Mdo-HB-17-23

Haplotype Block Overview
Name Mdo-HB-17-23
Species Malus x domestica
Stock Haplotype [view all 424]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 11
Rome Beauty Law 10 14
Jonafree 10 14
Redfree 11 6
Spartan 11
Wagener 10 3
Worcester Pearmain 10 11
Tsugaru 10 4
Golden Delicious 3 4
Fuji 13 4
Empire 11 4
Gala 11 4
Honeycrisp 4 6
Elstar 11 4
Marshall McIntosh 11 14
Cripps Pink 13 4
Granny Smith 10 13
Jonathan 10 13
Ralls Janet 13 2
Delicious 11 4
Discovery 11 64
Prima 10 4
Fiesta 10 11
Ingrid Marie 10 11
Idared 10
Esopus Spitzenburg 13 3
Braeburn 11
Sansa 10 11
Lodi 10 11
James Grieve 11 3
Cripps Red 13 4
Burgundy 10 11
Akane 10 11
Ambrosia 3 4
Aurora Golden Gala 11
Beacon 4
Ben Davis 10 11 3
Cameo 4
Chinook 11 4
Clivia 10 11
Co-op 17 3 4
Co-op 18 67 68
Dayton 11 14 4
Delblush 10 4
Delorgue 11 6
Dolgo 10
Geheimrat Dr. Oldenburg 10 3
Duchess of Oldenburg 5 6
Early Cortland 10 11 14
Empress 11
F2 26829-2-2 11 14
Fantazja 10 14
Fireside 10 6
Fortune 10 3
Frostbite 6 9
Ginger Gold 10 4
GMAL 4327 14 6
GMAL 4328 10 14
GMAL 4329 10 14
GMAL 4332 14 6
Goodland 10 6
Haralson 10 5
Honeygold 4 5
Hudson 3 4
Jersey Black 14 39
Jonamac 10 11
Keepsake 3 6
Kerr 10 5
Lady Williams 11 13
Liberty 11 14
Linda 10
Liveland Raspberry 10 11
Longfield 80 81
Macoun 11 14
Malinda 4 5
Mantet 4
Melba 10 11
Melrose 10 4
MN 1627 4 6
MN 1628 10 9
MN 1691 10 6
MN 1706 6
MN 1708 4 6
MN 1760 6
MN 1764 10 14
MN 1789 4 6
MN 1802 14 5
MN 1836 3 5
MN 1837 6
MN 1839 4 6
MN 1888 10 4
MN 1899 5 6
MN 1940 11 6
MN 2016 4
AA-44 4 6
Monroe 10 13
Montgomery 10 11
Nicola 11 4
NJ 31 10
NJ 53 14 50
Oriole 11 6
PRI 14-126 14 3
PRI 16-144 14
PRI 1661-2 11
PRI 54-12 14 6
PRI 855-102 14
Primula 10
Raritan 3 75
Regent 11 5
Russian Seedling 14
Sawa 10 14
Sciros 11 4
Sharon 14 6
Silken 11 4
Wildung 14 6
Splendour 11 4
State Fair 4 5
NJ 55 11 3
Co-op 29 11 4
Sunrise 11 4
Sweet Sixteen 3 6
Topaz 11 4
Vista Bella 11 14
Wealthy 10 6
Winesap 10 4
Winter Banana 71 77
Yellow Newtown 78 79
Yellow Transparent 10 19
0407-0001 11 4
0407-0005 11 4
0407-0006 10 11
0407-0007 11 4
0407-0008 10 11
0408-0003 11
0408-0004 11
0408-0005 11
0408-0007 11
0408-0008 11
0408-0010 11
0408-0011 11
0408-0014 11
0408-0015 11
0409-0022 11 6
0409-0024 11 6
0409-0028 11 6
0409-0030 11 4
0409-0032 11 4
0409-0035 11 6
0409-0036 11 6
0409-0038 11 6
0409-0039 11 6
0409-0040 11 6
0409-0043 11 6
0409-0045 11 4
0410-0002 11 13
0410-0003 10 11
0410-0005 10 11
0410-0006 10 11
0410-0010 11 13
0410-0011 11 13
0410-0012 11 13
0410-0013 11 13
0410-0015 11 13
0410-0017 10 11
0410-0018 11 13
0414-0010 10 4
0414-0015 10 4
0414-0017 10 4
0414-0018 11 6
0414-0019 10 4
0414-0020 11 4
0414-0021 10 6
0415-0001 11 6
0415-0004 11 6
0415-0005 11 6
0415-0011 11 4
0415-0012 11 6
0415-0013 11 4
0415-0014 10 4
0415-0016 11 4
0415-0017 11 6
0415-0019 11 6
0415-0020 11 4
0415-0025 11 6
AE_HCxJonf-145 10 4
AE_HCXJonf-148 10 6
AE_HCxJonf-157 14 6
AE_HCXJonf-162 14 4
AE_HCXJonf-168 3 4
AE_HCxJonf-175 14 6
AE_HCxJonf-183 10 6
AE_HCxJonf-185 10 6
AE0118-237 4 5
AE0118-238 11 4
AE0118-239 4
AE0118-240 5 6
AE0118-243 11 6
AE0118-244 11 6
AE0118-245 4 5
AE0118-246 11 6
AE0118-249 4 5
AE0206-159 11 4
AE0206-160 11 4
AE0206-161 4
AE0206-162 4
AE0206-163 4
AE0206-164 4
AE0206-165 4 6
AE0206-167 4 6
AE0206-168 4
AE0206-169 4 6
AE0206-170 11 4
AE0210-146 10 11
AE0210-147 11 14
AE0210-149 11 14
AE0210-150 11 14
AE0210-151 10 4
AE0210-152 4 6
AE0210-153 10 11
AE0210-154 11 14
AE0210-157 14 4
AE0210-158 10 4
AE0210-159 10 11
AE0210-162 10 11
AE0210-163 10 11
AE0210-164 10 11
AE0210-165 10 11
AE0210-166 10 4
AE0210-168 10 11
AE0210-169 10 11
AE0210-170 10 4
AE0210-171 14 4
AE0210-172 11 14
AE0210-173 10 4
AE0210-174 14 4
AE0213-175 4 6
AE0213-176 14 4
AE0213-177 14 4
AE0213-178 14 4
AE0213-179 10 14
AE0213-180 10 14
AE0213-181 14 4
AE0213-182 10 6
AE0213-183 4 6
AE0213-186 14 4
AE0213-187 10 6
AE0213-190 4 6
AE0213-193 10 6
AE0213-194 10 6
AE0213-195 14 4
AE0213-196 10 14
AE0213-197 4 6
AE0213-198 10 14
AE0213-199 4 6
AE0213-200 10 6
AE0213-201 4 6
AE0213-202 10 6
AE0213-205 10 14
AE0213-206 14 4
AE0251-323 11 3
AE0251-325 11 6
AE0251-329 4 6
AE0251-330 4 6
AE0251-331 3 4
AE0251-342 11 6
AE0251-343 3 4
AE0406-239 4 6
AE0406-254 4 6
AE0406-263 4
AE0406-264 4 6
AE0406-266 4
AE0406-274 11 4
AE0406-278 4 6
AE0406-281 4 6
AE0406-286 4 6
AE0406-288 4 6
AE0406-289 11 6
AE0406-294 4 6
AE0406-298 11 4
Minneiska 4 6
NJ 303955 11
PRI 612-1 11 3
Arlet 10 4
Co-op 39 4
Pinova 11 4
Scired 11 4
Scifresh 11 4
0409-0025 11 6
0409-0026 11 4
0409-0027 11 6
0409-0031 11 6
0409-0033 11 4
0409-0047 11 6
G-14-050 13 4
G-14-052 11 13
G-14-054 11 13
G-14-055 11 13
G-14-056 13 4
G-14-057 11 3
G-14-059 11 13
G-14-060 13 4
G-14-061 3 4
G-14-062 13 4
G-14-064 11 3
G-14-065 3 4
G-14-069 11 13
G-14-067 3 4
G-14-068 3 4
G-14-071 11 3
G-14-073 3 4
G-14-074 11 3
G-14-075 3 4
G-14-076 3 4
G-14-077 3 4
G-14-078 11 3
G-14-080 11 3
G-09-232 10 11
G-09-233 11 4
G-09-234 10 11
G-09-235 10 11
G-09-236 10 11
G-09-237 10 11
G-09-238 11 4
G-09-239 11 4
G-09-240 11 4
G-09-241 10 11
G-09-242 11 4
G-09-243 10 11
G-09-245 10 11
G-09-246 10 11
G-09-258 11 4
G-09-259 10 11
G-09-260 11 4
G-09-261 10 11
G-09-262 10 11
G-09-263 10 11
G-09-264 10 11
G-09-265 10 11
G-09-266 10 11
G-09-267 10 11
G-09-268 10 11
0408-0021 11
Wijcik McIntosh 5 76
Beauty of Bath 34 64
Priam 10 3
Northern Spy 10 3
Co-op 15 3 4
MN 1702 10 6
WA 2 4
WA 5 4
Pitmaston Pineapple 33 9
0411-0011 11 4
0411-0017 11 4
0411-0023 11 4
AE0250-086 4 6
AE0250-087 11 6
AE0250-089 4 6
AE0250-090 11 6
AE0250-092 11 6
AE0250-093 11 6
AE0250-094 3 4
AE0250-095 11 3
Sonya 11 4
Co-op 38 3 4
AE0250-096 11 6
AE0250-327 10 11
Co-op 30 11
Jonagrimes 3 6
AE0211-036 14 4
G-07-039 10 11
PRI 47-176 11 13
G-07-041 10 13
BC-8S-27-43 11 4
AE0250-091 4 6
AE0250-097 6
AE0250-325 4 6
AE0250-326 14 4
AE0250-329 14 4
AE0250-333 4 6
AE0250-334 14 6
AE0250-335 4 6
AE0250-336 14 4
AE0250-341 14 4
AE0211-038 10 14
AE0211-043 10 4
AE0211-045 10 4
AE0211-051 10 4
G-07-010 10 11
G-07-014 10 11
G-07-015 10 11
G-07-019 10 13
G-07-020 11 13
G-07-024 11 13
G-07-032 11 13
G-07-033 10 13
G-07-034 10 11
G-07-035 10 13
G-07-044 10 13
AE0211-053 10 4
AE0211-054 4
AE0250-088 6
AE0250-324 6
AE0250-328 4
AE0250-331 4 6
AE0250-332 4
AE0250-337 4
AE0250-339 4 6
Minnewashta 4 6
Autumn Crisp 10 3
G-14-066 11 3
Lu1-11-010 11 4
Lu1-11-013 11 13
Lu1-11-016 13 3
Lu1-11-017 3 4
Lu1-11-018 3 4
NJ 90 11 13
Lord Lambourne 10 11
Antonovka GH 10 6
Grimes Golden 3
Kidds Orange Red 11
Malus baccata Hansen #2 11 14
Malus baccata Jackii 31
Summerred 32 6
William's Pride 6 64
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-17-23Apple-RosBREED-3.9K-20191722.9522.96
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 23456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778798081828384858687
GDsnp01842-BABBBABBB-BBB--BBBBBB----B--BABB-BA--BBBB-BB---B------BA-BBBBBBABBABBBAAABBBBBBB--A--
RosBREEDSNP_SNP_AG_8806260_Lg17_01842_MAF40_MDP0000796893_exon2AAABBBAnullABAAB-BAAABAABAB---BB--B-ABABBBBAB---AAB---BABAAABABAAAAABAA-A-AABBBBABBB--A--
RosBREEDSNP_SNP_CT_8844305_Lg17_01842_MAF20_MDP0000445291_exon1-BBBBBBBBB-BA--BBBBBBB-----ABABBB-AB----BBBBB-BBB------BB-----BBAABABBBBBBAABBBAA--B--
RosBREEDSNP_SNP_GA_8655852_Lg17_00039_MAF30_264652_exon2BBBBBBBBABAAB-BB--AB--BBBA-BBBBAA---BBBBBBBBBAABAABBABAABBABBABAAABB-BAAABBABABBB--B--
RosBREEDSNP_SNP_GA_8801195_Lg17_01842_MAF40_161772_exon2BBBAB--BABBBAABBBABA-------ABABAA-ABABBABBBBBAABAAB--B---ABBBAB-AAABBABBABBAABBAA--BBA
RosBREEDSNP_SNP_GA_8829961_Lg17_01842_MAF20_MDP0000891106_exon1BBBBBBBBBBBBA-BBBBBBBB-----ABABBB-ABABBABBBBBBBBB----B-BBABBBBBBABAABBBBBBAABBABA--B--
RosBREEDSNP_SNP_TC_8820322_Lg17_01842_MAF30_1637607_exon1AAABAAAAABAAAABAAAAB------AAAAABB-AA------AABAABA--BAA---AABAABAAAAA-AAAABAAABBA-BA-AA
Alignments
Feature NameTypeLocationAnalysis
Chr17 chromosome Chr17:8723570..9034442. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation