Mdo-HB-17-46

Haplotype Block Overview
Name Mdo-HB-17-46
Species Malus x domestica
Stock Haplotype [view all 427]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 17 5
Rome Beauty Law 8
Jonafree 5 8
Redfree 4 8
Spartan 5 8
Wagener 4
Worcester Pearmain 30 5
Tsugaru 4 8
Golden Delicious 4 5
Fuji 5 8
Empire 10 8
Gala 17 5
Honeycrisp 5 8
Elstar 17 4
Marshall McIntosh 11 8
Cripps Pink 5 8
Granny Smith 4 8
Jonathan 5 8
Ralls Janet 8
Delicious 10 5
Discovery 30 8
Prima 5 8
Fiesta 17 4
Ingrid Marie 17 8
Idared 4 8
Esopus Spitzenburg 4 5
Braeburn 5 8
Sansa 17 8
Lodi 10 8
James Grieve 17 4
Cripps Red 5 8
Burgundy 5 8
Akane 30 8
Ambrosia 10 4
Aurora Golden Gala 17 5
Beacon 4 5
Ben Davis 10 4 8
Cameo 10 5
Chinook 17 5
Clivia 11 17
Co-op 17 10 8
Co-op 18 5 8
Dayton 8
Delblush 10 5
Delcorf 4
Delorgue 30 4
Dolgo 5
Geheimrat Dr. Oldenburg 11 17
Duchess of Oldenburg 4 6
Early Cortland 10 11 4
Empress 11 8
F2 26829-2-2 4 8
Fantazja 11 5
Fireside 4
Fortune 5 6
Frostbite 6 8
Ginger Gold 10 4
GMAL 4327 10 5
GMAL 4328 10 5
GMAL 4329 5 6
GMAL 4332 5
Goodland 29 5
Haralson 5
Honeygold 5
Hudson 10 4
Jersey Black 2 4
Jonamac 11 8
Keepsake 4 8
Kerr 5
Lady Williams 8
Liberty 4
Linda 5 8
Longfield 40
Macoun 11 4
Malinda 4 5
Mantet 28 8
Melba 5 8
Melrose 10 5
MN 1628 4 6
MN 1691 4 5
MN 1706 4
MN 1708 4 5
MN 1760 6 8
MN 1764 5 6
MN 1789 5
MN 1802 5 8
MN 1836 5 8
MN 1837 5
MN 1839 5 6
MN 1888 4 5
MN 1899 5 8
MN 1940 5 8
MN 2016 8
AA-44 5
Monroe 8
Montgomery 10 4
Nicola 17 5
NJ 31 8
NJ 53 5 8
Oriole 4 5
PRI 14-126 4
PRI 14-510 5 8
PRI 16-144 5
PRI 1661-2 5 8
PRI 54-12 4
PRI 855-102 5
Primula 5 8
Raritan 29 5
Regent 5 8
Russian Seedling 10 4
Sawa 11 8
Sciros 5
Sharon 11 5
Silken 5 8
Wildung 11 4
Splendour 5
State Fair 5 8
NJ 55 11 4
Co-op 29 5 8
Sunrise 4 8
Sweet Sixteen 4 8
Topaz 17 5
Vista Bella 8
Wealthy 4 5
Winesap 10
Winter Banana 5 8
Yellow Newtown 10 8
Yellow Transparent 5 8
0407-0001 5 8
0407-0005 5
0407-0006 5
0407-0007 17 8
0407-0008 5 8
0408-0003 17 8
0408-0004 8
0408-0005 17 8
0408-0007 17 8
0408-0008 5 8
0408-0010 5 8
0408-0011 5 8
0408-0014 17 8
0408-0015 17 8
0409-0022 17 8
0409-0024 17 5
0409-0028 5 8
0409-0030 17 5
0409-0032 17 5
0409-0035 5 8
0409-0036 17 8
0409-0038 5 8
0409-0039 17 5
0409-0040 17 8
0409-0043 17 5
0409-0045 17 5
0410-0002 5 8
0410-0003 4 5
0410-0005 17 4
0410-0006 17 8
0410-0010 17 4
0410-0011 17 8
0410-0012 17 4
0410-0013 5 8
0410-0015 4 5
0410-0017 17 4
0410-0018 8
0414-0010 8
0414-0015 8
0414-0017 5 8
0414-0018 5 8
0414-0019 5 8
0414-0020 17 8
0414-0021 8
0415-0001 5 8
0415-0004 8
0415-0005 8
0415-0011 5 8
0415-0012 17 5
0415-0013 17 5
0415-0014 17 5
0415-0016 8
0415-0017 17 5
0415-0019 17 8
0415-0020 5 8
0415-0025 17 8
AE_HCxJonf-145 5 8
AE_HCXJonf-148 8
AE_HCxJonf-157 5 8
AE_HCXJonf-162 8
AE_HCXJonf-168 4 5
AE_HCxJonf-175 5 8
AE_HCxJonf-183 8
AE_HCxJonf-185 5 8
AE0118-237 5 8
AE0118-238 8
AE0118-239 6 8
AE0118-240 5 8
AE0118-243 8
AE0118-244 8
AE0118-245 5
AE0118-246 5 8
AE0118-249 5 8
AE0206-159 5 8
AE0206-160 5 8
AE0206-161 5 8
AE0206-162 17 8
AE0206-163 5 8
AE0206-164 17 5
AE0206-165 17 5
AE0206-167 5 8
AE0206-168 17 8
AE0206-170 17 8
AE0210-146 4 6
AE0210-147 5 8
AE0210-149 5 8
AE0210-150 6 8
AE0210-151 4 5
AE0210-152 4 5
AE0210-153 6 8
AE0210-154 5 8
AE0210-157 4 5
AE0210-158 4 5
AE0210-159 4 6
AE0210-162 5 8
AE0210-163 6 8
AE0210-164 4 5
AE0210-165 4 5
AE0210-166 4 5
AE0210-168 4 5
AE0210-169 4 5
AE0210-170 4 6
AE0210-171 6 8
AE0210-172 6 8
AE0210-173 4 6
AE0210-174 4 5
AE0213-175 4 5
AE0213-176 4 5
AE0213-177 4 5
AE0213-178 10 5
AE0213-179 4 5
AE0213-180 4 5
AE0213-181 4 5
AE0213-182 10 5
AE0213-183 4 5
AE0213-186 10 5
AE0213-187 10 5
AE0213-190 10 5
AE0213-193 10 5
AE0213-194 10 5
AE0213-195 10 5
AE0213-196 10 5
AE0213-197 10 5
AE0213-198 10 5
AE0213-199 4 5
AE0213-200 10 5
AE0213-201 10 5
AE0213-202 10 5
AE0213-205 10 5
AE0213-206 4 5
AE0251-323 5 8
AE0251-325 17 8
AE0251-327 17 8
AE0251-329 5 8
AE0251-330 17 4
AE0251-331 5 8
AE0251-342 17 4
AE0251-343 4 5
AE0406-239 5 8
AE0406-254 5 8
AE0406-258 5 8
AE0406-259 5 8
AE0406-263 5
AE0406-264 5
AE0406-266 5
AE0406-271 5 8
AE0406-274 5 8
AE0406-278 5 8
AE0406-281 5 8
AE0406-286 5 8
AE0406-288 5
AE0406-289 5
AE0406-294 5 8
AE0406-298 5
Minneiska 5 8
NJ 303955 11
PRI 612-1 4 5
Arlet 5 8
Co-op 39 4 8
Pinova 11 5
Scired 5
Scifresh 5 8
0409-0025 17 8
0409-0026 17 5
0409-0027 17 8
0409-0031 5 8
0409-0033 17 5
0409-0047 5 8
G-14-050 5 8
G-14-052 11 4
G-14-054 11 8
G-14-055 11 8
G-14-056 4 5
G-14-057 11 8
G-14-059 11 8
G-14-060 4 5
G-14-061 11 4
G-14-062 4 5
G-14-064 11 4
G-14-065 4 5
G-14-069 11 4
G-14-067 4 5
G-14-068 11 4
G-14-071 5 8
G-14-073 5 8
G-14-074 4 5
G-14-075 5 8
G-14-076 5 8
G-14-077 5 8
G-14-078 11 8
G-14-080 11 8
G-09-232 10 8
G-09-233 4 5
G-09-234 10 5
G-09-235 10 5
G-09-236 10 5
G-09-237 4 5
G-09-238 10 5
G-09-239 4 8
G-09-240 4 5
G-09-241 10 5
G-09-242 4 5
G-09-243 10 8
G-09-245 4 8
G-09-246 10 5
G-09-258 4 5
G-09-259 10 8
G-09-260 4 8
G-09-261 10 5
G-09-262 4 5
G-09-263 10 5
G-09-264 10 8
G-09-265 4 8
G-09-266 10 8
G-09-267 10 5
G-09-268 10 5
0408-0021 17 8
Wijcik McIntosh 39 5
Beauty of Bath 8
Priam 4 8
Northern Spy 4 8
Co-op 15 4 8
MN 1702 4 8
WA 2 17 5
WA 5 5 8
Pitmaston Pineapple 10 8
0411-0011 17 8
0411-0017 5 8
0411-0023 17 8
AE0250-086 5 8
AE0250-087 17 8
AE0250-089 5 8
AE0250-090 17 4
AE0250-092 5 8
AE0250-093 17 8
AE0250-094 4 5
AE0250-095 17 4
Sonya 5 8
Co-op 38 10 5
AE0250-096 5 8
AE0250-327 4 8
Co-op 30 17 8
Jonagrimes 2 6
AE0211-036 4 5
G-07-039 10 17
PRI 14-152 4 5
G-07-041 5 8
BC-8S-27-43 17 5
AE0250-091 10 5
AE0250-097 10 8
AE0250-325 10 5
AE0250-326 5 8
AE0250-329 10 8
AE0250-333 5
AE0250-334 10 8
AE0250-335 5
AE0250-336 5
AE0250-338 10 8
AE0250-341 5
AE0211-038 10
AE0211-043 10 5
AE0211-051 10
G-07-010 17 8
G-07-014 17 4
G-07-015 17 8
G-07-019 4 8
G-07-020 8
G-07-024 17 4
G-07-032 4 8
G-07-033 8
G-07-034 4 8
G-07-035 17 4
G-07-044 4 8
AE0211-053 4 8
AE0211-054 4 8
AE0250-088 5 8
AE0250-324 5 8
AE0250-328 5 8
AE0250-331 8
AE0250-332 8
AE0250-337 8
AE0250-339 8
Minnewashta 5 8
Autumn Crisp 4 8
G-14-066 11 4
Lu1-11-010 8
Lu1-11-013 8
Lu1-11-016 4 8
Lu1-11-017 5 8
Lu1-11-018 8
NJ 90 5 8
Lord Lambourne 17 5
Antonovka GH 4 5
Grimes Golden 2 4
Kidds Orange Red 17 5
Malus baccata Hansen #2 30 8
Malus baccata Jackii 10 11
Summerred 5
William's Pride 8
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-17-46Apple-RosBREED-3.9K-20191760.2560.26
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 234567891011121314151617181920212223242526272829303132333435363738394041
RosBREEDSNP_SNP_GA_22813928_Lg17_00798_MAF30_MDP0000751968_exon1--BBBBB-BA---BBA---BABBB---BABBBABAB-A-A
RosBREEDSNP_SNP_GA_23178125_Lg17_02534_MAF50_MDP0000515341_exon1ABBAA-AAAAAAAABB-BAAB------BABAAA--B-AAB
RosBREEDSNP_SNP_GA_23182572_Lg17_02534_MAF40_1660008_exon1--BBA-ABBB-BBBBBBBAAAAB--ABAB---BBBBAAA-
RosBREEDSNP_SNP_TC_22794175_Lg17_00798_MAF20_476896_exon1--AAB-A-BBAAB--AAAA-AABAA--AAAA--AABABB-
Alignments
Feature NameTypeLocationAnalysis
Chr17 chromosome Chr17:29518678..29986197. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation