Mdo-HB-17-44

Haplotype Block Overview
Name Mdo-HB-17-44
Species Malus x domestica
Stock Haplotype [view all 384]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 11 4
Rome Beauty Law 10 27
Jonafree 5 9
Redfree 13 66
Spartan 11 5
Wagener 19 5
Worcester Pearmain 50 9
Tsugaru 11 4
Golden Delicious 4 5
Fuji 11 9
Empire 5
Gala 4 5
Honeycrisp 5 8
Elstar 4
Marshall McIntosh 4 5
Cripps Pink 13 5
Granny Smith 13 4
Jonathan 11
Ralls Janet 12 9
Delicious 11 5
Discovery 50 9
Prima 5 6
Fiesta 19 4
Ingrid Marie 4 5
Idared 11 19
Esopus Spitzenburg 11 4
Braeburn 11 8
Sansa 11 4
Lodi 13 9
James Grieve 4 5
Burgundy 27 51
Akane 11 50
Ambrosia 4 5
Aurora Golden Gala 11 4
Beacon 6
Ben Davis 4 5 8
Cameo 5
Chinook 11 4
Clivia 4
Co-op 17 10 5
Co-op 18 10 42
Dayton 10 6
Delblush 5
Delorgue 4 50
Dolgo 41 52
Geheimrat Dr. Oldenburg 4
Duchess of Oldenburg 5 6
Early Cortland 13 4 8
Empress 4 5
F2 26829-2-2 10 8
Fantazja 11 4
Fireside 4 6
Fortune 5
Frostbite 5 8
Ginger Gold 13 5
GMAL 4327 5
GMAL 4328 5
GMAL 4329 41 5
GMAL 4332 4 5
Goodland 5 6
Haralson 11 13
Honeygold 13 5
Hudson 4 5
Jersey Black 21 5
Jonamac 11 4
Keepsake 4 8
Kerr 13 41
Lady Williams 11 13
Liberty 5 8
Linda 11 9
Liveland Raspberry 6 8
Longfield 27 68
Macoun 4 5
Malinda 13 8
Mantet 39 5
Melba 5 6
Melrose 11 5
MN 1628 4 5
MN 1691 6
MN 1706 4 8
MN 1708 4 5
MN 1760 5 8
MN 1764 11 5
MN 1789 5 6
MN 1802 5 8
MN 1836 13 8
MN 1837 5 6
MN 1839 11 5
MN 1888 5 6
MN 1899 13 8
MN 1940 5 6
MN 2016 11 5
AA-44 6
Monroe 11 27
Montgomery 13 5
Nicola 4 5
NJ 53 5 6
Oriole 6 8
PRI 14-126 4 8
PRI 14-510 10 5
PRI 1661-2 11 5
PRI 54-12 6 8
PRI 855-102 11 5
Primula 11 6
Raritan 10 6
Regent 13 5
Russian Seedling 4 5
Sawa 11 4
Sciros 11 5
Sharon 35 4
Silken 10 13
Wildung 4 6
Splendour 11 5
State Fair 13 5
NJ 55 4
Co-op 29 5
Sunrise 10 4
Sweet Sixteen 4 8
Topaz 4 9
Vista Bella 5
Wealthy 11 6
Winesap 10 5
Winter Banana 5
Yellow Newtown 27 42
Yellow Transparent 6 9
0407-0001 11
0409-0045 4 5
0410-0006 13 4
0410-0017 4
0414-0010 11 5
0414-0015 11 8
0414-0017 11 5
0414-0018 5
0414-0019 11 5
0415-0001 5
0415-0004 5 8
0415-0005 5 8
0415-0011 5
0415-0012 4 5
0415-0013 4 5
0415-0014 4 5
0415-0016 5 8
0415-0017 4 5
0415-0019 4 8
0415-0020 5
0415-0025 4 8
AE_HCxJonf-145 5 8
AE_HCXJonf-148 8 9
AE_HCxJonf-157 5 8
AE_HCXJonf-168 4 5
AE_HCxJonf-175 5 8
AE_HCxJonf-183 8 9
AE_HCxJonf-185 5 8
AE0118-237 5
AE0118-238 5 8
AE0118-239 5 8
AE0118-240 13 8
AE0118-243 5 8
AE0118-244 5 8
AE0118-245 13 5
AE0118-246 5
AE0118-249 13 8
AE0206-159 5
AE0206-160 5
AE0206-161 5
AE0206-162 4 5
AE0206-163 5
AE0206-164 4 6
AE0206-165 4 6
AE0206-167 5
AE0206-168 4 5
AE0206-169 4 6
AE0206-170 4 5
AE0210-146 4 41
AE0210-147 10 5
AE0210-149 10 5
AE0210-150 10 41
AE0210-151 4 5
AE0210-152 4 6
AE0210-153 10 41
AE0210-154 10 5
AE0210-157 4 5
AE0210-158 4 5
AE0210-159 4 41
AE0210-162 10 5
AE0210-163 10 41
AE0210-164 4 5
AE0210-165 10
AE0210-166 4 5
AE0210-168 4 5
AE0210-169 4 5
AE0210-170 4 41
AE0210-171 10 41
AE0210-172 10 5
AE0210-173 4 41
AE0210-174 4 5
AE0213-175 5
AE0213-176 4 5
AE0213-177 5
AE0213-178 13 5
AE0213-179 5
AE0213-180 5
AE0213-181 5
AE0213-182 13 4
AE0213-183 4 5
AE0213-186 13 5
AE0213-187 13 5
AE0213-190 13 4
AE0213-193 13 4
AE0213-194 13 4
AE0213-195 13 4
AE0213-196 13 5
AE0213-197 13 4
AE0213-198 13 5
AE0213-199 5
AE0213-200 13 5
AE0213-201 13 5
AE0213-202 13 4
AE0213-205 13 4
AE0213-206 5
AE0251-323 5 8
AE0251-325 4 8
AE0251-327 4 8
AE0251-329 5 8
AE0251-330 4
AE0251-331 5 8
AE0251-342 4
AE0251-343 4 5
AE0406-239 13 8
AE0406-254 13 8
AE0406-258 13 8
AE0406-259 13 8
AE0406-263 13 5
AE0406-264 13 8
AE0406-266 13 5
AE0406-271 13 8
AE0406-274 13 8
AE0406-278 13 8
AE0406-281 13 8
AE0406-286 13 8
AE0406-288 13 5
AE0406-289 13 5
AE0406-294 13 8
AE0406-298 13 5
Minneiska 6 8
PRI 612-1 11 4
Arlet 11 5
Co-op 39 23 27
Pinova 4 5
Scired 11 5
Scifresh 5 8
0409-0025 4 8
0409-0026 4 5
0409-0027 4 8
0409-0031 11 8
0409-0033 4 5
0409-0047 11 8
G-14-050 5 9
G-14-052 4
G-14-054 4 9
G-14-055 4 9
G-14-056 4 5
G-14-057 4 9
G-14-059 4 9
G-14-060 5 9
G-14-061 4
G-14-062 4 5
G-14-064 4
G-14-065 4 5
G-14-069 4
G-14-067 4 5
G-14-068 4
G-14-071 5 9
G-14-073 5 9
G-14-075 5 9
G-14-076 5 9
G-14-077 5 9
G-14-080 4 9
G-09-232 13 8
G-09-233 11 5
G-09-234 11 13
G-09-235 11 13
G-09-236 11 13
G-09-237 11 5
G-09-238 11 13
G-09-239 5 8
G-09-240 11 5
G-09-241 11 13
G-09-242 11 5
G-09-243 13 8
G-09-245 5 8
G-09-246 11 13
G-09-258 11 5
G-09-259 13 8
G-09-260 5 8
G-09-261 11 13
G-09-262 11 5
G-09-263 11 13
G-09-264 13 8
G-09-265 5 8
G-09-266 13 8
G-09-267 11 13
G-09-268 11 13
Wijcik McIntosh 4 5
Beauty of Bath 61 9
Priam 11 8
Northern Spy 4 9
Co-op 15 4 6
MN 1702 4 8
WA 2 4 5
WA 5 5 6
Pitmaston Pineapple 33 5
0411-0023 11 4
AE0250-086 5 8
AE0250-087 4 8
AE0250-089 5 8
AE0250-090 4
AE0250-092 5 8
AE0250-093 4 8
AE0250-094 4 5
AE0250-095 4
Sonya 5 8
Co-op 38 5
AE0250-096 10 6
AE0250-327 10 6
Co-op 30 4 5
Jonagrimes 2 5
AE0211-036 5
G-07-039 11 5
PRI 14-152 5 8
PRI 47-176 11 8
G-07-041 11
BC-8S-27-43 4 5
AE0250-091 5
AE0250-097 5 8
AE0250-325 5
AE0250-326 5 8
AE0250-329 5 8
AE0250-333 5
AE0250-334 5 8
AE0250-335 5
AE0250-336 5
AE0250-338 5 8
AE0250-341 5
AE0211-038 13 5
AE0211-043 13 5
AE0211-045 5
AE0211-051 13 5
G-07-010 13 4
G-07-014 4
G-07-019 11 4
G-07-020 11 13
G-07-024 4
G-07-032 11 4
G-07-033 11 13
G-07-034 11 4
G-07-035 4
G-07-044 11 4
AE0211-053 5
AE0211-054 5
AE0250-088 6 8
AE0250-324 6 8
AE0250-328 5
AE0250-331 5 8
AE0250-332 5 8
AE0250-337 5 8
AE0250-339 5 8
Minnewashta 5 6
Autumn Crisp 27 4
G-14-066 4
Lu1-11-010 11 5
Lu1-11-013 5 9
Lu1-11-016 4 9
Lu1-11-017 11 5
Lu1-11-018 5 9
NJ 90 11 5
Lord Lambourne 4 9
Antonovka GH 5 51
Grimes Golden 2 4
Kidds Orange Red 11 4
Malus baccata Hansen #2 5 50
Malus baccata Jackii 5
Summerred 5 69
William's Pride 10 5
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-17-44Apple-RosBREED-3.9K-20191756.657.17
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 23456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778
GDsnp01525BAABB-BBBBBBBB-BABBBBABBAB-----BBBBB---BBBBBAABBBBBBB--BB-ABB--ABBBBABBB---AA
RosBREEDSNP_SNP_AG_21057103_Lg17_01525_MAF40_1633465_exon4--AAB-BAAB-A-----AB-BAA--A--AB-AAA--ABAAA---AA--AAB------BA--AAABBA---BAA--A-
RosBREEDSNP_SNP_AG_21194074_Lg17_00423_MAF30_1624199_exon13--AAAAAAAB-AAAABAAB-AAB--AAAABAAAAAAAAAAA---AA--AAAAA--A-BA--AAAAAA-ABAAAABAA
RosBREEDSNP_SNP_CT_21201745_Lg17_00423_MAF30_623380_exon1ABBBBBAAABABAAABBABBBBBBBABA---ABAAB--BBBBBABABABBBBBABABBABAABAABBB-------AB
RosBREEDSNP_SNP_GA_21072594_Lg17_01525_MAF50_MDP0000152654_exon5--BBA-BABA-B---ABAA-ABBBBBBBBA-ABABBBABAA-ABBBBABBBABBAB-AB--BBBABA-BA---BAA-
RosBREEDSNP_SNP_GA_21188396_Lg17_00423_MAF50_MDP0000538106_exon1ABBBA-BAAABAAB-ABBAABAAABB-----BBBBBBABABBABBBBABAAAABAAAAB--AAAABB-BA---BAAB
RosBREEDSNP_SNP_GT_21095267_Lg17_01525_MAF20_13554_exon3BBBBBBBBBABBBBBABB-BBBABBBBBBABA--BB--BBBBBB-BABAABBB--BAAABBBBBBBAABABBBBABB
Alignments
Feature NameTypeLocationAnalysis
Chr17 chromosome Chr17:28348358..28509229. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation