Mdo-HB-17-1

Haplotype Block Overview
Name Mdo-HB-17-1
Species Malus x domestica
Stock Haplotype [view all 428]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 12 15
Rome Beauty Law 12 6
Jonafree 15 6
Redfree 47 53
Spartan 5
Wagener 10 6
Worcester Pearmain 12
Tsugaru 12 5
Golden Delicious 4 5
Fuji 11 5
Empire 12
Gala 12 5
Honeycrisp 5 7
Elstar 12 4
Marshall McIntosh 12 5
Cripps Pink 5
Granny Smith 11 14
Jonathan 12
Ralls Janet 11 3
Delicious 12 5
Discovery 12 5
Prima 5 6
821 15 16
Fiesta 12 15
Ingrid Marie 12 15
Idared 10 12
Esopus Spitzenburg 12 4
Braeburn 12
Sansa 12
Lodi 15 7
James Grieve 11 15
Cripps Red 11 5
Burgundy 12 5
Akane 12
Ambrosia 12 5
Aurora Golden Gala 12 5
Beacon 15
Ben Davis 11 15 5
Cameo 12 4
Chinook 5
Clivia 12
Co-op 17 15 5
Co-op 18 47 48
Dayton 12 5 6
Delblush 11 5
Delorgue 12 7
Dolgo 6
Geheimrat Dr. Oldenburg 10 12
Duchess of Oldenburg 6 7
Early Cortland 11 12 7
Empress 12 5
F2 26829-2-2 15
Fantazja 12
Fireside 6 7
Fortune 12 6
Frostbite 10 7
Ginger Gold 5 7
GMAL 4327 15
GMAL 4328 15 6
GMAL 4329 15
GMAL 4332 15
Goodland 6 7
Haralson 15 7
Honeygold 15 5
Hudson 11 12
Jersey Black 30
Jonamac 12 5
Keepsake 11 7
Kerr 15 6
Lady Williams 11 5
Liberty 15 5
Linda 11 12
Liveland Raspberry 14 31
Longfield 47 56
Macoun 30 5
Malinda 14 15
Mantet 6
Melba 31 5
MN 1627 5 7
MN 1628 10 11
MN 1691 6
MN 1706 11 41
MN 1708 5 7
MN 1760 7
MN 1764 12 7
MN 1789 6 7
MN 1802 12 15
MN 1836 7
MN 1837 6 7
MN 1839 15 7
MN 1888 6 7
MN 1899 15 6
MN 1940 5 6
MN 2016 5 6
AA-44 12 6
Monroe 12
Montgomery 11 15
Nicola 12 5
NJ 31 6
NJ 53 12 6
Oriole 14 7
PRI 14-126 15 4
PRI 14-510 15 5
PRI 16-144 15
PRI 1661-2 5
PRI 54-12 15 7
PRI 855-102 15
Primula 31 4
Raritan 11 5
Regent 12 15
Russian Seedling 15
Sawa 12 4
Sciros 5
Sharon 12 6
Silken 5
Wildung 12 7
Splendour 5
State Fair 6 7
NJ 55 15 4
Co-op 29 10 5
Sunrise 15 5
Sweet Sixteen 6 7
Topaz 11 5
Vista Bella 12
Wealthy 12 7
Winesap 11 12
Winter Banana 10 4
Yellow Newtown 10 11
Yellow Transparent 6 7
0407-0001 5
0407-0005 5
0407-0006 10 5
0407-0007 5
0407-0008 10 12
0408-0003 12 5
0408-0004 12 5
0408-0005 12 5
0408-0007 12 5
0408-0008 5
0408-0010 12 5
0408-0011 5
0408-0014 5
0408-0015 12 5
0409-0022 5
0409-0024 12 5
0409-0028 12 7
0409-0030 5
0409-0032 12 7
0409-0035 12 7
0409-0036 12 5
0409-0038 12 7
0409-0039 5 7
0409-0040 12 7
0409-0043 12 7
0409-0045 5
0410-0002 11 12
0410-0003 11 5
0410-0005 11 12
0410-0006 11 5
0410-0010 12 14
0410-0011 11 12
0410-0012 12 14
0410-0013 14 5
0410-0015 14 5
0410-0017 11 5
0410-0018 14 5
0414-0010 5
0414-0015 10 5
0414-0017 10 5
0414-0018 5 7
0414-0019 10 5
0414-0020 5 7
0414-0021 10 5
0415-0001 5 7
0415-0004 5 7
0415-0005 5 7
0415-0011 5
0415-0012 5 7
0415-0013 5
0415-0014 12 5
0415-0016 5
0415-0017 5 7
0415-0019 5
0415-0020 5
0415-0025 5 7
AE_HCxJonf-145 5 6
AE_HCXJonf-148 15 7
AE_HCxJonf-157 15 5
AE_HCXJonf-162 15 5
AE_HCXJonf-168 4 5
AE_HCxJonf-175 15 5
AE_HCxJonf-183 6 7
AE_HCxJonf-185 5 6
AE0118-237 15 5
AE0118-238 15 5
AE0118-239 15 5
AE0118-240 12 5
AE0118-243 15 7
AE0118-244 12 7
AE0118-245 12 5
AE0118-246 12 7
AE0118-249 15 5
AE0206-159 5 7
AE0206-160 5 7
AE0206-161 5 7
AE0206-162 5 6
AE0206-163 5 7
AE0206-164 5 6
AE0206-165 5 7
AE0206-167 5 7
AE0206-168 5 6
AE0206-169 5 6
AE0206-170 5 7
AE0210-146 15
AE0210-147 15
AE0210-149 15
AE0210-150 15 5
AE0210-151 15 5
AE0210-152 5 6
AE0210-153 15
AE0210-154 15
AE0210-157 15 5
AE0210-158 15
AE0210-159 15
AE0210-162 15
AE0210-163 15 5
AE0210-164 15
AE0210-165 15
AE0210-166 15 5
AE0210-168 15
AE0210-169 15
AE0210-170 15 5
AE0210-171 15 5
AE0210-172 15
AE0210-173 15 5
AE0210-174 15 5
AE0213-175 15 5
AE0213-176 15 7
AE0213-177 15 5
AE0213-178 15 5
AE0213-179 15 7
AE0213-180 15 7
AE0213-181 15 5
AE0213-182 15 7
AE0213-183 15 7
AE0213-186 15 5
AE0213-187 15 7
AE0213-190 15 5
AE0213-193 15 7
AE0213-194 15 7
AE0213-195 15 7
AE0213-196 15 7
AE0213-197 15 5
AE0213-198 15 7
AE0213-199 15 5
AE0213-200 15 5
AE0213-201 15 7
AE0213-202 15 7
AE0213-205 15 7
AE0213-206 15 5
AE0251-323 5 6
AE0251-325 5 6
AE0251-327 5 7
AE0251-329 5 7
AE0251-330 5 7
AE0251-331 5 6
AE0251-342 5 7
AE0251-343 5 6
AE0406-239 5 7
AE0406-254 5 7
AE0406-258 5
AE0406-259 5
AE0406-263 5 7
AE0406-264 5 7
AE0406-266 5
AE0406-271 5
AE0406-274 5
AE0406-278 5 7
AE0406-281 5 7
AE0406-286 5 7
AE0406-288 5 7
AE0406-289 5 7
AE0406-294 5
AE0406-298 5
Minneiska 5 7
NJ 303955 15
PRI 612-1 15 5
Arlet 10 5
Co-op 39 5
Pinova 12 5
Scired 12 5
Scifresh 12 5
0409-0025 12 7
0409-0026 5
0409-0027 5 7
0409-0031 5 7
0409-0033 5
0409-0047 5
G-14-050 11 5
G-14-052 11 12
G-14-054 11 12
G-14-055 11 12
G-14-056 11 12
G-14-057 12 5
G-14-059 12
G-14-060 11 12
G-14-061 11 5
G-14-062 12
G-14-064 11 5
G-14-065 11 12
G-14-069 11 5
G-14-067 12
G-14-068 11 5
G-14-071 12
G-14-073 12
G-14-074 12
G-14-075 12 5
G-14-076 12 5
G-14-077 12 5
G-14-078 12
G-09-232 12 7
G-09-233 12 5
G-09-234 12 5
G-09-235 12 7
G-09-236 12 5
G-09-237 12 7
G-09-238 12 5
G-09-239 12 5
G-09-240 12 7
G-09-241 12 7
G-09-242 12 7
G-09-243 12 7
G-09-245 12 7
G-09-246 12 7
G-09-258 12 7
G-09-259 12 5
G-09-260 12 7
G-09-261 12 5
G-09-262 12 7
G-09-263 12 7
G-09-264 12 7
G-09-265 12 7
G-09-266 12 7
G-09-267 12 7
G-09-268 12 7
0408-0021 12 5
Wijcik McIntosh 12 5
Beauty of Bath 5
Priam 12 4
Northern Spy 11 6
Co-op 15 12 15
MN 1702 6 7
WA 2 12 5
WA 5 12 5
Pitmaston Pineapple 12 4
0411-0011 5
0411-0017 5
0411-0023 5
AE0250-086 5 7
AE0250-087 5 7
AE0250-089 5 7
AE0250-090 5 7
AE0250-092 5 7
AE0250-093 5 7
AE0250-094 5 7
AE0250-095 5 7
Sonya 12
Co-op 38 15 4
AE0250-096 6
AE0250-327 12 6
Co-op 30 5
AE0211-036 15 7
G-07-039 12
PRI 14-152 15 5
PRI 47-176 12 15
G-07-041 11 12
BC-8S-27-43 5
AE0250-091 15 5
AE0250-097 15 7
AE0250-325 15 7
AE0250-326 15 5
AE0250-329 15 5
AE0250-333 15 5
AE0250-334 15 7
AE0250-335 15 7
AE0250-336 15 5
AE0250-338 15 5
AE0250-341 15 5
AE0211-038 15 7
AE0211-043 5 6
AE0211-045 5 6
AE0211-051 5 6
G-07-010 11 12
G-07-014 11 12
G-07-015 11 12
G-07-019 12 14
G-07-020 12 14
G-07-024 11 12
G-07-032 12 14
G-07-033 12 14
G-07-034 11 12
G-07-035 12 14
G-07-044 12 14
AE0211-053 5 7
AE0211-054 5 7
AE0250-088 6 7
AE0250-324 5 6
AE0250-328 6 7
AE0250-332 5 7
AE0250-337 5 6
AE0250-339 7
Minnewashta 6 7
Autumn Crisp 12 4
G-14-066 12 5
Lu1-11-010 5
Lu1-11-013 5
Lu1-11-016 11 4
Lu1-11-017 5
Lu1-11-018 4 5
NJ 90 12 5
Lord Lambourne 11 12
Antonovka GH 6
Grimes Golden 2 4
Kidds Orange Red 12 5
Malus baccata Hansen #2 49 57
Malus baccata Jackii 16
Summerred 46 7
William's Pride 4 5
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-17-1Apple-RosBREED-3.9K-20191700.37
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 23456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263
GDsnp00091BBBABB--AAAABBB--AA---BAB-BABBBA-BAB--AAB--AABBA-A-ABBABB-----
RosBREEDSNP_SNP_GA_13618_Lg17_00091_MAF30_MDP0000791232_exon8ABBBBBBBBBBBAAABABB--AABB----BAB-ABBABBBBBBABABABBBBABBBBB----
RosBREEDSNP_SNP_GA_33531_Lg17_00091_MAF10_1674744_exon1--BBBBBBABB-BBBBB--BBBBBBB-BBBBBB-----BABBBB-BBBBBBBBBBB-B--BB
RosBREEDSNP_SNP_GA_49174_Lg17_00091_MAF20_1640662_exon1ABBBBBBBBBBBBABBABB--AABB-ABABAB-ABB--BBBBBABABABBBBBABBBB----
RosBREEDSNP_SNP_TC_300897_Lg17_01974_MAF20_1620327_exon12AAAAAAAAAABAAAA--BAAAAABA-AAAAAA-ABA---AAABBAAAAA-AAAABAABBAAA
RosBREEDSNP_SNP_TC_312936_Lg17_01974_MAF20_216975_exon1BAAAAAAAAAAABBAABAA--BBAA-BABABA-BAABAAAAAAAAABAAAABABBBAA----
RosBREEDSNP_SNP_TC_45523_Lg17_00091_MAF10_1655480_exon4--AAABBAAAA-AAAAA--BAAAAB--AA---A-----AA-AAAAAAAAA-ABAAAB---BA
RosBREEDSNP_SNP_TG_71128_Lg17_00091_MAF40_1678954_exon1AAABBB--AAAAAAA--ABBA-----ABABABA--B---BABAABABAAABAABAABAAB--
Alignments
Feature NameTypeLocationAnalysis
Chr17 chromosome Chr17:294987..575905. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation