Mdo-HB-17-42

Haplotype Block Overview

Name	Mdo-HB-17-42
Species	Malus x domestica
Stock Haplotype	[view all 422]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Cox's Orange Pippin	13 7
Rome Beauty Law	21 3
Jonafree	2 9
Redfree	21 4
Spartan	2 3
Wagener	4 8
Worcester Pearmain	9
Tsugaru	2 7
Golden Delicious	2
Fuji	2 9
Empire	12 3
Gala	13 2
Honeycrisp	2 8
Elstar	13 2
Marshall McIntosh	13 3
Cripps Pink	2
Granny Smith	2 8
Jonathan	7
Delicious	12 2
Discovery	9
Prima	13 2
Fiesta	13 8
Ingrid Marie	13
Idared	7 8
Esopus Spitzenburg	2 7
Braeburn	2 24
Sansa	13 7
Lodi	35 4
James Grieve	13
Cripps Red	2
Burgundy	13 3
Akane	7 9
Ambrosia	12 2
Aurora Golden Gala	13 2
Beacon	16 49
Ben Davis	19 2 4 7
Cameo	50
Chinook	13 2
Clivia	13
Co-op 17	21 7
Co-op 18	24 61
Dayton	2 21
Delblush	2 7
Delcorf	2
Delorgue	2 9
Dolgo	2 54
Geheimrat Dr. Oldenburg	13 24
Duchess of Oldenburg	3 4
Early Cortland	13 35 4
Empress	13 3
F2 26829-2-2	21 4
Fantazja	13 7
Fireside	2 4
Fortune	2
Frostbite	7 8
Ginger Gold	2 35
GMAL 4327	13
GMAL 4328	13
GMAL 4329	13 8
GMAL 4332	13 8
Goodland	13 4
Haralson	3 7
Honeygold	2 3
Hudson	12 2
Jonamac	13 7
Keepsake	2 8
Kerr	2 3
Lady Williams	2 7
Liberty	13 21
Linda	2 7
Liveland Raspberry	50 7
Longfield	3 86
Macoun	13
Malinda	3 4
Mantet	3
Melba	3 7
Melrose	12 7
MN 1627	2 3
MN 1628	2 7
MN 1691	13 4
MN 1706	60 61
MN 1708	2
MN 1760	7 8
MN 1764	7
MN 1789	13 2
MN 1802	2 8
MN 1836	3 8
MN 1837	13 2
MN 1839	3 7
MN 1888	2 4
MN 1899	3 8
MN 1940	13 3
MN 2016	3 7
AA-44	13 9
Monroe	3 7
Montgomery	35 4
Nicola	13 2
NJ 31	9
NJ 53	13 9
Oriole	4 50
PRI 14-126	2 4
PRI 16-144	2
PRI 1661-2	2 3
PRI 54-12	21 4
PRI 855-102	2
Primula	7
Raritan	21 9
Regent	3
Russian Seedling	13
Sawa	13 7
Sciros	2
Sharon	13 8
Silken	21 3
Wildung	13 4
Splendour	2
State Fair	3
NJ 55	13 2
Co-op 29	2 4
Sunrise	2 21
Sweet Sixteen	2 8
Topaz	13 9
Vista Bella	3 9
Wealthy	4 7
Winesap	12 7
Winter Banana	2 9
Yellow Newtown	19 23
Yellow Transparent	3 4
0407-0001	2 7
0407-0005	2
0407-0006	2
0407-0007	2 7
0407-0008	2 7
0408-0003	13 3
0408-0004	13 3
0408-0005	13 3
0408-0007	13 3
0408-0008	2 21
0408-0010	2 3
0408-0011	2 3
0408-0014	13 3
0408-0015	13 21
0409-0022	2 8
0409-0024	13 8
0409-0028	2 8
0409-0030	13 2
0409-0032	13 2
0409-0035	13 8
0409-0036	13 8
0409-0038	2 8
0409-0039	2
0409-0040	13 8
0409-0043	13
0409-0045	13 2
0410-0002	2
0410-0003	2 8
0410-0005	13 8
0410-0006	2 8
0410-0010	13 8
0410-0011	13 2
0410-0012	13 8
0410-0013	2
0410-0015	13 8
0410-0017	13 8
0410-0018	2
0414-0010	2 7
0414-0015	7 8
0414-0017	2 7
0414-0018	2 21
0414-0019	2 7
0414-0020	21 8
0414-0021	7 8
0415-0001	3 8
0415-0004	21 8
0415-0005	3 8
0415-0011	2 3
0415-0012	21 8
0415-0013	2 21
0415-0014	13 2
0415-0017	2 21
0415-0019	21 8
0415-0020	2 3
0415-0025	21 8
AE_HCxJonf-145	2 8
AE_HCXJonf-148	8 9
AE_HCxJonf-157	2 8
AE_HCXJonf-162	2
AE_HCXJonf-168	2
AE_HCxJonf-175	2 8
AE_HCxJonf-183	8 9
AE_HCxJonf-185	2 8
AE0118-237	2 3
AE0118-238	3 8
AE0118-239	7 8
AE0118-240	3 8
AE0118-243	3 8
AE0118-244	3 8
AE0118-245	2 3
AE0118-246	2 3
AE0118-249	3 8
AE0206-159	2 3
AE0206-160	2 3
AE0206-161	2 3
AE0206-162	13 3
AE0206-163	2 3
AE0206-164	13
AE0206-165	13
AE0206-168	13 3
AE0206-169	13
AE0206-170	13 3
AE0210-146	21 8
AE0210-147	13 21
AE0210-149	13 21
AE0210-150	21 8
AE0210-151	13 2
AE0210-152	13 2
AE0210-153	21 8
AE0210-154	13 21
AE0210-157	13 2
AE0210-158	2 8
AE0210-159	2 8
AE0210-162	13 21
AE0210-163	21 8
AE0210-164	13 2
AE0210-165	2 8
AE0210-166	13 2
AE0210-168	2 8
AE0210-169	2 8
AE0210-170	2 8
AE0210-171	13 21
AE0210-172	13 21
AE0210-173	2 8
AE0210-174	13 2
AE0213-175	2 8
AE0213-176	2 8
AE0213-177	13 2
AE0213-178	13 35
AE0213-179	13 35
AE0213-180	13 2
AE0213-181	13 2
AE0213-182	35 8
AE0213-183	2 8
AE0213-186	13 2
AE0213-187	13 35
AE0213-190	35 8
AE0213-193	35 8
AE0213-194	35 8
AE0213-195	35 8
AE0213-196	13 35
AE0213-197	2 8
AE0213-198	13 35
AE0213-199	2 8
AE0213-200	13 35
AE0213-201	13 35
AE0213-202	35 8
AE0213-205	35 8
AE0213-206	13 2
AE0251-323	2 8
AE0251-325	13 8
AE0251-327	13 8
AE0251-329	2 8
AE0251-330	13 2
AE0251-331	2 8
AE0251-342	13 2
AE0251-343	2
AE0406-239	3 8
AE0406-254	3 8
AE0406-258	3 8
AE0406-259	3 8
AE0406-263	2 3
AE0406-264	3 8
AE0406-266	2 3
AE0406-271	3 8
AE0406-274	3 8
AE0406-278	3 8
AE0406-281	3 8
AE0406-286	3 8
AE0406-288	2 3
AE0406-289	2 3
AE0406-294	3 8
AE0406-298	2 21
Minneiska	13 8
NJ 303955	13
PRI 612-1	2
Arlet	2 7
Co-op 39	17 32
Pinova	13 2
Scired	2
Scifresh	2 24
0409-0025	13 8
0409-0026	2
0409-0027	13 8
0409-0031	2 8
0409-0033	2
0409-0047	2 8
G-14-050	2 9
G-14-052	13 9
G-14-054	13 9
G-14-055	13 9
G-14-056	2
G-14-057	13 9
G-14-059	13 9
G-14-060	2 9
G-14-061	13 2
G-14-062	2
G-14-064	13 2
G-14-065	2
G-14-069	13 2
G-14-067	2
G-14-068	13 2
G-14-071	2 9
G-14-073	2 9
G-14-074	2 9
G-14-075	2 9
G-14-076	2 9
G-14-077	2 9
G-14-078	13 2
G-14-080	13 9
G-09-232	24 35
G-09-233	2
G-09-234	2 35
G-09-235	2 35
G-09-236	2 35
G-09-237	2
G-09-238	2 35
G-09-239	2 24
G-09-240	2
G-09-241	2 35
G-09-242	2 24
G-09-243	24 35
G-09-245	2 24
G-09-246	2 35
G-09-258	2
G-09-259	24 35
G-09-260	2 24
G-09-261	2 35
G-09-262	2
G-09-263	2 35
G-09-264	24 35
G-09-265	2 24
G-09-266	24 35
G-09-267	2 35
G-09-268	2 35
0408-0021	13 21
Wijcik McIntosh	16 17
Beauty of Bath	69 9
Priam	4 7
Northern Spy	2 9
Co-op 15	13 2
MN 1702	2 8
WA 2	13 2
WA 5	13 2
Pitmaston Pineapple	19 2
0411-0011	21 7
0411-0017	2 3
0411-0023	3 7
AE0250-086	2 8
AE0250-087	13 8
AE0250-089	2 8
AE0250-090	13 2
AE0250-092	2 8
AE0250-093	13 8
AE0250-094	2
AE0250-095	13 2
Sonya	2 24
Co-op 38	2 7
AE0250-096	13 2
AE0250-327	2 4
Co-op 30	21 3
AE0211-036	13 2
G-07-039	11 7
G-07-041	2 7
BC-8S-27-43	13 2
AE0250-091	13 2
AE0250-097	13 8
AE0250-325	13 2
AE0250-326	13 8
AE0250-329	13 8
AE0250-333	13 2
AE0250-334	13 8
AE0250-335	13 2
AE0250-336	13 2
AE0250-338	13 8
AE0250-341	13 2
AE0211-038	13 35
AE0211-043	13 35
AE0211-045	13 2
AE0211-051	13 35
G-07-010	13 2
G-07-014	13 8
G-07-015	13 2
G-07-019	7 8
G-07-020	2 7
G-07-024	13 8
G-07-032	7 8
G-07-033	2 7
G-07-034	7 8
G-07-044	7 8
AE0211-053	2 3
AE0211-054	2 3
AE0250-088	13 8
AE0250-324	13 8
AE0250-328	2 3
AE0250-331	13 2
AE0250-332	3 8
AE0250-337	3 8
AE0250-339	3 8
Minnewashta	13 3
Autumn Crisp	2 3
G-14-066	13 2
Lu1-11-010	2 3
Lu1-11-013	3 9
Lu1-11-016	2 9
Lu1-11-017	2 3
Lu1-11-018	3 9
NJ 90	3 7
Lord Lambourne	13 9
Antonovka GH	16 17
Kidds Orange Red	13 2
Malus baccata Hansen #2	13 4
Malus baccata Jackii	17 87
Summerred	2
William's Pride	21 9

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Mdo-HB-17-42	Apple-RosBREED-3.9K-2019	17	51.92	51.92

Projects


Project Name
RosBREED_Apple_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94
RosBREEDSNP_SNP_AC_22045776_Lg5_RosCOS3072_MAF30_984966_exon1	A	A	A	A	A	A	A	A	-	-	A	B	-	-	B	A	-	A	A	A	A	A	A	A	B	A	-	A	A	B	B	null	null	null	A	A	A	A	-	-	-	A	A	A	null	-	A	A	null	-	A	A	A	-	-	B	A	A	A	A	A	A	A	A	-	B	A	A	A	A	B	A	-	A	A	A	A	A	-	-	-	A	B	-	B	null	A	null	B	A	A	A	A
RosBREEDSNP_SNP_AC_22068491_Lg5_RosCOS3072_MAF50_472011_exon1	A	B	B	B	A	B	B	B	B	B	B	A	-	-	B	A	-	B	B	B	-	B	A	B	A	B	A	A	A	A	A	B	B	B	A	B	-	-	-	-	A	B	B	B	B	B	B	A	B	-	-	-	-	-	-	-	-	-	A	B	B	B	-	-	-	A	B	B	B	-	-	-	B	-	-	-	-	B	B	A	B	B	A	B	A	A	A	B	-	-	B	-	-
RosBREEDSNP_SNP_AG_22051414_Lg5_RosCOS3072_MAF20_367321_exon6	A	A	A	A	A	A	B	A	A	A	A	A	A	A	A	A	A	B	A	A	A	A	A	A	A	A	A	B	A	A	A	A	A	A	A	A	A	A	-	A	A	A	A	A	A	A	B	A	A	A	-	-	-	-	-	-	A	A	A	A	B	A	A	A	-	-	-	A	A	A	A	A	B	A	A	A	B	A	A	A	B	B	A	A	B	B	A	B	-	-	A	B	A
RosBREEDSNP_SNP_GA_22058324_Lg5_RosCOS3072_MAF40_169821_exon1	B	A	A	A	B	A	A	B	A	B	B	A	B	A	A	A	-	A	B	B	-	A	B	A	A	A	B	A	-	-	B	A	A	A	-	-	B	A	-	B	A	-	A	B	B	A	-	A	B	A	-	B	A	B	A	A	A	B	B	B	A	-	-	-	-	-	-	-	-	B	A	B	A	A	A	-	-	-	A	-	-	A	A	B	A	A	-	A	A	B	B	A	B
RosBREEDSNP_SNP_GA_22076981_Lg5_RosCOS3072_MAF40_1620419_exon2	B	B	A	-	-	A	B	A	A	A	A	B	A	B	B	B	-	A	-	A	-	B	A	-	B	A	B	B	B	B	B	A	-	B	-	-	-	-	-	B	B	B	-	-	A	A	B	A	A	-	-	-	-	-	-	-	-	-	A	B	B	-	-	-	-	B	A	B	A	A	B	B	B	A	B	A	B	A	B	B	B	A	A	A	B	B	B	B	-	-	-	-	-
RosBREEDSNP_SNP_TC_22054127_Lg5_RosCOS3072_MAF10_367321_exon5	A	A	A	A	A	B	A	A	B	B	B	A	A	A	A	A	A	A	A	A	-	B	A	B	-	-	A	A	A	A	A	A	A	A	A	A	A	B	A	A	A	A	-	-	A	A	A	A	B	A	-	A	A	-	-	A	-	-	A	A	B	B	A	B	-	A	B	-	-	A	A	A	A	B	A	B	A	A	A	A	A	B	A	A	A	A	-	A	-	-	A	A	A
RosBREEDSNP_SNP_TC_22063984_Lg5_RosCOS3072_MAF10_1683910_exon3	A	A	A	A	A	A	A	A	A	A	A	A	B	A	A	A	-	A	B	B	A	A	A	A	A	A	A	A	A	A	A	A	A	A	-	-	-	-	A	A	A	A	A	B	B	A	A	A	A	A	-	A	A	-	-	A	A	A	B	A	A	-	A	A	A	A	A	-	-	A	A	A	A	A	A	A	A	B	A	A	A	A	A	A	A	A	-	A	-	-	A	A	A

Alignments

Feature Name	Type	Location	Analysis
Chr17	chromosome	Chr17:26280708..26311914.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation