Mdo-HB-17-22

Haplotype Block Overview
Name Mdo-HB-17-22
Species Malus x domestica
Stock Haplotype [view all 419]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 5 9
Rome Beauty Law 12 5
Jonafree 12 5
Redfree 12 5
Spartan 5
Wagener 5
Worcester Pearmain 9
Tsugaru 5 9
Golden Delicious 4 5
Fuji 11 5
Empire 5
Gala 5 9
Honeycrisp 5 6
Elstar 5 9
Marshall McIntosh 4 5
Cripps Pink 5
Granny Smith 5
Jonathan 11 9
Ralls Janet 11 2
Delicious 5
Discovery 4 9
Prima 5 9
821 9
Fiesta 5 9
Ingrid Marie 5 9
Idared 5 9
Esopus Spitzenburg 11 5
Braeburn 5 9
Sansa 9
Lodi 5 9
James Grieve 5
Cripps Red 5
Burgundy 5
Akane 9
Ambrosia 4 5
Aurora Golden Gala 5 9
Beacon 12
Ben Davis 4 5 9
Cameo 5
Chinook 5
Clivia 9
Co-op 17 5
Co-op 18 12 5
Dayton 12 4 5
Delblush 5 9
Delorgue 6 9
Dolgo 9
Geheimrat Dr. Oldenburg 5 9
Duchess of Oldenburg 4 6
Early Cortland 4 5 9
Empress 5
F2 26829-2-2 12 5
Fantazja 4 9
Fireside 6 9
Fortune 4 5
Frostbite 5 6
Ginger Gold 5 9
GMAL 4327 12 6
GMAL 4328 12 9
GMAL 4329 12 9
GMAL 4332 12 6
Goodland 6 9
Haralson 9
Honeygold 5 9
Hudson 5
Jersey Black 12
Jonamac 5 9
Keepsake 5 6
Kerr 9
Lady Williams 5
Liberty 12 5
Linda 9
Longfield 12 5
Macoun 12 5
Malinda 12 9
Melba 5
Melrose 5 9
MN 1627 5 6
MN 1628 5
MN 1691 6 9
MN 1706 24 6
MN 1708 5
MN 1760 30
MN 1764 4 9
MN 1789 5 6
MN 1802 4 9
MN 1836 5 9
MN 1837 6
MN 1839 6
MN 1888 5 9
MN 1899 6 9
MN 1940 5 6
MN 2016 5
AA-44 5 6
Monroe 11 5
Montgomery 5 9
Nicola 5 9
NJ 31 5
NJ 53 4 9
Oriole 5 6
PRI 14-126 12 4
PRI 16-144 12
PRI 1661-2 5
PRI 855-102 12
Primula 5 9
Raritan 5
Regent 5 9
Russian Seedling 12
Sciros 5
Sharon 4 5
Silken 5
Wildung 4 6
Splendour 5
State Fair 5 9
NJ 55 4 9
Co-op 29 5
Sunrise 5
Sweet Sixteen 5 6
Topaz 5
Vista Bella 4 5
Wealthy 6 9
Winesap 5 9
Winter Banana 38 5
Yellow Newtown 5
Yellow Transparent 9
0407-0001 5
0407-0005 5
0407-0006 5
0407-0007 5
0407-0008 5
0408-0003 5 9
0408-0004 5 9
0408-0005 5 9
0408-0007 5 9
0408-0008 5
0408-0010 5
0408-0011 5
0408-0014 5 9
0408-0015 5 9
0409-0022 5 6
0409-0024 6 9
0409-0028 5 6
0409-0030 5
0409-0032 5 9
0409-0035 6 9
0409-0036 6 9
0409-0038 5 6
0409-0039 5 6
0409-0040 6 9
0409-0043 6 9
0409-0045 5
0410-0002 5 9
0410-0003 5
0410-0005 5 9
0410-0006 5
0410-0010 5 9
0410-0011 5 9
0410-0012 5 9
0410-0013 5
0410-0015 5 9
0410-0017 5
0410-0018 5
0414-0010 5
0414-0015 5
0414-0017 5
0414-0018 5 6
0414-0019 5
0414-0020 5
0414-0021 5 6
0415-0001 5 6
0415-0004 5 6
0415-0005 5 6
0415-0011 5
0415-0012 5 6
0415-0013 5
0415-0014 5
0415-0016 5
0415-0017 5 6
0415-0019 5 6
0415-0020 5
0415-0025 5 6
AE_HCxJonf-145 5
AE_HCXJonf-148 5 6
AE_HCxJonf-157 12 6
AE_HCXJonf-162 12 5
AE_HCXJonf-168 4 5
AE_HCxJonf-175 12 6
AE_HCxJonf-183 5 6
AE_HCxJonf-185 5 6
AE0118-237 5 9
AE0118-238 5
AE0118-239 5
AE0118-240 6 9
AE0118-243 5 6
AE0118-244 5 6
AE0118-245 5 9
AE0118-246 5 6
AE0118-249 5 9
AE0206-159 5 9
AE0206-160 5 9
AE0206-161 5
AE0206-162 5
AE0206-163 5
AE0206-164 5
AE0206-165 5 6
AE0206-167 5 6
AE0206-168 5
AE0206-169 5 6
AE0206-170 5 9
AE0210-146 5 9
AE0210-147 12 5
AE0210-149 12 5
AE0210-150 12 5
AE0210-151 5 9
AE0210-152 5 6
AE0210-153 5 9
AE0210-154 12 5
AE0210-157 12 5
AE0210-158 5 9
AE0210-159 5 9
AE0210-162 5 9
AE0210-163 5 9
AE0210-164 5 9
AE0210-165 5 9
AE0210-166 5 9
AE0210-168 5 9
AE0210-169 5 9
AE0210-170 5 9
AE0210-171 12 5
AE0210-172 12 5
AE0210-173 5 9
AE0210-174 12 5
AE0213-175 5 6
AE0213-176 12 5
AE0213-177 12 5
AE0213-178 12 5
AE0213-180 12 9
AE0213-181 12 5
AE0213-182 12 9
AE0213-183 5 6
AE0213-186 12 5
AE0213-187 6 9
AE0213-193 6 9
AE0213-194 6 9
AE0213-195 12 5
AE0213-196 12 9
AE0213-197 5 6
AE0213-198 12 9
AE0213-199 5 6
AE0213-200 6 9
AE0213-201 5 6
AE0213-202 6 9
AE0213-206 12 5
AE0251-323 5 9
AE0251-325 6 9
AE0251-327 6 9
AE0251-329 5 6
AE0251-330 5 6
AE0251-331 5
AE0251-342 6 9
AE0251-343 5
AE0406-239 5 6
AE0406-254 5 6
AE0406-258 5
AE0406-259 5
AE0406-263 5
AE0406-264 5 6
AE0406-266 5
AE0406-271 5
AE0406-274 5
AE0406-278 5 6
AE0406-281 5 6
AE0406-286 5 6
AE0406-288 5 6
AE0406-289 5 6
AE0406-294 5 6
AE0406-298 5
Minneiska 5 6
NJ 303955 9
PRI 612-1 4 5
Arlet 5
Co-op 39 5
Pinova 5 9
Scired 5
Scifresh 5 9
0409-0025 6 9
0409-0026 5
0409-0027 5 6
0409-0031 5 6
0409-0033 5
0409-0047 5 6
G-14-050 11 5
G-14-052 11 9
G-14-054 11 9
G-14-055 11 9
G-14-056 11 5
G-14-057 4 9
G-14-059 11 9
G-14-060 11 5
G-14-061 4 5
G-14-062 11 5
G-14-064 4 9
G-14-065 4 5
G-14-069 11 9
G-14-067 4 5
G-14-068 4 5
G-14-071 4 9
G-14-073 4 5
G-14-074 4 9
G-14-075 4 5
G-14-076 4 5
G-14-077 4 5
G-14-078 4 9
G-14-080 4 9
G-09-232 9
G-09-233 5 9
G-09-234 9
G-09-235 9
G-09-236 5 9
G-09-237 9
G-09-238 5 9
G-09-239 5
G-09-240 5
G-09-241 9
G-09-242 5 9
G-09-243 9
G-09-245 9
G-09-246 9
G-09-258 5 9
G-09-259 9
G-09-260 5 9
G-09-261 5 9
G-09-262 5 9
G-09-263 5 9
G-09-264 9
G-09-265 9
G-09-266 9
G-09-267 5 9
G-09-268 5 9
0408-0021 5 9
Wijcik McIntosh 4 5
Beauty of Bath 36 4
Priam 4 9
Northern Spy 5
Co-op 15 4 5
MN 1702 6 9
WA 2 5 9
WA 5 5
Pitmaston Pineapple 11 5
0411-0011 5
0411-0017 5
0411-0023 5
AE0250-086 5 6
AE0250-087 6 9
AE0250-089 5 6
AE0250-090 6 9
AE0250-092 5 6
AE0250-093 6 9
AE0250-094 5 9
AE0250-095 6 9
Sonya 5
Co-op 38 4 5
AE0250-096 5 6
AE0250-327 5 9
Co-op 30 5
AE0211-036 12 5
G-07-039 5 9
G-07-041 11 9
BC-8S-27-43 5 9
AE0250-091 5 6
AE0250-097 6
AE0250-325 5 6
AE0250-326 12 5
AE0250-329 12 5
AE0250-333 5 6
AE0250-334 12 6
AE0250-335 5 6
AE0250-336 12 5
AE0250-341 12 5
AE0211-038 12 9
AE0211-043 5 9
AE0211-045 5 9
AE0211-051 5 9
G-07-010 5 9
G-07-014 5 9
G-07-015 5 9
G-07-019 5 9
G-07-020 5 9
G-07-024 5 9
G-07-032 5 9
G-07-033 5 9
G-07-034 5 9
G-07-035 5 9
G-07-044 5 9
AE0211-053 5 9
AE0211-054 5
AE0250-088 6
AE0250-328 5
AE0250-331 5 6
AE0250-332 5
AE0250-337 5
AE0250-339 5 6
Minnewashta 5 6
Autumn Crisp 4 5
G-14-066 4 9
Lu1-11-010 5
Lu1-11-013 11 5
Lu1-11-016 11 4
Lu1-11-017 4 5
Lu1-11-018 4 5
NJ 90 11 5
Lord Lambourne 5 9
Antonovka GH 6 9
Grimes Golden 2 4
Kidds Orange Red 5 9
Malus baccata Hansen #2 5 9
Malus baccata Jackii 9
Summerred 23
William's Pride 5
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-17-22Apple-RosBREED-3.9K-20191721.7822.55
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 234567891011121314151617181920212223242526272829303132333435363738
RosBREEDSNP_SNP_GA_8234228_Lg17_RosCOS653_MAF10_1688197_exon3BAABA--BBBBBBABBB---BABABA-A-B-B-B-AA
RosBREEDSNP_SNP_GA_8242256_Lg17_RosCOS653_MAF30_1682210_exon2--BBBBBA-ABBAB---BBABBB---BBBAAAABA-A
RosBREEDSNP_SNP_GA_8254567_Lg17_RosCOS653_MAF10_453579_exon1--BBBBBB-BA---BBB---BBB-ABAABBB-BABBB
RosBREEDSNP_SNP_GA_8261983_Lg17_RosCOS653_MAF20_MDP0000935652_exon3BBBBAABBAABBBB-ABB----AABABB--BA-AABA
Alignments
Feature NameTypeLocationAnalysis
Chr17 chromosome Chr17:8374775..8402517. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation