Pav-HB-01-1

Haplotype Block Overview

Name	Pav-HB-01-1
Species	Prunus avium
Stock Haplotype	[view all 518]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Summit	3 4
Lambert	4
Regina	16 2
Ambrunes	6 7
Lapins	3 4
Stella	4
Sweetheart	3
Van	3 4
Schneiders	2
Bing	2 4
Rainier	3 4
5.18.25-001	2 3
5.3.1-001	11 3
5.3.1-002	2 4
Benton	2 4
Brooks	4 9
Cashmere	4 5
Chelan	4 5
Chinook	2
Cowiche	10 2
Gil Peck	2 4
Glacier	4 5
Kiona	4
Mildew Immune Mazzard #17	12 13
Mildew Immune Mazzard #23	14 9
Newstar	4
NY 54	15
PMR-1	4
Sato Nashiki	14 4
Schmidt	17 18
Selah	3 4
Tieton	4 9
Ulster	2 4
Vic	18 2
Windsor	10 3
23_1_47	15 2
23_2_46	15 3
23_3_24	15 3
23_3_28	15 2
23_3_40	15 2
23_5_17	15 3
23_8_24	15 3
23_8_45	15 2
4.10.19-001	3 4
4.10.19-002	4
4.10.19-003	4
4.10.19-004	3 4
4.10.19-005	16 3
4.10.19-006	4
4.10.19-008	4 9
4.10.19-009	3 4
4.10.19-010	3 4
4.10.19-011	3 4
4.10.2-001	3 7
4.10.2-002	4 6
4.10.2-004	4 6
4.10.2-005	4 7
4.10.2-006	4 7
4.10.2-008	3
4.10.2-009	3 7
4.10.2-010	4 7
4.10.5-001	4
4.10.5-002	4 5
4.10.5-003	4 5
4.10.5-004	3 4
4.10.5-005	4
4.10.5-006	3 5
4.10.5-015	3 4
4.10.5-016	3 4
4.10.5-018	3 4
4.10.5-019	4
4.10.5-020	4 5
4.10.5-028	4
4.10.5-029	4 5
4.10.5-030	2 3
4.16.2-001	3 7
4.18.15-001	2 4
4.18.15-002	2 4
4.18.15-003	2 3
4.18.15-004	16 4
4.18.15-005	2 4
4.18.15-006	2 4
4.18.15-007	4
4.18.15-009	16 4
4.18.15-011	2 4
4.18.15-012	2 3
4.18.15-013	16 3
4.18.15-014	16 3
4.18.15-015	16 4
4.18.15-016	2 3
4.18.15-028	16 3
4.18.15-030	2 3
4.18.15-039	16 3
4.18.15-040	16 4
4.18.15-043	2 3
4.18.2-005	3 7
4.18.2-007	3 6
4.18.2-008	4 7
4.18.2-010	3 6
4.18.2-015	4 6
4.18.2-016	4 6
4.18.2-018	3 6
4.18.2-019	3 7
4.18.2-020	3 7
4.18.2-024	3 7
4.18.2-027	4 6
4.18.2-028	4 6
5.12.5-005	4 5
5.12.5-007	4 5
5.12.5-008	4
5.12.5-009	4
5.12.5-010	4
5.12.5-011	4 5
5.12.5-019	4
5.12.5-020	4
5.12.5-021	4 5
5.12.5-022	4 5
5.14.15-003	16 3
5.14.15-004	2 3
5.14.15-005	16 4
5.14.15-006	3
5.14.15-007	2 3
5.14.15-013	2 3
5.14.15-014	16 4
5.14.15-015	2 4
5.14.15-016	16 4
5.14.15-017	2 4
5.14.15-018	2 3
5.14.15-019	16 3
5.14.15-020	16 3
5.14.23-003	3 4
5.14.23-004	2 3
5.14.23-006	3 4
5.23.15-001	2
5.23.15-002	16 2
5.23.2-001	4
5.23.2-002	4 7
5.23.2-003	4 6
5.28.15-001	10 2
5.28.15-002	2
5.28.15-003	16 2
5.28.15-004	10 2
5.28.15-005	2
5.28.15-006	10 2
5.28.15-007	10 16
5.28.15-008	16 2
5.28.15-009	2
5.28.15-010	2
5.28.15-011	16 2
5.28.15-012	16 2
5.28.15-013	2
5.28.37-001	2 3
5.28.37-002	10 4
5.28.37-003	2 3
5.28.37-004	10 3
5.28.37-005	2 3
5.28.37-008	2 3
5.28.37-009	2 4
5.28.37-010	2 4
5.28.37-011	10 4
5.28.37-012	2 3
5.4.15-004	2
5.4.15-005	16 4
6.14.2-006	3 6
6.14.2-007	4 7
6.14.2-008	4 7
6.14.2-009	2 4
6.14.2-010	3 7
6.14.2-011	3 7
6.14.2-012	4 7
6.14.2-013	2 4
6.14.2-015	4 6
6.29.49-001	12 4
6.29.49-002	13 4
6.29.49-003	13 4
6.29.49-005	13 4
6.29.49-007	12 4
6.29.49-008	13 4
6.30.49-009	13 4
6.30.49-011	13 3
6.30.49-012	13 4
6.30.49-013	12 4
6.30.49-014	12 3
6.30.49-015	13 4
6.30.49-016	13 4
6.30.49-017	12 3
6.31.49-003	13 4
6.31.49-004	13 4
6.31.49-005	13 4
6.31.49-006	12 4
6.31.49-007	12 4
6.31.49-009	13 4
6.31.49-010	12 4
6.31.49-011	12 4
6.31.49-012	12 4
6.31.49-013	12 4
6.31.49-014	12 4
6.31.49-015	12 4
6.32.49-032	12 4
6.32.49-033	13 3
6.32.49-034	13 4
6.32.49-035	12 4
6.32.49-037	13 4
6.32.49-038	13 4
6.32.49-039	12 4
6.32.49-040	12 3
6.32.49-041	13 3
6.33.49-001	12 3
6.33.49-002	13 3
6.33.49-003	13 4
6.33.49-004	13 3
23-01-11	15 3
23-02-34	15 2
23-03-13	15 2
23-03-23	15 3
23-03-48	15 2
23-03-56	15 2
23-06-04	15 3
23-06-23	15 2
23-07-26	15 2
23-08-55	15 3
Dzherlo	2
Olympus	3 4
PC 7146-16	2 4
Kordia	11 2
Cristobalina	2
Vittoria	2
FR20T047	2 5
FR13T004	3 4
FR13T071	4
FR31T121	2 4
FR32T087	2 3
FR32T088	2 3
FR32T093	2 3
FR20T045	10 16
FR26T117	3
FR29T115	4 9
PC 9816-005	4
PC 9816-023	3 4
PC 9816-041	3 4
PC 9816-059	4
PC 9816-083	3 4
PC 9816-103	3 4
PC 9816-105	3 4
PC 9816-106	3 4
PC 9816-112	4
PC 9816-078	4
PC 9819-005	3 4
PC 9819-031	3 4
PC 9819-038	4
PC 9814-025	2 4
PC 9814-078	4
PC 9814-103	4
PC 9814-105	4
PC 9814-026	4
PC 9814-028	4
PC 9814-055	2 4
PC 9814-062	4
PC 9814-063	2 4
PC 9814-068	4
PC 9814-071	4
PC 9814-076	4
PC 9819-034	2 4
PC 9816-042	4
Emperor Francis	2 3
Black Republican	4 8
Krupnoplodnaya	2 5
Early Burlat	5 9
Venus	2 3
Moreau	2 5
Index	2 4
Sunburst	3 4
6.14.6-008	3 6
FR02T062	4 7
FR02T063	4 7
5.14.23.001	2 3
6.16.44-005	2 4
6.23.44-001	2
6.23.44-002	2
6.23.55-006	2 4
6.23.55-010	4
6.23.6-002	4
6.23.6-003	2 4
6.16.44-001	2 3
6.16.44-002	2 4
6.16.44-003	2 3
6.28.44-001	2
6.28.44-002	2
6.4.44-003	2 4
6.4.44-004	2 4
6.4.44-006	2
6.4.44-007	2
6.4.44-009	2 4
6.4.44-010	2 4
6.4.45-001	2 4
4.3.1-004	11 2
4.3.1-009	11 4
5.3.1-008	11 2
5.3.1-010	2 4
5.3.1-015	11
5.3.1-016	11 4
5.3.1-017	2 4
6.30.50-002	2 3
6.14.6-003	3 5
6.28.45-001	10 5
FR09T089	4 5
6.12.45-001	2 4
6.12.45-002	2 4
6.12.45-003	2 4
6.12.45-004	2 4
6.12.45-005	2 4
6.12.45-007	2 4
6.12.45-008	2 4
6.12.45-009	2 4
6.12.45-010	2 4
6.14.45-001	2 3
6.14.45-003	2
6.14.45-004	2 3
6.14.45-005	2 3
6.14.45-006	2 3
6.14.45-007	2 3
6.14.45-008	2 3
6.14.45-009	2 3
6.28.45-002	10 2
6.14.6-001	2 4
6.14.6-002	2 3
6.14.6-004	2 4
6.14.6-005	2 3
6.14.6-006	2 3
6.14.6-007	2 3
6.14.6-010	2 3
6.23.6-004	2 4
6.23.6-005	2
6.23.6-007	2
6.23.6-008	2 4
6.23.6-012	2 4
6.28.44-005	10 4
6.28.55-006	10 4
6.28.55-007	10 25
6.23.6-001	3 4
6.23.6-006	10 2
6.23.6-009	2 4
6.4.44-001	2
6.4.6-001	3
FR04T029	4
FR08T074	3 4
6.28.55-002	10 2
FR01T050	11 3
5.10.25-001	3 5
5.10.25-002	3 5
5.16.25-002	2 4
5.16.25-003	2 4
5.16.25-004	2 4
5.16.25-005	3 5
5.16.25-009	2 4
5.16.25-010	3 5
5.16.25-013	2 3
5.18.25-005	2 3
4.3.1-008	2 4
5.3.1-005	11 3
FR09T037	3 4
6.29.50-001	14 4
6.29.50-002	4 9
6.29.50-003	4
6.29.50-004	14 4
6.29.50-005	4 9
6.29.50-007	14 4
6.29.50-008	4 9
6.30.50-004	3 9
6.30.50-005	14 4
6.31.50-001	4 9
6.31.50-002	14 4
6.31.50-003	14 4
6.31.50-004	14 4
6.31.50-005	4
6.32.50-001	3 9
6.32.50-002	14 4
6.32.50-003	4 9
6.32.50-004	14 3
6.32.50-005	14 3
6.32.50-006	14 3
6.32.50-007	4 9
6.32.50-008	3 9
6.33.50-001	14 3
5.10.26-001	2 3
5.10.26-002	4 5
5.10.26-003	4 5
5.10.26-004	2 3
5.10.26-005	5
5.10.26-007	2 4
5.10.26-008	4 5
5.13.26-001	2 4
5.13.26-002	4 5
5.13.26-003	2 4
5.13.26-004	4 5
5.13.26-005	4 5
5.13.26-006	2 4
5.13.26-007	2 4
5.13.26-009	2 4
5.14.26-001	2 3
5.14.26-002	2 4
5.14.26-003	3 5
5.16.26-001	2 3
5.16.26-002	3 5
5.16.26-003	2 3
5.16.40-001	2 4
5.18.26-001	3 5
5.18.26-002	3 5
FR06T097	3 4
FR07T026	3 4
6.28.44-003	2 3
AA	3 4
PC 9816-069	4
PC 9816-079	3 4
PC 9816-096	3 4
PC 9816-104	4
PC 9816-114	3 4
PC 9817-097	3 4
4.18.15-010	16 4
4.18.15-042	2 3
4.18.15-047	2 4
4.18.15-048	16 3
4.3.1-003	16 2
4.3.1-005	2
4.3.1-006	2
4.3.1-007	2
5.3.1-009	11 16
5.3.1-011	2
5.3.1-012	11 16
5.3.1-013	16 2
5.3.1-014	2
5.4.15-001	2 4
5.4.15-002	2 4
5.4.15-003	16
FR01T070	16 3
FR49T083	16 3
5.16.17-003	3 4
5.16.25-006	3 4
5.16.25-008	3 4
5.16.25-012	4
5.20.6-001	2 4
6.16.44-008	3
6.4.45-003	4
6.4.6-004	3 4
6.4.6-006	4
6.4.6-007	3 4
6.4.6-008	2 3
6.4.6-009	4
5.16.17-001	3
5.16.17-004	3 4
6.14.17-001	3 4
6.14.17-002	3 4
6.14.17-003	3 4
6.14.17-004	4
6.14.17-005	3 4
FR02T024	4
4.14.17-001	3 4
5.13.26-008	4
6.28.44-004	2 9
4.3.1-001	2 3
5.3.1-007	11 3
5.3.1-018	11 3
5.10.40-001	2 3
5.10.40-002	3
5.10.40-003	3
5.10.40-004	2 3
5.10.40-005	2 3
5.10.40-007	3
5.10.40-008	2 4
5.10.40-009	3
5.10.40-010	3 4
5.10.40-011	2 3
5.10.40-012	2
5.10.40-013	3 4
5.10.40-014	3
5.10.40-015	2 3
5.10.40-016	2 3
5.10.40-017	3
5.13.40-002	2 4
5.13.40-003	4
5.13.40-004	3 4
5.16.40-003	2 3
5.16.40-004	3 4
6.30.50-001	2 4
6.30.50-003	2 4
6.10.55-001	2 3
6.10.55-002	2 3
6.10.55-003	2 3
6.10.55-004	2 4
6.10.55-005	2 4
6.10.55-006	2 4
6.10.55-007	2 3
6.10.55-008	2 4
6.10.55-009	2
6.10.55-010	2 3
6.16.55-001	2 3
6.16.55-002	2 4
6.23.17-001	2
6.23.55-002	2 4
6.23.55-005	2
6.23.55-007	2
6.23.55-008	2 4
6.28.55-001	10 2
6.28.55-003	10 2
6.28.55-004	2
6.28.55-005	2
5.13.40-001	2 4
5.16.25-001	4
5.18.25-004	3 4
5.3.1-006	2 4
6.16.44-004	25 4
6.16.44-006	2 4
6.16.44-007	10 3
6.16.44-009	3
6.23.17-003	4
6.23.17-004	2 4
Bertiolle	2
Napoleon	2 4

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Pav-HB-01-1	Sweet Cherry-RosBREED-1.6K-2019	1	0	5

Projects


Project Name
RosBREED_Sweet_Cherry_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40
RosBREED_snp_sweet_cherry_Pp1_00348730	A	B	B	A	A	B	A	B	B	B	B	B	A	B	A	A	B	A	B	A	A	B	B	B	B	A	-	-	A	B	A	A	B	A	B	B	B	A	B
RosBREED_snp_sweet_cherry_Pp1_00538005	A	B	A	A	B	B	A	A	A	A	B	B	B	A	B	A	B	A	B	A	B	B	B	A	A	A	A	B	B	A	A	A	A	A	A	A	A	A	B
RosBREED_snp_sweet_cherry_Pp1_00599759	A	B	A	A	B	B	A	A	A	B	B	B	B	A	B	A	B	A	B	A	B	B	B	A	A	A	A	B	B	A	A	-	-	A	A	B	A	A	B
RosBREED_snp_sweet_cherry_Pp1_00726107	B	B	B	B	A	A	B	B	B	B	B	B	B	B	B	B	B	B	B	B	B	B	B	B	B	B	B	B	A	B	B	B	B	B	B	B	B	B	B
RosBREED_snp_sweet_cherry_Pp1_00885553	B	A	A	B	A	B	B	A	A	A	A	B	A	B	B	A	B	-	-	B	B	A	B	A	A	A	-	-	A	B	A	B	A	A	A	A	A	B	A
RosBREED_snp_sweet_cherry_Pp1_00917288	A	A	A	A	B	A	A	A	A	A	B	B	B	B	A	A	A	A	A	A	A	A	A	A	A	A	A	A	B	A	A	A	A	A	A	A	A	A	A
RosBREED_snp_sweet_cherry_Pp1_01010940	A	A	A	A	B	A	A	A	A	A	B	A	B	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	B	A	A	A	A	A	B	A	A	A	A
RosBREED_snp_sweet_cherry_Pp1_01111320	A	B	B	A	B	A	A	A	A	B	B	A	B	A	A	A	B	A	B	B	A	B	A	B	B	A	A	A	B	A	B	A	B	B	B	B	B	A	A
RosBREED_snp_sweet_cherry_Pp1_01176314	B	B	B	B	B	B	B	B	A	B	B	A	B	B	B	B	B	B	B	B	B	B	B	B	B	A	B	B	B	B	B	B	B	B	B	B	B	B	B
RosBREED_snp_sweet_cherry_Pp1_01197874	A	B	A	A	B	A	A	A	A	B	B	A	B	B	A	A	B	A	B	A	A	A	A	B	A	A	A	A	B	A	A	-	-	A	B	B	A	A	A
RosBREED_snp_sweet_cherry_Pp1_01238095	B	A	B	B	A	B	B	B	B	A	A	B	A	A	B	B	A	B	A	B	B	B	B	A	B	B	B	B	A	B	B	-	-	B	A	A	B	B	B
RosBREED_snp_sweet_cherry_Pp1_01331155	B	B	A	B	B	A	B	B	B	B	B	B	B	B	B	B	B	B	B	A	B	A	B	B	B	B	B	B	A	B	A	B	A	A	B	B	A	B	B
RosBREED_snp_tart_cherry_a_Pp1_00212925	A	A	A	B	B	B	B	B	B	B	B	B	B	B	B	A	A	A	A	A	A	A	A	A	A	A	A	B	B	A	A	A	A	A	B	A	-	-	A
RosBREED_snp_tart_cherry_a_Pp1_00694731	A	A	B	A	A	A	A	B	B	A	A	A	A	B	A	A	A	A	A	A	A	A	A	B	B	A	A	A	A	A	A	A	B	B	B	A	B	A	A
RosBREED_snp_tart_cherry_a_Pp1_01235182	B	A	B	B	A	B	B	B	B	A	A	B	A	A	B	B	A	B	A	B	B	B	B	A	B	B	B	B	A	B	B	-	-	B	A	A	B	B	B
RosCOS1201-071_snp_sweet_cherry_Pp1_00450381	B	A	A	B	A	A	A	B	B	B	B	B	A	B	A	B	A	-	-	B	A	A	A	A	A	B	B	A	A	A	B	B	A	B	B	A	A	B	A

Alignments

Feature Name	Type	Location	Analysis
Pp01	chromosome	Pp01:212924..1331014.	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)