Mdo-HB-17-5

Haplotype Block Overview
Name Mdo-HB-17-5
Species Malus x domestica
Stock Haplotype [view all 427]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 23 24
Rome Beauty Law 24 6
Jonafree 5 6
Redfree 10 5
Spartan 5
Wagener 5 7
Worcester Pearmain 46 5
Tsugaru 25 5
Golden Delicious 4 5
Fuji 10 5
Empire 16 5
Gala 24 5
Honeycrisp 5 7
Elstar 4 5
Marshall McIntosh 16 5
Cripps Pink 5
Granny Smith 15 5
Jonathan 24 25
Ralls Janet 10 3
Delicious 5
Discovery 4 5
Prima 5 6
Fiesta 23 5
Ingrid Marie 23 5
Idared 24 5
Esopus Spitzenburg 24 4
Braeburn 24 5
Sansa 24 46
Lodi 23 7
James Grieve 10 23
Cripps Red 5
Burgundy 24 5
Akane 25 46
Ambrosia 5
Aurora Golden Gala 24 5
Beacon 5
Ben Davis 10 22 5
Cameo 4 5
Chinook 5
Clivia 24 5
Co-op 17 5 7
Co-op 18 10 66
Dayton 16 24 5
Delblush 10 5
Delcorf 7
Delorgue 25 7
Dolgo 6
Geheimrat Dr. Oldenburg 5 59
Duchess of Oldenburg 6 7
Early Cortland 16 22 7
Empress 24 5
F2 26829-2-2 5 6
Fantazja 16 25
Fireside 6 7
Fortune 24 4
Frostbite 10 7
Ginger Gold 5 7
GMAL 4327 25 43
GMAL 4328 43 6
GMAL 4329 22 43
GMAL 4332 25 46
Goodland 32 6
Haralson 5 7
Honeygold 5
Hudson 5
Jersey Black 25 3
Jonamac 25 5
Keepsake 5 7
Kerr 5 6
Lady Williams 5
Liberty 5 6
Linda 22 25
Longfield 85 86
Macoun 25 5
Malinda 41 5
Mantet 31
Melba 5 6
Melrose 25 5
MN 1627 5 7
MN 1628 10 5
MN 1691 6
MN 1706 10 5
MN 1708 5 7
MN 1760 7
MN 1764 16 7
MN 1789 6 7
MN 1802 25 5
MN 1836 7
MN 1837 6 7
MN 1839 23 7
MN 1888 5 6
MN 1899 5 6
MN 1940 5 6
MN 2016 5 6
AA-44 6 7
Monroe 24
Montgomery 23 5
Nicola 24 5
NJ 31 6
NJ 53 16 6
Oriole 6 7
PRI 14-126 4 5
PRI 14-510 5 6
PRI 16-144 5
PRI 1661-2 5
PRI 855-102 5
Primula 4 6
Raritan 10 5
Regent 16 5
Russian Seedling 83
Sawa 16 6
Sciros 5
Sharon 16 6
Silken 5
Wildung 16 7
Splendour 5
State Fair 31 7
NJ 55 24 4
Co-op 29 5
Sunrise 5
Sweet Sixteen 11 7
Topaz 10 5
Vista Bella 16 24
Wealthy 25 7
Winesap 10 5
Winter Banana 4 5
Yellow Newtown 10 5
Yellow Transparent 6 7
0407-0001 5
0407-0005 5
0407-0006 5
0407-0007 5
0407-0008 24 5
0408-0003 24 5
0408-0004 24 5
0408-0005 24 5
0408-0007 24 5
0408-0008 5
0408-0010 24 5
0408-0011 5
0408-0014 5
0408-0015 24 5
0409-0022 5
0409-0024 24
0409-0028 24 7
0409-0030 5
0409-0032 24 7
0409-0035 24 7
0409-0036 24 5
0409-0038 24 7
0409-0039 5 7
0409-0040 24 7
0409-0043 24 7
0409-0045 5
0410-0002 15 24
0410-0003 5
0410-0005 24 5
0410-0006 5
0410-0010 15 24
0410-0011 24 5
0410-0012 15 24
0410-0013 15 5
0410-0015 15 5
0410-0017 5
0410-0018 15 5
0414-0010 5
0414-0015 5
0414-0017 5
0414-0018 5 7
0414-0019 5
0414-0020 5 7
0414-0021 5
0415-0001 5 7
0415-0004 5 7
0415-0005 5 7
0415-0011 5
0415-0012 5 7
0415-0013 5
0415-0014 5
0415-0016 5
0415-0017 5 7
0415-0019 5
0415-0020 5
0415-0025 5 7
AE_HCxJonf-145 5 6
AE_HCXJonf-148 5 7
AE_HCxJonf-157 5 7
AE_HCXJonf-162 5
AE_HCXJonf-168 4 5
AE_HCxJonf-175 5
AE_HCxJonf-183 6 7
AE_HCxJonf-185 5 6
AE0118-237 5
AE0118-238 5
AE0118-239 23 5
AE0118-240 5
AE0118-243 5 7
AE0118-244 16 7
AE0118-245 16 5
AE0118-246 16 7
AE0118-249 5
AE0206-159 5 7
AE0206-160 5 7
AE0206-161 5 7
AE0206-162 5 6
AE0206-163 5 7
AE0206-164 5 6
AE0206-165 5 7
AE0206-167 5 7
AE0206-168 5 6
AE0206-169 5 6
AE0206-170 5 7
AE0210-146 22 5
AE0210-147 43 5
AE0210-149 22 5
AE0210-150 43 5
AE0210-151 22 5
AE0210-152 5 6
AE0210-153 43 5
AE0210-154 43 5
AE0210-157 43 5
AE0210-158 22 5
AE0210-159 22 5
AE0210-162 22 5
AE0210-163 22 5
AE0210-164 22 5
AE0210-165 22 5
AE0210-166 22 5
AE0210-168 22 5
AE0210-169 22 5
AE0210-170 22 5
AE0210-171 22 5
AE0210-172 43 5
AE0210-173 43 5
AE0210-174 43 5
AE0213-175 25 5
AE0213-176 46 7
AE0213-177 46 5
AE0213-178 46 5
AE0213-179 46 7
AE0213-180 46 7
AE0213-181 46 5
AE0213-182 46 7
AE0213-183 25 7
AE0213-186 46 5
AE0213-187 25 7
AE0213-190 25 5
AE0213-193 25 7
AE0213-194 25 7
AE0213-195 46 7
AE0213-196 46 7
AE0213-197 25 5
AE0213-198 43 7
AE0213-199 46 5
AE0213-200 46 5
AE0213-201 46 7
AE0213-202 25 7
AE0213-205 46 7
AE0213-206 46 5
AE0251-323 11 5
AE0251-327 5 7
AE0251-329 5 7
AE0251-330 5 7
AE0251-331 11 5
AE0251-342 5 7
AE0251-343 11 5
AE0406-239 5 7
AE0406-254 5 7
AE0406-258 5
AE0406-259 5
AE0406-263 5 7
AE0406-264 5 7
AE0406-266 5
AE0406-271 5
AE0406-274 5
AE0406-278 5 7
AE0406-281 5 7
AE0406-286 5 7
AE0406-288 5 7
AE0406-289 5 7
AE0406-294 5
AE0406-298 5
Minneiska 5 7
NJ 303955 24
PRI 612-1 5
Arlet 5
Co-op 39 5
Pinova 24 5
Scired 24 5
Scifresh 5
0409-0025 24 7
0409-0026 5
0409-0027 5 7
0409-0031 5 7
0409-0033 5
0409-0047 5
G-14-050 10 5
G-14-052 10 24
G-14-054 10 24
G-14-055 10 24
G-14-056 10 5
G-14-057 24 5
G-14-059 24
G-14-060 10 24
G-14-061 10 5
G-14-062 10 24
G-14-064 10 5
G-14-065 10 24
G-14-069 10 24
G-14-067 24 5
G-14-071 24
G-14-073 24
G-14-074 24
G-14-075 24 5
G-14-076 24 5
G-14-077 24 5
G-14-078 24
G-14-080 24
G-09-232 24 7
G-09-233 24 5
G-09-234 24 5
G-09-235 24 7
G-09-236 24 5
G-09-237 24 7
G-09-238 24 5
G-09-239 5
G-09-240 5 7
G-09-241 24 7
G-09-242 24 7
G-09-243 24 7
G-09-245 24 7
G-09-246 24 7
G-09-258 24 7
G-09-259 24 5
G-09-260 24 7
G-09-261 24 5
G-09-262 24 7
G-09-263 5 7
G-09-264 24 7
G-09-265 24 7
G-09-266 24 7
G-09-267 24 7
G-09-268 24 7
0408-0021 24 5
Wijcik McIntosh 16 5
Beauty of Bath 4 64
Priam 25 4
Northern Spy 11 5
Co-op 15 5
MN 1702 6 7
WA 2 24 5
WA 5 5
Pitmaston Pineapple 4 5
0411-0011 5
0411-0017 5
0411-0023 5
AE0250-086 5 7
AE0250-087 5 7
AE0250-089 5 7
AE0250-090 5 7
AE0250-092 5 7
AE0250-093 5 7
AE0250-094 5 7
AE0250-095 5 7
Sonya 24 5
Co-op 38 4 7
AE0250-096 24 6
AE0250-327 5 6
Co-op 30 5
Jonagrimes 4 7
AE0211-036 43 5
G-07-039 46 5
PRI 14-152 5 6
PRI 47-176 24 5
G-07-041 10 24
BC-8S-27-43 5
AE0250-091 25 5
AE0250-097 25 7
AE0250-325 25 7
AE0250-326 25 5
AE0250-329 43 5
AE0250-333 25 5
AE0250-334 43 7
AE0250-335 25 7
AE0250-336 43 5
AE0250-341 43 5
AE0211-038 43 7
AE0211-043 5 6
AE0211-045 5 6
AE0211-051 5 6
G-07-010 24 5
G-07-014 24 5
G-07-015 46 5
G-07-019 15 46
G-07-020 15 24
G-07-024 24 5
G-07-032 15 24
G-07-033 15 46
G-07-034 24 5
G-07-035 15 46
G-07-044 15 46
AE0211-053 7
AE0211-054 5 7
AE0250-088 6 7
AE0250-324 5 6
AE0250-328 5 7
AE0250-331 5 6
AE0250-332 5 7
AE0250-337 5 7
AE0250-339 7
Minnewashta 6 7
Autumn Crisp 24 4
G-14-066 24 5
Lu1-11-010 5
Lu1-11-013 5
Lu1-11-016 10 4
Lu1-11-017 5
Lu1-11-018 4 5
NJ 90 16 5
Lord Lambourne 10 5
Antonovka GH 52 6
Grimes Golden 2 4
Kidds Orange Red 24 5
Malus baccata Hansen #2 22 59
Malus baccata Jackii 7
Summerred 64 7
William's Pride 23 5
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-17-5Apple-RosBREED-3.9K-2019173.445.11
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 23456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778798081828384858687888990919293949596
GDsnp00864BAABBB--BBBBBBBABB--AAABABBA-BBA------BB-BBBBABBBBBBABA--ABABABABAAB--BBB--ABA-BABBBBBBBBBBABBB
RosBREEDSNP_SNP_AG_1318292_Lg17_00864_MAF30_1643044_exon1BBBAABBAABAAABBAABABBBABAAABABAA------BA-BBABABABAAAB---BAABBBABAA--BABB-ABAAAA-BBABA--BA----BA
RosBREEDSNP_SNP_GA_1149469_Lg17_01241_MAF40_MDP0000131695_exon12BBBABBBAAAAAABABBBBBBBBBBAAB-BBB----BAAB-BBBBB--BABABAB-BBBBBBABBBBABABAABBA----AB-BBBB--------
RosBREEDSNP_SNP_GA_1159401_Lg17_01241_MAF30_362748_exon1--BBAB--BB---BB--B--BAAB--BBBABA------BBBBBABABB--B----B-B---BBBA-ABBBBBBABBAA-BABBBBBABABBAB--
RosBREEDSNP_SNP_GA_1334232_Lg17_00864_MAF40_1619924_exon8ABBBAAABABABAAABAA--BBBABB--BAABAB----AA-AAAAB--ABBBBBB-ABABAABBBBBAAB--BBABBBB-BABAAAAAAAB----
RosBREEDSNP_SNP_GT_1114546_Lg17_01241_MAF10_MDP0000283052_exon2--BBBBBBBBBB-ABBBA--BBBB--BBBBBBBBBBBBBABABBBBBB--BBBBB-BBBBBB--BBBBBBBBBBBBBBBBB-B--BBBBBB--BB
RosBREEDSNP_SNP_TC_1314921_Lg17_00864_MAF20_88118_exon1--AAAAAAAA---AB--null--BBAnull--AAAAAB--A---AA-B--B-AABAAAA--AnullAA--nullAAAAAABABBAAAAAAAABBAAAAAAAnullA--AA
Alignments
Feature NameTypeLocationAnalysis
Chr17 chromosome Chr17:1378507..1612136. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation