Mdo-HB-17-10

Haplotype Block Overview
Name Mdo-HB-17-10
Species Malus x domestica
Stock Haplotype [view all 429]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 14 3
Rome Beauty Law 22 8
Jonafree 8
Redfree 14 49
Spartan 3
Wagener 3 9
Worcester Pearmain 9
Tsugaru 3 8
Golden Delicious 3
Fuji 13 3
Empire 13 14
Gala 3
Honeycrisp 3 5
Elstar 3 9
Marshall McIntosh 14 3
Cripps Pink 3
Granny Smith 5 9
Jonathan 14 8
Ralls Janet 3
Delicious 13 3
Discovery 3 9
Prima 3 4
Fiesta 14 9
Ingrid Marie 14 9
Idared 14 9
Esopus Spitzenburg 14 3
Braeburn 3
Sansa 3 9
Lodi 14 5
James Grieve 14 3
Cripps Red 3 5
Burgundy 22 3
Akane 8 9
Ambrosia 13 3
Aurora Golden Gala 3
Beacon 3
Ben Davis 13 3 4 8
Cameo 13 3
Chinook 3
Clivia 3 9
Co-op 17 3
Co-op 18 45
Dayton 14 22 3
Delblush 3 8
Delcorf 38 5
Delorgue 5 8
Dolgo 4
Geheimrat Dr. Oldenburg 3 9
Duchess of Oldenburg 4 5
Early Cortland 13 14 5
Empress 3
F2 26829-2-2 4 8
Fantazja 14 8
Fireside 22 5
Fortune 22 3
Frostbite 5 8
Ginger Gold 3 5
GMAL 4327 4 9
GMAL 4328 4 9
GMAL 4329 13 8
GMAL 4332 4 9
Goodland 4
Haralson 3 5
Honeygold 3
Hudson 13 9
Jersey Black 2 9
Jonamac 3 8
Keepsake 5 9
Kerr 3 4
Lady Williams 3 5
Liberty 3 8
Linda 13 8
Longfield 8
Macoun 3 9
Malinda 22 3
Mantet 30 8
Melba 3 4
Melrose 13 8
MN 1627 3 5
MN 1628 8 9
MN 1691 22 4
MN 1706 10 13
MN 1708 3 5
MN 1760 5
MN 1764 14 5
MN 1789 4 5
MN 1802 3 8
MN 1836 5
MN 1837 4 5
MN 1839 14 5
MN 1888 22 3
MN 1899 3 5
MN 1940 3 4
MN 2016 3 4
AA-44 22 5
Monroe 14 22
Montgomery 14 3
Nicola 3
NJ 31 8
NJ 53 14 4
Oriole 4 5
PRI 14-126 3 4
PRI 14-510 3 8
PRI 16-144 8
PRI 1661-2 3
PRI 54-12 5 8
PRI 855-102 8
Primula 4 8
Raritan 10 13
Regent 14 3
Russian Seedling 8
Sawa 14 4
Sciros 3
Sharon 14 4
Silken 3
Wildung 14 5
Splendour 3
State Fair 5 8
NJ 55 3
Co-op 29 3
Sunrise 3
Sweet Sixteen 10 5
Topaz 3
Vista Bella 14 3
Wealthy 5 8
Winesap 13 8
Winter Banana 3
Yellow Newtown 54 55
Yellow Transparent 4 5
0407-0001 3
0407-0005 3
0407-0006 3 9
0407-0007 3
0407-0008 3 9
0408-0003 3
0408-0004 3
0408-0005 3
0408-0007 3
0408-0008 3
0408-0010 3
0408-0011 3
0408-0014 3
0408-0015 3
0409-0022 3
0409-0024 3 5
0409-0028 3 5
0409-0030 3
0409-0032 3 5
0409-0035 3 5
0409-0036 3
0409-0038 3 5
0409-0039 3 5
0409-0040 3 5
0409-0043 3 5
0409-0045 3
0410-0002 3 5
0410-0003 3 9
0410-0005 3 9
0410-0006 3 9
0410-0010 3 5
0410-0011 3 9
0410-0012 3 5
0410-0013 3 5
0410-0015 3 5
0410-0017 3 9
0410-0018 3 5
0414-0010 3
0414-0015 3 9
0414-0017 3 9
0414-0018 3 5
0414-0019 3 9
0414-0020 3 5
0414-0021 3 9
0415-0001 3 5
0415-0004 3 5
0415-0005 3 5
0415-0011 3
0415-0012 3 5
0415-0013 3
0415-0014 3 9
0415-0016 3
0415-0017 3 5
0415-0019 3 5
0415-0020 3
0415-0025 3 5
AE_HCxJonf-145 3 8
AE_HCXJonf-148 5 8
AE_HCxJonf-157 5 8
AE_HCXJonf-162 3 8
AE_HCXJonf-168 3
AE_HCxJonf-175 3 8
AE_HCxJonf-183 5 8
AE_HCxJonf-185 3 8
AE0118-237 3
AE0118-238 3
AE0118-239 14 3
AE0118-240 3
AE0118-243 3 5
AE0118-244 14 5
AE0118-245 3
AE0118-246 14 5
AE0118-249 3
AE0206-159 3 8
AE0206-160 3 8
AE0206-161 3 8
AE0206-162 3 4
AE0206-163 3 8
AE0206-164 3 4
AE0206-165 3 4
AE0206-167 3 4
AE0206-168 3 4
AE0206-169 3 4
AE0206-170 3 8
AE0210-146 13 3
AE0210-147 3 8
AE0210-149 13 3
AE0210-150 3 8
AE0210-151 13 3
AE0210-152 3 4
AE0210-153 3 8
AE0210-154 3 8
AE0210-157 3 8
AE0210-158 13 3
AE0210-159 13 3
AE0210-162 13 3
AE0210-163 13 3
AE0210-164 13 3
AE0210-165 13 3
AE0210-166 13 3
AE0210-168 13 3
AE0210-169 13 3
AE0210-170 13 3
AE0210-171 13 3
AE0210-172 3 8
AE0210-173 3 8
AE0210-174 3 8
AE0213-175 3 4
AE0213-176 3 9
AE0213-177 3 9
AE0213-178 3 9
AE0213-179 5 9
AE0213-180 5 9
AE0213-181 3 9
AE0213-182 5 9
AE0213-183 4 5
AE0213-186 3 9
AE0213-187 4 5
AE0213-190 3 4
AE0213-193 4 5
AE0213-194 4 5
AE0213-195 5 9
AE0213-196 5 9
AE0213-197 3 4
AE0213-198 5 9
AE0213-199 3 4
AE0213-200 3 9
AE0213-201 5 9
AE0213-202 4 5
AE0213-205 5 9
AE0213-206 3 9
AE0251-323 10 3
AE0251-325 3 5
AE0251-327 3 5
AE0251-329 3 5
AE0251-330 3 5
AE0251-331 10 3
AE0251-342 3 5
AE0251-343 10 3
AE0406-239 3 5
AE0406-254 3 5
AE0406-258 3
AE0406-259 3
AE0406-263 3 5
AE0406-264 3 5
AE0406-266 3
AE0406-271 3
AE0406-274 3
AE0406-278 3 5
AE0406-281 3 5
AE0406-286 3 5
AE0406-288 3 5
AE0406-289 3 5
AE0406-294 3
AE0406-298 3
Minneiska 3 8
NJ 303955 3
PRI 612-1 3 4
Arlet 3 9
Co-op 39 3
Pinova 3
Scired 3
Scifresh 3
0409-0025 3 5
0409-0026 3
0409-0027 3 5
0409-0031 3 5
0409-0033 3
0409-0047 3
G-14-050 3
G-14-052 3
G-14-054 3
G-14-055 3
G-14-056 3
G-14-057 3
G-14-059 3
G-14-060 3
G-14-061 3
G-14-062 3
G-14-064 3
G-14-065 3
G-14-069 3
G-14-067 3
G-14-068 3
G-14-071 3
G-14-073 3
G-14-074 3
G-14-075 3
G-14-076 3
G-14-077 3
G-14-078 3
G-14-080 3
G-09-232 3 5
G-09-233 3
G-09-234 3
G-09-235 3 5
G-09-236 3
G-09-237 3 5
G-09-238 3
G-09-239 3
G-09-240 3 5
G-09-241 3 5
G-09-242 3
G-09-243 3 5
G-09-245 3 5
G-09-246 3 5
G-09-258 3 5
G-09-259 3
G-09-260 3
G-09-261 3
G-09-262 3 5
G-09-263 3 5
G-09-264 3 5
G-09-265 3 5
G-09-266 3 5
G-09-267 3 5
G-09-268 3 5
0408-0021 3
Wijcik McIntosh 14 3
Beauty of Bath 3 50
Priam 3 8
Northern Spy 10 9
Co-op 15 13 4
MN 1702 22 5
WA 2 3
WA 5 13 3
Pitmaston Pineapple 13 3
0411-0011 3
0411-0017 3
0411-0023 3
AE0250-086 3 5
AE0250-087 3 5
AE0250-089 3 5
AE0250-090 3 5
AE0250-092 3 5
AE0250-093 3 5
AE0250-094 3 5
AE0250-095 3 5
Sonya 3
Co-op 38 3
AE0250-096 3 4
AE0250-327 3 4
Co-op 30 3
AE0211-036 3 9
G-07-039 13 9
PRI 14-152 3 8
PRI 47-176 14 4
G-07-041 3
BC-8S-27-43 3
AE0250-091 3 4
AE0250-097 4 5
AE0250-325 4 5
AE0250-326 3 4
AE0250-329 3 9
AE0250-333 3 4
AE0250-334 5 9
AE0250-335 4 5
AE0250-336 3 9
AE0250-338 5 9
AE0250-341 3 9
AE0211-038 5 9
AE0211-043 3 4
AE0211-051 3 4
G-07-010 3 9
G-07-014 3 9
G-07-015 9
G-07-019 5 9
G-07-020 3 5
G-07-024 3 9
G-07-032 3 5
G-07-033 5 9
G-07-034 3 9
G-07-035 5 9
G-07-044 5 9
AE0211-053 5 8
AE0211-054 3 8
AE0250-088 4 5
AE0250-324 3 4
AE0250-328 3 8
AE0250-331 3 4
AE0250-332 3 8
AE0250-337 3 8
AE0250-339 5 8
Minnewashta 4 8
Autumn Crisp 14 3
G-14-066 3
Lu1-11-010 13 3
Lu1-11-013 13 3
Lu1-11-016 3
Lu1-11-017 13 3
Lu1-11-018 13 3
NJ 90 14 3
Lord Lambourne 3 9
Antonovka GH 14 56
Grimes Golden 3
Kidds Orange Red 3
Malus baccata Hansen #2 13 5
Malus baccata Jackii 59
Summerred 5 51
William's Pride 14 3
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-17-10Apple-RosBREED-3.9K-2019179.339.34
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 2345678910111213141516171819202122232425262728293031323334353637383940414243444546474849505152535455565758596061
RosBREEDSNP_SNP_CT_2622909_Lg17_00210_MAF30_MDP0000206391_exon2-BABBBBBBBBBBAA--BBBAA----B--A---BB--BA---BBB-BAABABBAAABABB
RosBREEDSNP_SNP_GA_2617781_Lg17_00210_MAF40_MDP0000206392_exon1-BAB--BBBBBBAB---ABBBBBA-BBBAA-------BABABBBB--B--BBBBAAB--A
RosBREEDSNP_SNP_GA_2620041_Lg17_00210_MAF30_475784_exon1BBBBBBAAAABBBBA-BBBBBBBB--BABBAAAAB--ABBABA--A-A--A-BAAABA-A
RosBREEDSNP_SNP_GA_2657037_Lg17_00210_MAF10_1622321_exon3-BBAABBBB--BB-B-BBBBBAABB----------AB----BBBBBBBBBBBBBBBBBAB
RosBREEDSNP_SNP_GA_2688072_Lg17_00508_MAF30_1651528_exon2BBBBBBAABAAABBA-B--BBBBB--B--BAAAAB--AB--B---A-ABBA-BABBAABB
RosBREEDSNP_SNP_GT_2608050_Lg17_00210_MAF20_1622747_exon1BBBBBBBABBBBBBBBBBBBBBBBB-BBBBABAAB------BBBABBB--B-BABABB-B
RosBREEDSNP_SNP_TC_2691490_Lg17_00508_MAF10_345541_exon1AAAAAAABAAAAAAAAAAA-AAAAA-AAAABA-BA------AAABAAA----BAAAB--A
Alignments
Feature NameTypeLocationAnalysis
Chr17 chromosome Chr17:2801891..2909952. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation