-009
2 5
4.10.19-010
2 5
4.10.19-011
2 5
4.10.2-001
2 8
4.10.2-002
5 7
4.10.2-004
5 7
4.10.2-005
5 8
4.10.2-006
5
4.10.2-008
2
4.10.2-009
2 8
4.10.2-010
5
4.10.5-001
5
4.10.5-002
2 5
4.10.5-003
5
4.10.5-004
2 5
4.10.5-005
5
4.10.5-006
2
4.10.5-015
2 5
4.10.5-016
2 5
4.10.5-018
2 5
4.10.5-019
5
4.10.5-020
2 5
4.10.5-028
5
4.10.5-029
2 5
4.10.5-030
2
4.16.2-001
2 8
4.18.15-001
2 5
4.18.15-002
2 5
4.18.15-003
2
4.18.15-004
2 5
4.18.15-005
2 5
4.18.15-006
2 5
4.18.15-007
5
4.18.15-009
2 5
4.18.15-011
2 5
4.18.15-012
2
4.18.15-013
2
4.18.15-014
2
4.18.15-015
2 5
4.18.15-016
2
4.18.15-028
2
4.18.15-030
2
4.18.15-039
2
4.18.15-040
2 5
4.18.15-043
2
4.18.2-005
2 8
4.18.2-007
2 7
4.18.2-008
5
4.18.2-010
2
4.18.2-015
5 7
4.18.2-016
5 7
4.18.2-018
2 7
4.18.2-019
2
4.18.2-020
2 8
4.18.2-024
2 8
4.18.2-027
5 7
4.18.2-028
5 7
5.12.5-005
2 5
5.12.5-007
2 5
5.12.5-008
5
5.12.5-009
5
5.12.5-010
5
5.12.5-011
2 5
5.12.5-019
5 74
5.12.5-020
5
5.12.5-021
2 5
5.12.5-022
2 5
5.14.15-003
2
5.14.15-004
2
5.14.15-005
2 4
5.14.15-006
2
5.14.15-007
2
5.14.15-013
2
5.14.15-014
2 4
5.14.15-015
2 4
5.14.15-016
2 4
5.14.15-017
2 4
5.14.15-018
2
5.14.15-019
2
5.14.15-020
2
5.14.23-003
2 5
5.14.23-004
2 6
5.14.23-006
2 5
5.23.15-001
6
5.23.15-002
2 6
5.23.2-001
5 8
5.23.2-002
5 8
5.23.2-003
5 7
5.28.15-001
11 2
5.28.15-002
11 2
5.28.15-003
2 6
5.28.15-004
11 2
5.28.15-005
2
5.28.15-006
2
5.28.15-007
11 2
5.28.15-008
2 6
5.28.15-009
2 6
5.28.15-010
2 6
5.28.15-011
2
5.28.15-012
2 6
5.28.15-013
2 6
5.28.37-001
2
5.28.37-002
5
5.28.37-003
2 6
5.28.37-004
11 2
5.28.37-005
2 6
5.28.37-008
11 2
5.28.37-009
6
5.28.37-010
5 6
5.28.37-011
11 5
5.28.37-012
2
5.4.15-004
2 4
5.4.15-005
2 5
6.14.2-006
2 7
6.14.2-007
4 8
6.14.2-008
4
6.14.2-009
2
6.14.2-010
2 8
6.14.2-011
2 8
6.14.2-012
4
6.14.2-013
2 4
6.14.2-015
4 7
6.29.49-001
14 19
6.29.49-002
15 4
6.29.49-003
15 19
6.29.49-005
15 19
6.29.49-007
14 19
6.29.49-008
4
6.30.49-009
15
6.30.49-011
15 2
6.30.49-012
15 19
6.30.49-014
14 2
6.30.49-015
19
6.30.49-016
15 19
6.30.49-017
14 2
6.31.49-003
15 5
6.31.49-004
15 4
6.31.49-005
15 5
6.31.49-006
14 4
6.31.49-007
5
6.31.49-009
15 5
6.31.49-010
14 4
6.31.49-011
5
6.31.49-012
14 4
6.31.49-013
5
6.31.49-014
14 4
6.31.49-015
14 4
6.32.49-032
14 5
6.32.49-033
15 2
6.32.49-034
15 5
6.32.49-035
14 5
6.32.49-037
5
6.32.49-038
15 5
6.32.49-039
14 5
6.32.49-040
14
6.32.49-041
15 2
6.33.49-001
2
6.33.49-002
15 2
6.33.49-003
15 5
6.33.49-004
15 2
23-01-11
17 3
23-02-34
17 2
23-03-13
18 2
23-03-23
18 3
23-03-48
17 2
23-03-56
17 2
23-06-04
17 3
23-06-23
17 2
23-07-26
17 2
23-08-55
17 3
Dzherlo
2
Olympus
2 5
PC 7146-16
5 6
Kordia
13 2
Cristobalina
12 2
Vittoria
25 26
FR20T047
2 6
FR13T004
2 4
FR13T071
19 5
FR31T121
5
FR32T087
2 4
FR32T088
2 9
FR32T093
2 4
FR20T045
2
FR26T117
5
FR29T115
16 5
PC 9816-005
19 4
PC 9816-023
19 2
PC 9816-041
2 5
PC 9816-059
4 5
PC 9816-083
2 5
PC 9816-103
2 5
PC 9816-105
19 2
PC 9816-106
19 2
PC 9816-112
19 2
PC 9816-078
19 5
PC 9819-005
5
PC 9819-031
19 2
PC 9819-038
19 5
PC 9814-025
4 5
PC 9814-078
19 5
PC 9814-103
19
PC 9814-105
19 5
PC 9814-026
19 5
PC 9814-028
5
PC 9814-055
19 4
PC 9814-062
5
PC 9814-063
4 5
PC 9814-068
19 5
PC 9814-071
5
PC 9814-076
19 5
PC 9819-034
4 5
PC 9816-042
4 5
Emperor Francis
2 3
Black Republican
2 5
Krupnoplodnaya
2
Early Burlat
10 2
Venus
2 4
Moreau
2 6
Index
4 5
Sunburst
3 5
6.14.6-008
2
FR02T062
5 8
FR02T063
5 8
5.14.23.001
2 6
6.16.44-005
5 6
6.23.44-001
6
6.23.44-002
6
6.23.55-006
5 6
6.23.55-010
5
6.23.6-002
5
6.23.6-003
5 6
6.16.44-001
2 9
6.16.44-002
5 9
6.16.44-003
2 4
6.28.44-001
6 9
6.28.44-002
4
6.4.44-003
4
6.4.44-004
4 5
6.4.44-006
4 9
6.4.44-007
9
6.4.44-009
5 9
6.4.44-010
4 5
6.4.45-001
9
4.3.1-004
13 4
4.3.1-009
13 5
5.3.1-008
13 4
5.3.1-010
2 5
5.3.1-015
13 5
5.3.1-016
13 5
5.3.1-017
2 5
6.30.50-002
2 4
6.14.6-003
2
6.28.45-001
11
FR09T089
2 5
6.12.45-001
2 5
6.12.45-002
2 5
6.12.45-003
12 5
6.12.45-004
12 5
6.12.45-005
12 5
6.12.45-007
12 5
6.12.45-008
2 5
6.12.45-009
2 5
6.12.45-010
2 5
6.14.45-001
2
6.14.45-003
12 2
6.14.45-004
2
6.14.45-005
2
6.14.45-006
2
6.14.45-007
2
6.14.45-008
2
6.14.45-009
12 2
6.28.45-002
11 2
6.14.6-001
2 4
6.14.6-002
2
6.14.6-004
2
6.14.6-005
2
6.14.6-006
2
6.14.6-007
2
6.14.6-010
2
6.23.6-004
2
6.23.6-005
2 6
6.23.6-007
2 6
6.23.6-008
2 5
6.23.6-012
2 5
6.28.44-005
11 5
6.28.55-006
11 19
6.28.55-007
11 2
6.23.6-001
2 5
6.23.6-006
11 6
6.23.6-009
5 6
6.4.44-001
26 4
6.4.6-001
2
FR04T029
30 5
FR08T074
19 2
6.28.55-002
11
FR01T050
2
5.10.25-001
2
5.10.25-002
2 5
5.16.25-002
2 5
5.16.25-003
2 5
5.16.25-004
2 5
5.16.25-005
2
5.16.25-009
2 5
5.16.25-010
2
5.16.25-013
2
5.18.25-005
2
4.3.1-008
2 5
5.3.1-005
2
FR09T037
2 5
6.29.50-001
14 19
6.29.50-002
16 4
6.29.50-003
14 19
6.29.50-004
4
6.29.50-005
16
6.29.50-007
14 4
6.29.50-008
16 19
6.30.50-004
2
6.30.50-005
14 19
6.31.50-001
16 4
6.31.50-002
14 4
6.31.50-003
14 4
6.31.50-004
14 5
6.31.50-005
14 4
6.32.50-001
16 2
6.32.50-002
14 5
6.32.50-003
5
6.32.50-004
16 2
6.32.50-005
14 2
6.32.50-006
14 2
6.32.50-007
16 5
6.32.50-008
16
6.33.50-001
14 2
5.10.26-001
6
5.10.26-002
2 5
5.10.26-003
2 5
5.10.26-004
2 6
5.10.26-005
2 5
5.10.26-007
5 6
5.10.26-008
2 5
5.13.26-001
19 2
5.13.26-002
5
5.13.26-003
19 6
5.13.26-004
5 6
5.13.26-005
19 2
5.13.26-006
5 6
5.13.26-007
19 6
5.13.26-009
19 6
5.14.26-001
2 6
5.14.26-002
4 6
5.14.26-003
2
5.16.26-001
2 6
5.16.26-002
2
5.16.26-003
2 6
5.16.40-001
5 6
5.18.26-001
2
5.18.26-002
2
FR06T097
2
FR07T026
19 2
6.28.44-003
2 6
AA
2 5
PC 9816-069
19 4
PC 9816-079
19 2
PC 9816-096
19 2
PC 9816-104
4 5
PC 9816-114
2 5
PC 9817-097
2 5
4.18.15-010
2 5
4.18.15-042
2
4.18.15-047
2 5
4.18.15-048
2
4.3.1-003
2
4.3.1-005
2
4.3.1-006
2
4.3.1-007
2
5.3.1-009
13 2
5.3.1-011
2
5.3.1-012
13 2
5.3.1-013
2
5.3.1-014
2
5.4.15-001
2 5
5.4.15-002
2
5.4.15-003
2 4
FR01T070
2
FR49T083
2
5.16.17-003
2 5
5.16.25-006
2 5
5.16.25-008
2 5
5.16.25-012
5
5.20.6-001
5 6
6.16.44-008
2
6.4.45-003
5
6.4.6-004
2 5
6.4.6-006
5
6.4.6-007
2 5
6.4.6-008
2 6
6.4.6-009
5
5.16.17-001
2 3
5.16.17-004
2 5
6.14.17-001
3 4
6.14.17-002
3 4
6.14.17-003
3 4
6.14.17-004
4 5
6.14.17-005
3 4
FR02T024
5
4.14.17-001
2 4
5.13.26-008
5
6.28.44-004
10 6
4.3.1-001
2
5.3.1-007
13 2
5.3.1-018
13 2
5.10.40-001
2 4
5.10.40-002
2
5.10.40-003
2 4
5.10.40-004
2 4
5.10.40-005
2 4
5.10.40-007
2
5.10.40-008
4 5
5.10.40-009
2
5.10.40-010
2 5
5.10.40-011
2 4
5.10.40-012
2
5.10.40-013
2 5
5.10.40-014
2
5.10.40-015
2 4
5.10.40-016
4
5.10.40-017
2
5.13.40-002
2 5
5.13.40-003
4 5
5.13.40-004
2 5
5.16.40-003
2
5.16.40-004
4 5
6.30.50-001
19 4
6.30.50-003
19 4
6.10.55-001
2 26
6.10.55-002
2 25
6.10.55-003
2
6.10.55-004
25 5
6.10.55-005
25 5
6.10.55-006
26
6.10.55-007
2
6.10.55-008
26 5
6.10.55-009
2 25
6.10.55-010
2
6.16.55-001
2
6.16.55-002
26 5
6.23.17-001
25 6
6.23.55-002
25 5
6.23.55-005
26 6
6.23.55-007
26 6
6.23.55-008
26 5
6.28.55-001
11
6.28.55-003
11 26
6.28.55-004
26 6
6.28.55-005
26
5.13.40-001
6 73
5.16.25-001
19 5
5.18.25-004
2 5
5.3.1-006
2 5
6.16.44-004
4 5
6.16.44-006
4
6.16.44-007
11 2
6.16.44-009
2 34
6.23.17-003
4 5
6.23.17-004
5 6
Bertiolle
4 9
Napoleon
4 5
Map Positions
Haplotype Block
Map Name
Linkage Group
Start
Stop
Pav-HB-01-2
Sweet Cherry-RosBREED-1.6K-2019
1
5.52
12.68
Projects
Project Name
RosBREED_Sweet_Cherry_CRS_Haplotype_2020
Haplotypes
Marker
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
RosBREED_snp_sweet_cherry_Pp1_01450317
B
B
B
A
B
B
A
B
A
A
B
A
B
A
B
A
A
A
B
B
B
B
B
B
B
A
B
B
A
B
A
A
B
A
A
B
B
B
A
B
B
A
B
A
B
B
A
B
B
A
A
B
A
B
B
B
B
B
A
B
A
B
B
B
A
A
B
A
B
A
A
A
A
RosBREED_snp_sweet_cherry_Pp1_01737374
B
A
B
B
B
B
A
B
B
A
B
A
B
A
A
A
A
B
A
B
A
B
A
B
B
A
B
B
B
A
A
A
B
B
B
B
B
B
A
B
B
B
B
A
B
B
A
B
B
B
B
B
B
B
A
A
B
A
A
B
B
B
B
B
A
A
A
A
B
B
A
B
B
RosBREED_snp_sweet_cherry_Pp1_02115377
A
B
A
B
A
A
B
A
A
B
A
B
B
B
B
B
B
B
B
B
A
-
-
A
A
A
A
A
A
B
B
B
A
-
B
A
B
A
B
-
-
A
A
B
A
B
B
A
A
B
A
B
B
B
B
B
B
B
B
A
A
A
A
A
B
B
B
B
B
B
B
B
B
RosBREED_snp_sweet_cherry_Pp1_02204110
A
A
A
A
A
A
A
A
A
A
A
B
A
A
A
A
A
A
B
A
A
A
A
A
A
A
A
A
A
A
A
A
A
A
A
A
A
A
A
A
A
A
A
A
A
A
A
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A
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RosBREED_snp_sweet_cherry_Pp1_02441717
B
A
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A
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B
B
B
A
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B
A
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-
A
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A
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A
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RosBREED_snp_sweet_cherry_Pp1_02822461
B
A
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A
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A
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A
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A
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A
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A
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RosBREED_snp_sweet_cherry_Pp1_02967004
A
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A
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A
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A
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A
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B
B
A
A
A
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B
A
B
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B
B
A
A
A
B
A
RosBREED_snp_sweet_cherry_Pp1_03030908
B
A
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A
B
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B
B
A
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A
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A
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B
B
B
A
A
A
A
A
A
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B
RosBREED_snp_sweet_cherry_Pp1_03137813
A
B
A
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A
A
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A
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A
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B
A
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B
A
A
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A
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A
RosBREED_snp_sweet_cherry_Pp1_03256420
B
A
B
B
A
B
A
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B
B
B
B
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A
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B
A
A
B
A
A
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A
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B
RosBREED_snp_sweet_cherry_Pp1_03272484
B
A
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B
A
B
A
B
B
B
B
B
B
B
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A
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B
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B
B
A
A
B
A
A
A
A
B
B
B
B
B
RosBREED_snp_sweet_cherry_Pp1_03348164
B
B
B
B
B
B
B
B
B
A
B
A
A
B
A
A
A
B
B
B
B
B
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B
B
B
B
B
B
A
A
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B
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A
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-
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B
B
B
B
A
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B
A
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A
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B
B
B
B
B
B
B
B
B
A
B
B
A
B
RosBREED_snp_sweet_cherry_Pp1_03367813
A
A
A
A
B
A
A
A
A
B
A
B
B
B
B
B
B
A
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A
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A
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B
B
B
A
A
A
B
B
B
A
A
A
A
B
A
A
B
A
RosBREED_snp_sweet_cherry_Pp1_03438841
A
B
A
A
B
A
B
A
A
B
A
A
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B
B
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B
A
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A
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A
A
B
B
B
B
B
A
A
A
B
B
B
B
B
B
B
A
A
A
B
A
RosBREED_snp_sweet_cherry_Pp1_03470086
B
A
B
B
A
B
A
B
B
A
B
B
A
B
A
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A
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A
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A
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A
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B
B
A
A
A
A
A
A
A
B
B
B
A
B
RosBREED_snp_sweet_cherry_Pp1_03511935
A
A
A
A
A
A
B
A
A
B
A
A
B
A
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B
A
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A
A
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A
A
A
B
B
B
B
A
A
A
B
A
RosBREED_snp_sweet_cherry_Pp1_03851976
B
B
B
B
B
B
A
B
B
B
B
B
B
B
A
A
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B
B
B
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A
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B
B
A
B
B
B
B
B
B
B
B
B
A
B
A
A
B
B
B
B
B
RosBREED_snp_sweet_cherry_Pp1_04135801
A
A
A
A
A
A
B
A
A
A
A
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A
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A
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RosBREED_snp_sweet_cherry_Pp1_04292905
A
A
A
A
A
A
A
A
A
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A
A
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A
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RosBREED_snp_sweet_cherry_Pp1_04322404
A
B
A
A
A
B
A
A
A
A
A
A
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B
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A
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A
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A
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RosBREED_snp_sweet_cherry_Pp1_04354807
A
A
A
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B
A
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B
B
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A
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B
A
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A
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A
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RosBREED_snp_sweet_cherry_Pp1_04905651
A
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A
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RosBREED_snp_sweet_cherry_Pp1_04935013
A
A
A
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A
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RosBREED_snp_sweet_cherry_Pp1_04986018
A
A
A
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A
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RosBREED_snp_sweet_cherry_Pp1_05212271
A
A
A
A
B
B
A
B
B
A
A
A
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B
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A
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A
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-
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A
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A
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A
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RosBREED_snp_sweet_cherry_Pp1_05324710
A
B
A
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A
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RosBREED_snp_sweet_cherry_Pp1_05564866
B
B
B
B
B
A
A
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B
A
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A
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A
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A
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A
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A
A
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RosBREED_snp_sweet_cherry_Pp1_05587757
B
A
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B
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B
A
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A
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A
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A
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A
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RosBREED_snp_sweet_cherry_Pp1_05839154
A
B
B
A
A
A
A
A
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A
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A
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A
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A
A
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A
A
A
A
A
A
A
A
A
A
A
RosBREED_snp_sweet_cherry_Pp4_16799787
B
B
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A
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B
B
B
B
B
B
B
B
B
B
B
B
B
RosBREED_snp_tart_cherry_a_Pp1_01404526
B
B
B
B
B
B
A
B
B
B
B
B
B
B
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B
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B
A
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A
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B
A
A
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A
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RosBREED_snp_tart_cherry_a_Pp1_03850920
B
A
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B
A
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A
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A
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A
A
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RosBREED_snp_tart_cherry_a_Pp1_04759453
A
A
A
A
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B
A
A
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RosBREED_snp_tart_cherry_a_Pp1_05857888
B
B
B
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B
A
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B
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RosCOS1231-478_snp_sweet_cherry_Pp1_05590809
B
B
B
B
B
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B
B
B
B
B
B
A
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A
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A
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A
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RosCOS1231-486_snp_sweet_cherry_Pp1_05590801
A
A
A
A
A
A
A
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RosCOS1523-098_snp_sweet_cherry_Pp1_03013675
A
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A
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RosCOS1602-202_snp_sweet_cherry_Pp1_02602122
B
A
B
B
A
B
B
B
B
A
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A
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B
B
A
A
A
A
A
B
A
B
A
B
B
A
A
A
A
A
B
B
B
A
B
B
B
B
B
B
A
B
B
B
B
Alignments
Feature Name
Type
Location
Analysis
Pp01
chromosome
Pp01:1404386..6307249.
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)