Mdo-HB-17-18

Haplotype Block Overview
Name Mdo-HB-17-18
Species Malus x domestica
Stock Haplotype [view all 427]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 18 8
Rome Beauty Law 10 7
Jonafree 10 7
Redfree 48 53
Spartan 4 5
Wagener 8
Worcester Pearmain 5 7
Tsugaru 5
Golden Delicious 4 5
Fuji 4
Empire 4
Gala 5 8
Honeycrisp 5 6
Elstar 5
Marshall McIntosh 4 5
Cripps Pink 5 7
Granny Smith 7 8
Jonathan 5 7
Ralls Janet 2 4
Delicious 4
Discovery 11 5
Prima 5
Fiesta 18 8
Ingrid Marie 18 5
Idared 5 8
Esopus Spitzenburg 4 7
Braeburn 4 8
Sansa 7 8
Lodi 18 5
James Grieve 18 7
Cripps Red 5 7
Burgundy 5 7
Akane 5 7
Ambrosia 4 5
Aurora Golden Gala 5 8
Beacon 18
Ben Davis 5 7 8
Cameo 4
Chinook 4 5
Clivia 5 8
Co-op 17 5
Co-op 18 47 48
Dayton 10 4 5
Delblush 5 7
Delorgue 6 7
Dolgo 5
Geheimrat Dr. Oldenburg 5 7
Duchess of Oldenburg 5 6
Early Cortland 4 5
Empress 5
F2 26829-2-2 10 7
Fantazja 4 5
Fireside 6 7
Fortune 7 8
Frostbite 6 7
Ginger Gold 5
GMAL 4327 11
GMAL 4328 11 5
GMAL 4329 11 5
GMAL 4332 11
Goodland 5 6
Haralson 5 7
Honeygold 5 7
Hudson 4 9
Jersey Black 11 31
Jonamac 5
Keepsake 6 8
Kerr 5 7
Lady Williams 5 7
Liberty 10 5
Linda 5
Longfield 18 38
Macoun 11 5
Malinda 18 7
Mantet 5
Melba 5
Melrose 4 5
MN 1627 5 6
MN 1628 7 8
MN 1691 6 7
MN 1706 6 7
MN 1708 5 6
MN 1760 38 39
MN 1764 4 5
MN 1789 5 6
MN 1802 5 7
MN 1836 5 8
MN 1837 6
MN 1839 5 6
MN 1888 5 7
MN 1899 6 7
MN 1940 5 6
MN 2016 5
AA-44 6 7
Monroe 7
Montgomery 18 5
Nicola 4 8
NJ 31 7
NJ 53 4 5
Oriole 5 6
PRI 14-126 10 4
PRI 16-144 10
PRI 1661-2 4 5
PRI 54-12 10 6
PRI 855-102 10
Primula 5
Raritan 4 5
Regent 5 7
Russian Seedling 11
Sawa 4 5
Sciros 4 5
Sharon 4
Silken 5
Wildung 4 6
Splendour 4 5
State Fair 5
NJ 55 4 8
Co-op 29 5 7
Sunrise 5
Sweet Sixteen 6 9
Topaz 5 7
Vista Bella 4 5
Wealthy 5 6
Winesap 4 7
Winter Banana 38 54
Yellow Newtown 55 9
Yellow Transparent 5
0407-0001 5
0407-0005 5
0407-0006 5 8
0407-0007 5
0407-0008 8
0408-0003 5 8
0408-0004 5 8
0408-0005 5 8
0408-0007 5 8
0408-0008 5
0408-0010 5
0408-0011 5
0408-0014 5 8
0408-0015 5 8
0409-0022 5
0409-0024 6 8
0409-0028 5 6
0409-0030 5
0409-0032 5 8
0409-0035 6 8
0409-0036 5 8
0409-0038 5 6
0409-0039 5 6
0409-0040 6 8
0409-0043 6 8
0409-0045 5
0410-0002 7 8
0410-0003 5 8
0410-0005 8
0410-0006 5 8
0410-0010 7 8
0410-0011 7 8
0410-0012 7 8
0410-0013 5 7
0410-0015 7 8
0410-0017 5 8
0410-0018 5 7
0414-0010 5 8
0414-0015 5 8
0414-0017 5 8
0414-0018 5 6
0414-0019 5 8
0414-0020 5
0414-0021 6 8
0415-0001 5 6
0415-0004 5 6
0415-0005 5 6
0415-0011 5
0415-0012 5 6
0415-0013 5
0415-0014 5 8
0415-0016 5
0415-0017 5 6
0415-0019 5 6
0415-0020 5
0415-0025 5 6
AE_HCxJonf-145 5 7
AE_HCXJonf-148 6 7
AE_HCxJonf-157 10 6
AE_HCXJonf-162 10 5
AE_HCXJonf-168 4 5
AE_HCxJonf-175 10 6
AE_HCxJonf-183 6 7
AE_HCxJonf-185 5 7
AE0118-237 5 7
AE0118-238 5 7
AE0118-239 5
AE0118-240 5 7
AE0118-243 6 7
AE0118-244 5 6
AE0118-245 5 7
AE0118-246 5 6
AE0118-249 5 7
AE0206-159 5
AE0206-160 5
AE0206-161 5
AE0206-162 5
AE0206-163 5
AE0206-164 5
AE0206-165 5 6
AE0206-167 5 6
AE0206-168 5 6
AE0206-169 5 6
AE0206-170 5
AE0210-146 5
AE0210-147 11 5
AE0210-149 11 5
AE0210-150 11 5
AE0210-151 5
AE0210-152 5 6
AE0210-153 5
AE0210-154 11 5
AE0210-157 11 5
AE0210-158 5
AE0210-159 5
AE0210-162 5
AE0210-163 5
AE0210-164 5
AE0210-165 5
AE0210-166 5
AE0210-168 5
AE0210-169 5
AE0210-170 5
AE0210-171 11 5
AE0210-172 11 5
AE0210-173 5
AE0210-174 11 5
AE0213-175 11 5
AE0213-176 11 5
AE0213-177 11 5
AE0213-178 11 5
AE0213-179 11 5
AE0213-180 11 5
AE0213-181 11 5
AE0213-182 11 5
AE0213-183 11 5
AE0213-186 11 5
AE0213-187 11 5
AE0213-190 11 5
AE0213-193 11 5
AE0213-194 11 5
AE0213-195 11 5
AE0213-196 11 5
AE0213-197 11 5
AE0213-198 11 5
AE0213-199 11 5
AE0213-200 11 5
AE0213-201 11 5
AE0213-202 11 5
AE0213-205 11 5
AE0213-206 11 5
AE0251-323 5 9
AE0251-325 5 6
AE0251-327 5 6
AE0251-329 5 6
AE0251-330 5 6
AE0251-331 5 9
AE0251-342 5 6
AE0251-343 5 9
AE0406-239 5 6
AE0406-254 5 6
AE0406-258 5
AE0406-259 5
AE0406-263 5
AE0406-264 5 6
AE0406-266 5
AE0406-271 5
AE0406-274 5
AE0406-278 5 6
AE0406-281 5 6
AE0406-286 5 6
AE0406-288 5 6
AE0406-289 5 6
AE0406-294 5
AE0406-298 5
Minneiska 5 6
NJ 303955 8
PRI 612-1 10 4
Arlet 5 8
Co-op 39 5
Pinova 5 8
Scired 4 8
Scifresh 4 5
0409-0025 6 8
0409-0026 5
0409-0027 5 6
0409-0031 5 6
0409-0033 5
0409-0047 5 6
G-14-050 4 5
G-14-052 4 8
G-14-054 4 8
G-14-055 4 8
G-14-056 4 5
G-14-057 4 8
G-14-059 4 8
G-14-060 4 5
G-14-061 4 5
G-14-062 4 5
G-14-065 4 5
G-14-069 4 8
G-14-067 4 5
G-14-068 4 5
G-14-071 4 8
G-14-073 4 8
G-14-074 4 8
G-14-075 4 5
G-14-076 4 5
G-14-077 4 5
G-14-078 4 8
G-14-080 4 8
G-09-232 5 8
G-09-233 5 8
G-09-234 5 8
G-09-235 5 8
G-09-236 4 5
G-09-237 5 8
G-09-238 5 8
G-09-239 4 5
G-09-240 4 5
G-09-241 5 8
G-09-242 5 8
G-09-243 5 8
G-09-245 5 8
G-09-246 5 8
G-09-258 5 8
G-09-259 5 8
G-09-260 5 8
G-09-261 4 5
G-09-262 5 8
G-09-263 4 5
G-09-264 5 8
G-09-265 5 8
G-09-266 5 8
G-09-267 5 8
G-09-268 4 5
0408-0021 5 8
Wijcik McIntosh 4 5
Beauty of Bath 11 45
Priam 4 5
Northern Spy 8 9
Co-op 15 10 4
MN 1702 6 7
WA 2 5 8
WA 5 4 5
Pitmaston Pineapple 4 7
0411-0011 5
0411-0017 5
0411-0023 5
AE0250-086 5 6
AE0250-087 5 6
AE0250-089 5 6
AE0250-090 5 6
AE0250-092 5 6
AE0250-093 5 6
AE0250-094 5 6
AE0250-095 5 6
Sonya 4 8
Co-op 38 4 5
AE0250-096 5 6
AE0250-327 5 6
Co-op 30 5
Jonagrimes 4 6
AE0211-036 11 5
G-07-039 4 7
PRI 47-176 7
G-07-041 4 7
BC-8S-27-43 5
AE0250-091 11 5
AE0250-097 11 6
AE0250-325 11 5
AE0250-326 11 5
AE0250-329 11 5
AE0250-333 11 5
AE0250-334 11 6
AE0250-335 11 6
AE0250-336 11 5
AE0250-338 11 6
AE0250-341 11 5
AE0211-038 11 5
AE0211-043 5
AE0211-045 5
AE0211-051 5
G-07-010 8
G-07-014 8
G-07-015 8
G-07-019 7
G-07-020 7 8
G-07-024 8
G-07-032 7 8
G-07-033 7
G-07-034 8
G-07-035 7
G-07-044 7
AE0211-053 5
AE0211-054 5
AE0250-088 6
AE0250-324 5 6
AE0250-328 5
AE0250-331 5 6
AE0250-332 5
AE0250-337 5
AE0250-339 5 6
Minnewashta 5 6
Autumn Crisp 4 7
G-14-066 4 5
Lu1-11-010 4 5
Lu1-11-013 4 5
Lu1-11-016 4
Lu1-11-017 4
Lu1-11-018 4
NJ 90 5 7
Lord Lambourne 5 7
Antonovka GH 38 39
Grimes Golden 2 4
Kidds Orange Red 4 8
Malus baccata Hansen #2 11 5
Malus baccata Jackii 11
Summerred 56 6
William's Pride 5 7
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-17-18Apple-RosBREED-3.9K-20191715.9416.5
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859
GDsnp00515--ABBBBBAB-BA--AB-BBBB---ABA--ABA-BABB--ABAABABABBABBABBB-
RosBREEDSNP_SNP_AG_5943747_Lg17_00515_MAF40_1664712_exon1BAAABBBBAA---BABABBBBA---ABAAA---B--ABA-B--BABAABBBBBAAB--
RosBREEDSNP_SNP_AG_5951435_Lg17_00515_MAF20_MDP0000945267_exon1--AAAABBAAA--AAAA-AABAAABAAA------AAAAAABAA--AAA--BAAA--AB
RosBREEDSNP_SNP_CT_5879958_Lg17_251346_MAF50_251346_exon1ABBBAAAAAAA--ABABAA--BB-A--AAB---A--ABA-AAAAAAAAAAAABBBAB-
RosBREEDSNP_SNP_GT_5988456_Lg17_00515_MAF20_MDP0000134434_exon3ABBBBABBBB---ABBBB-ABB---BBBBBB--B--BBB-ABBABBAA-BBBBBBBB-
RosBREEDSNP_SNP_TC_5995947_Lg17_00515_MAF30_1641196_exon1AAAAAABABB---AAABBAAB----BA-BB-ABAAAAABAAABABBAAABBBBBAAAB
Alignments
Feature NameTypeLocationAnalysis
Chr17 chromosome Chr17:5919336..8916216. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation