Mdo-HB-17-19

Haplotype Block Overview
Name Mdo-HB-17-19
Species Malus x domestica
Stock Haplotype [view all 428]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 13 3
Rome Beauty Law 5 9
Jonafree 5 9
Redfree 3 5
Spartan 3 9
Wagener 11 4
Worcester Pearmain 3
Tsugaru 3 4
Golden Delicious 3 4
Fuji 11 4
Empire 4
Gala 3 4
Honeycrisp 4 6
Elstar 3 4
Marshall McIntosh 3 4
Cripps Pink 4 5
Granny Smith 4 5
Jonathan 3
Ralls Janet 10 11
Delicious 4 9
Discovery 3
Prima 3 4
821 12
Fiesta 13 4
Ingrid Marie 13 3
Idared 3 4
Esopus Spitzenburg 11 3
Braeburn 3 9
Sansa 3
Lodi 13 6
James Grieve 13 9
Cripps Red 4 5
Burgundy 3 5
Akane 3
Ambrosia 4
Aurora Golden Gala 3 4
Beacon 3
Ben Davis 3 4 9
Cameo 3 4
Chinook 4 9
Clivia 3
Co-op 17 4 9
Co-op 18 32 33
Dayton 3 4 9
Delblush 4
Delorgue 3 6
Dolgo 3
Geheimrat Dr. Oldenburg 3 9
Duchess of Oldenburg 5 6
Early Cortland 4 6 9
Empress 3
F2 26829-2-2 5 9
Fantazja 3 4
Fireside 4 6
Fortune 3 4
Frostbite 5 6
Ginger Gold 4 6
GMAL 4327 21 3
GMAL 4328 3
GMAL 4329 21 4
GMAL 4332 17 3
Goodland 3 6
Haralson 3 9
Honeygold 4 9
Hudson 4 9
Jersey Black 13 3
Jonamac 3
Keepsake 4 6
Kerr 3 9
Lady Williams 5 9
Liberty 3 9
Linda 3 4
Liveland Raspberry 3 4
Longfield 3 9
Macoun 3
Malinda 3 9
Melba 3
Melrose 3 4
MN 1627 4 6
MN 1628 4 5
MN 1691 4 6
MN 1706 13 29
MN 1708 4 6
MN 1760 5 6
MN 1764 3 4
MN 1789 4 6
MN 1802 4 9
MN 1836 3 4
MN 1837 6
MN 1839 4 6
MN 1888 4
MN 1899 6 9
MN 1940 3 6
MN 2016 4
AA-44 6 9
Monroe 3 5
Montgomery 13 9
Nicola 3 4
NJ 31 5
NJ 53 3 4
Oriole 4 6
PRI 14-126 3 9
PRI 14-510 4 9
PRI 16-144 9
PRI 1661-2 3 9
PRI 54-12 6 9
PRI 855-102 9
Primula 3
Raritan 3 4
Regent 3 9
Russian Seedling 3 4
Sawa 3 4
Sciros 4 9
Sharon 11 4
Silken 3 4
Wildung 4 6
Splendour 4 9
State Fair 3 4
NJ 55 3
Co-op 29 4 5
Sunrise 3 4
Sweet Sixteen 6 9
Topaz 4 9
Vista Bella 3 4
Wealthy 3 6
Winesap 4
Winter Banana 17 18
Yellow Newtown 4 9
Yellow Transparent 3 6
0407-0001 4
0407-0005 4
0407-0006 4
0407-0007 4
0407-0008 3 4
0408-0003 3
0408-0004 3
0408-0005 3
0408-0007 3
0408-0008 3 4
0408-0010 3 4
0408-0011 3 4
0408-0014 3
0408-0015 3
0409-0022 4
0409-0024 3 6
0409-0028 4 6
0409-0030 4
0409-0032 3 4
0409-0035 3 6
0409-0036 3 4
0409-0038 4 6
0409-0039 4 6
0409-0040 3 6
0409-0043 3 6
0409-0045 4
0410-0002 3 5
0410-0003 4
0410-0005 3 4
0410-0006 4
0410-0010 3 5
0410-0011 3 5
0410-0012 3 5
0410-0013 4 5
0410-0015 3 5
0410-0017 4
0410-0018 4 5
0414-0010 4
0414-0015 4
0414-0017 4
0414-0018 3 6
0414-0019 4
0414-0020 3 4
0414-0021 4 6
0415-0001 3 6
0415-0004 3 6
0415-0005 3 6
0415-0011 3 4
0415-0012 3 6
0415-0013 3 4
0415-0014 4
0415-0016 3 4
0415-0017 3 6
0415-0019 3 6
0415-0020 3 4
0415-0025 3 6
AE_HCxJonf-145 4 5
AE_HCXJonf-148 5 6
AE_HCxJonf-157 6 9
AE_HCXJonf-162 4 9
AE_HCXJonf-168 3 4
AE_HCxJonf-175 6 9
AE_HCxJonf-183 5 6
AE_HCxJonf-185 4 5
AE0118-237 4 9
AE0118-238 4 9
AE0118-239 4
AE0118-240 4 9
AE0118-243 6 9
AE0118-244 3 6
AE0118-245 4 9
AE0118-246 3 6
AE0118-249 4 9
AE0206-159 4
AE0206-160 4
AE0206-161 4
AE0206-162 4
AE0206-163 4
AE0206-164 4
AE0206-165 4 6
AE0206-167 4 6
AE0206-168 4
AE0206-169 4 6
AE0206-170 4
AE0210-146 3 4
AE0210-147 21 3
AE0210-149 21 3
AE0210-150 21 3
AE0210-151 4
AE0210-152 4 6
AE0210-153 3 4
AE0210-154 21 3
AE0210-157 21 4
AE0210-158 4
AE0210-159 3 4
AE0210-162 3 4
AE0210-163 3 4
AE0210-164 3 4
AE0210-165 3 4
AE0210-166 4
AE0210-168 3 4
AE0210-169 3 4
AE0210-170 4
AE0210-171 21 4
AE0210-172 21 3
AE0210-173 4
AE0210-174 21 4
AE0213-175 3 4
AE0213-176 17 4
AE0213-177 17 4
AE0213-178 17 4
AE0213-179 17 6
AE0213-180 17 6
AE0213-181 17 4
AE0213-182 17 6
AE0213-183 3 6
AE0213-186 17 4
AE0213-187 3 6
AE0213-190 3 4
AE0213-193 3 6
AE0213-194 3 6
AE0213-195 17 4
AE0213-196 17 6
AE0213-197 3 4
AE0213-198 3 6
AE0213-199 3 4
AE0213-200 3 6
AE0213-202 3 6
AE0213-205 17 6
AE0213-206 17 4
AE0251-323 4 9
AE0251-325 4 6
AE0251-327 4 6
AE0251-329 4 6
AE0251-330 4 6
AE0251-331 4 9
AE0251-342 4 6
AE0251-343 4 9
AE0406-239 4 6
AE0406-254 4 6
AE0406-258 3 4
AE0406-259 3 4
AE0406-263 3 4
AE0406-264 4 6
AE0406-266 4
AE0406-271 4
AE0406-274 3 4
AE0406-278 4 6
AE0406-281 4 6
AE0406-286 4 6
AE0406-288 4 6
AE0406-289 3 6
AE0406-294 4 6
AE0406-298 3 4
Minneiska 4 6
NJ 303955 3
PRI 612-1 9
Arlet 4
Co-op 39 4
Pinova 3 4
Scired 3 9
0409-0025 3 6
0409-0026 4
0409-0027 4 6
0409-0031 4 6
0409-0033 4
0409-0047 4 6
G-14-050 11 4
G-14-052 11 3
G-14-054 11 3
G-14-055 11 3
G-14-056 11 4
G-14-057 3
G-14-059 11 3
G-14-060 11 4
G-14-061 3 4
G-14-062 11 4
G-14-064 3
G-14-065 3 4
G-14-069 11 3
G-14-067 3 4
G-14-068 3 4
G-14-071 3
G-14-073 3
G-14-074 3
G-14-075 3 4
G-14-076 3 4
G-14-077 3 4
G-14-078 3
G-14-080 3
G-09-232 3 6
G-09-233 3 4
G-09-234 3 4
G-09-235 3 6
G-09-236 4 9
G-09-237 3 6
G-09-238 3 4
G-09-239 4 9
G-09-240 6 9
G-09-241 3 6
G-09-242 3 4
G-09-243 3 6
G-09-245 3 6
G-09-246 3 6
G-09-258 3 4
G-09-259 3 6
G-09-260 3 4
G-09-261 6 9
G-09-262 6 9
G-09-263 6 9
G-09-264 3 6
G-09-265 3 6
G-09-266 3 6
G-09-267 6 9
G-09-268 6 9
0408-0021 3
Wijcik McIntosh 3 4
Beauty of Bath 3 4
Priam 3
Northern Spy 4 9
Co-op 15 4 9
MN 1702 4 6
WA 2 3 4
WA 5 4
Pitmaston Pineapple 11 4
0411-0011 3 4
0411-0017 3 4
0411-0023 3 4
AE0250-086 4 6
AE0250-087 4 6
AE0250-089 4 6
AE0250-090 4 6
AE0250-092 4 6
AE0250-093 4 6
AE0250-094 4 6
AE0250-095 4 6
Sonya 3 9
Co-op 38 3 9
AE0250-096 3 6
AE0250-327 3 6
Co-op 30 3
Jonagrimes 3 6
AE0211-036 3 4
G-07-039 3 4
PRI 14-152 4 9
PRI 47-176 3 5
G-07-041 11 3
BC-8S-27-43 4
AE0250-091 3 4
AE0250-097 3 6
AE0250-325 3 4
AE0250-326 21 4
AE0250-329 21 4
AE0250-333 3 4
AE0250-334 21 6
AE0250-335 3 6
AE0250-336 21 4
AE0250-338 3 6
AE0250-341 21 4
AE0211-038 3 6
AE0211-043 3 4
AE0211-045 3 4
AE0211-051 3 4
G-07-010 3 4
G-07-014 3 4
G-07-015 3 4
G-07-019 3 5
G-07-020 3 5
G-07-024 3 4
G-07-032 3 5
G-07-033 3 5
G-07-034 3 4
G-07-035 3 5
G-07-044 3 5
AE0211-053 4 6
AE0211-054 4
AE0250-088 6
AE0250-324 4 6
AE0250-328 4
AE0250-331 4 6
AE0250-332 4
AE0250-337 4
AE0250-339 4 6
Minnewashta 4 6
Autumn Crisp 3
G-14-066 3
Lu1-11-010 3 4
Lu1-11-013 11 3
Lu1-11-016 11 3
Lu1-11-017 3 4
Lu1-11-018 3 4
NJ 90 3
Lord Lambourne 3 9
Antonovka GH 13 4
Grimes Golden 3
Kidds Orange Red 3 9
Malus baccata Hansen #2 34 4
Malus baccata Jackii 30
Summerred 4 6
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-17-19Apple-RosBREED-3.9K-20191716.6816.83
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 2345678910111213141516171819202122232425262728293031323334353637
GDsnp01542AABAB--BBABABAAABA-BBA--BBABBABABABB
RosBREEDSNP_SNP_AG_6595951_Lg17_01542_MAF40_968869_exon1AAABBBAAAAAB---ABB-AAA--B--BAAABAA--
RosBREEDSNP_SNP_CA_6590432_Lg17_01542_MAF20_1673577_exon1-BBBBBBA-ABBBBBBBA-BBBBA---BBAABABBB
RosBREEDSNP_SNP_GA_6635552_Lg17_01542_MAF20_468933_exon1BBBABBBBBBABBABBBBBBBB--B--AAAABAABB
RosBREEDSNP_SNP_TC_6617432_Lg17_01542_MAF30_389937_exon1AAABBBAAAABBABABAB-B----B--BAABAAAB-
Alignments
Feature NameTypeLocationAnalysis
Chr17 chromosome Chr17:6760622..6804580. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation