Mdo-HB-17-13

Haplotype Block Overview
Name Mdo-HB-17-13
Species Malus x domestica
Stock Haplotype [view all 428]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 26 5
Rome Beauty Law 24 7
Jonafree 7
Redfree 15 71
Spartan 5
Wagener 6 8
Worcester Pearmain 6 8
Tsugaru 24 5
Golden Delicious 4 5
Fuji 11 7
Empire 12 7
Gala 5
Honeycrisp 5 6
Elstar 5 6
Marshall McIntosh 12 5
Cripps Pink 5
Granny Smith 6 8
Jonathan 23 24
Ralls Janet 11 2
Delicious 5 7
Discovery 23 6
Prima 5 6
Fiesta 26 8
Ingrid Marie 26 6
Idared 23 8
Esopus Spitzenburg 23 4
Braeburn 5
Sansa 5 8
Lodi 26 6
James Grieve 26 53
Cripps Red 5 6
Burgundy 24 5
Akane 24 8
Ambrosia 5 7
Aurora Golden Gala 5
Beacon 5
Ben Davis 5 6 7 8
Cameo 4 7
Chinook 5
Clivia 5 75
Co-op 17 11 5
Co-op 18 7
Dayton 12 24 5
Delblush 5 7
Delcorf 6
Delorgue 24 6
Dolgo 29
Geheimrat Dr. Oldenburg 39 75
Duchess of Oldenburg 6
Early Cortland 12 6
Empress 5
F2 26829-2-2 7 8
Fantazja 12 24
Fireside 6 7
Fortune 24 4
Frostbite 6 7
Ginger Gold 5 6
GMAL 4327 24
GMAL 4328 15 39
GMAL 4329 24 6
GMAL 4332 24
Goodland 29 6
Haralson 5 6
Honeygold 5
Hudson 5 7
Jersey Black 24 43
Jonamac 24 5
Keepsake 6 8
Kerr 29 5
Lady Williams 5 6
Liberty 5 7
Linda 24 6
Longfield 24
Macoun 24 5
Malinda 24 5
Mantet 24
Melba 5 6
Melrose 24 7
MN 1627 5 6
MN 1628 7 8
MN 1691 6 7
MN 1706 15 5
MN 1708 5 6
MN 1760 6
MN 1764 12 6
MN 1789 6
MN 1802 24 5
MN 1836 6
MN 1837 6
MN 1839 26 6
MN 1888 5 7
MN 1899 5 6
MN 1940 5 6
MN 2016 24 5
AA-44 24 6
Monroe 23 24
Montgomery 11 26
Nicola 5
NJ 31 7
NJ 53 12 6
Oriole 6
PRI 14-126 4 7
PRI 16-144 7
PRI 1661-2 5
PRI 54-12 6 7
PRI 855-102 7
Primula 24 6
Raritan 4 70
Regent 5
Russian Seedling 24
Sawa 12 6
Sciros 5
Sharon 12 24
Silken 5
Wildung 12 6
Splendour 5
State Fair 24 6
NJ 55 4 5
Co-op 29 5
Sunrise 5
Sweet Sixteen 5 6
Topaz 5 53
Vista Bella 12 5
Wealthy 24 6
Winesap 7
Winter Banana 4 5
Yellow Newtown 15 18
Yellow Transparent 29 6
0407-0001 5
0407-0005 5
0407-0006 5 8
0407-0007 5
0407-0008 5 8
0408-0003 5
0408-0004 5
0408-0005 5
0408-0007 5
0408-0008 5
0408-0010 5
0408-0011 5
0408-0014 5
0408-0015 5
0409-0022 5
0409-0024 5 6
0409-0028 5 6
0409-0030 5
0409-0032 5
0409-0035 5 6
0409-0036 5
0409-0038 5 6
0409-0039 5 6
0409-0040 5 6
0409-0043 5 6
0409-0045 5
0410-0002 5 6
0410-0003 5 8
0410-0005 5 8
0410-0006 5 8
0410-0010 5 6
0410-0011 5 8
0410-0012 5 6
0410-0013 5 6
0410-0015 5 6
0410-0017 5 8
0410-0018 5 6
0414-0010 5
0414-0015 5 8
0414-0017 5 8
0414-0018 5 6
0414-0019 5 8
0414-0020 5 6
0414-0021 6 8
0415-0001 5 6
0415-0004 5 6
0415-0005 5 6
0415-0011 5
0415-0012 5 6
0415-0013 5
0415-0014 5 8
0415-0016 5
0415-0017 5 6
0415-0019 5 6
0415-0020 5
0415-0025 5 6
AE_HCxJonf-145 5 7
AE_HCXJonf-148 6 7
AE_HCxJonf-157 6 7
AE_HCXJonf-162 5 7
AE_HCXJonf-168 4 5
AE_HCxJonf-175 5 7
AE_HCxJonf-183 6 7
AE_HCxJonf-185 5 7
AE0118-237 5
AE0118-238 5
AE0118-239 26 5
AE0118-240 5
AE0118-243 5 6
AE0118-244 5 6
AE0118-245 5
AE0118-246 5 6
AE0118-249 5
AE0206-159 24 5
AE0206-160 24 5
AE0206-161 24 5
AE0206-162 24 5
AE0206-163 24 5
AE0206-164 5 6
AE0206-165 5 6
AE0206-167 5 6
AE0206-168 5 6
AE0206-169 5 6
AE0206-170 24 5
AE0210-146 5 6
AE0210-147 24 5
AE0210-149 24 5
AE0210-150 24 5
AE0210-151 5 6
AE0210-152 5 6
AE0210-153 5 6
AE0210-154 24 5
AE0210-157 24 5
AE0210-158 5 6
AE0210-159 5 6
AE0210-162 5 6
AE0210-163 5 6
AE0210-164 5 6
AE0210-165 5 6
AE0210-166 5 6
AE0210-168 5 6
AE0210-169 5 6
AE0210-170 5 6
AE0210-171 24 5
AE0210-172 24 5
AE0210-173 24 5
AE0210-174 24 5
AE0213-175 24 5
AE0213-176 24 5
AE0213-177 24 5
AE0213-178 24 5
AE0213-179 24 6
AE0213-180 24 6
AE0213-181 24 5
AE0213-182 24 6
AE0213-183 24 6
AE0213-186 24 5
AE0213-187 24 6
AE0213-190 24 5
AE0213-193 24 6
AE0213-194 24 6
AE0213-195 24 5
AE0213-196 24 6
AE0213-197 24 5
AE0213-198 24 6
AE0213-199 24 5
AE0213-200 24 6
AE0213-201 24 5
AE0213-202 24 6
AE0213-205 24 6
AE0213-206 24 5
AE0251-323 5
AE0251-325 5 6
AE0251-327 5 6
AE0251-329 5 6
AE0251-330 5 6
AE0251-331 5
AE0251-342 5 6
AE0251-343 5
AE0406-239 5 6
AE0406-254 5 6
AE0406-258 5
AE0406-259 5
AE0406-263 5 6
AE0406-264 5 6
AE0406-266 5
AE0406-271 5
AE0406-274 5
AE0406-278 5 6
AE0406-281 5 6
AE0406-286 5 6
AE0406-288 5 6
AE0406-289 5 6
AE0406-294 5
AE0406-298 5
Minneiska 24 5
NJ 303955 5
PRI 612-1 5 7
Arlet 5 8
Co-op 39 5
Pinova 5
Scired 5
Scifresh 5
0409-0025 5 6
0409-0026 5
0409-0027 5 6
0409-0031 5 6
0409-0033 5
0409-0047 5 6
G-14-050 11 5
G-14-052 11 5
G-14-054 11 5
G-14-055 11 5
G-14-056 11 5
G-14-057 4 5
G-14-059 4 5
G-14-060 11 5
G-14-061 11 5
G-14-062 11 5
G-14-064 4 5
G-14-065 11 5
G-14-069 11 5
G-14-067 4 5
G-14-068 4 5
G-14-071 4 5
G-14-073 4 5
G-14-074 4 5
G-14-075 4 5
G-14-076 4 5
G-14-077 4 5
G-14-078 4 5
G-14-080 4 5
G-09-232 5 6
G-09-233 5
G-09-234 5
G-09-235 5 6
G-09-236 5
G-09-237 5 6
G-09-238 5
G-09-239 5
G-09-240 5 6
G-09-241 5 6
G-09-242 5
G-09-243 5 6
G-09-245 5 6
G-09-246 5 6
G-09-258 5 6
G-09-259 5
G-09-260 5
G-09-261 5 6
G-09-262 5 6
G-09-263 5 6
G-09-264 5 6
G-09-265 5 6
G-09-266 5 6
G-09-267 5 6
G-09-268 5 6
0408-0021 5
Wijcik McIntosh 73 74
Beauty of Bath 23 61
Priam 24 4
Northern Spy 5 8
Co-op 15 7
MN 1702 6 7
WA 2 5
WA 5 5 7
Pitmaston Pineapple 23 4
0411-0011 5
0411-0017 5
0411-0023 5
AE0250-086 5 6
AE0250-087 5 6
AE0250-089 5 6
AE0250-090 5 6
AE0250-092 5 6
AE0250-093 5 6
AE0250-094 5 6
AE0250-095 5 6
Sonya 5
Co-op 38 11 4
AE0250-096 5 6
AE0250-327 5 6
Co-op 30 5
Jonagrimes 4 6
AE0211-036 24 5
G-07-039 7 8
PRI 47-176 23 8
G-07-041 11 5
BC-8S-27-43 5
AE0250-091 24 5
AE0250-097 24 6
AE0250-325 24 6
AE0250-326 24 5
AE0250-329 24 5
AE0250-333 24 5
AE0250-334 24 6
AE0250-335 24 6
AE0250-336 24 5
AE0250-338 24 6
AE0250-341 24 5
AE0211-038 15 6
AE0211-043 39 5
AE0211-051 39 5
G-07-010 5 8
G-07-014 5 8
G-07-015 5 8
G-07-019 6 8
G-07-020 5 6
G-07-024 5 8
G-07-032 5 6
G-07-033 6 8
G-07-034 5 8
G-07-035 6 8
G-07-044 6 8
AE0211-053 24 6
AE0211-054 24 5
AE0250-088 6
AE0250-324 5 6
AE0250-328 24 5
AE0250-331 5 6
AE0250-332 24 5
AE0250-337 24 5
AE0250-339 24 6
Minnewashta 24 6
Autumn Crisp 23 4
G-14-066 4 5
Lu1-11-010 5 7
Lu1-11-013 5 7
Lu1-11-016 11 4
Lu1-11-017 4 7
Lu1-11-018 4 7
NJ 90 13 5
Lord Lambourne 53 6
Antonovka GH 29 6
Grimes Golden 2 4
Kidds Orange Red 5
Malus baccata Hansen #2 45
Malus baccata Jackii 76
Summerred 57 77
William's Pride 57 7
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-17-13Apple-RosBREED-3.9K-20191711.3911.39
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 23456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778798081
GDsnp02049--BABABA-AAB-B-BA--AABAAABABBA---AB--A-----BA-BA---B---A--AAB-BBB-BAABAAABBBAAAB
RosBREEDSNP_SNP_AG_3503210_Lg17_02049_MAF50_478011_exon1BAAABABAAAAAAB-ABAABAAB-BBAB-----AA-ABBBBBBBABBA-BAABAAB--BBA--BA-AAAAAAABBAB--B
RosBREEDSNP_SNP_AG_3529973_Lg17_02049_MAF10_MDP0000321089_exon5AAAAAABAAABAAAAABAA--AAAAAAAAA---AAA-AAAAAAAAB-----AAAAAAAA---B-AAABABAABAA--AAA
RosBREEDSNP_SNP_AG_3543730_Lg17_02049_MAF50_10410_exon1--AAABB--BBB-B-BBABBABBABABAABAB-----AABA--AAB--A--A--BAABBBBBBAAABBAAABAB-AABA-
RosBREEDSNP_SNP_GA_3492127_Lg17_02049_MAF20_54764_exon1BBBBBBBBAABBBBBBBBBABABBA--BBABBB---BBBBBABBBBBB---A--AB--BBAABBBBABAAABBBBBBBBB
RosBREEDSNP_SNP_TC_3496763_Lg17_02049_MAF30_MDP0000486709_exon3BAAAABBBBBAABBBBBABBABBABABBABAB-ABBABABBBA--BAA---B--BAAB---BBABAABBBAAAA-----A
Alignments
Feature NameTypeLocationAnalysis
Chr17 chromosome Chr17:3032262..3827186. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation