Mdo-HB-16-7

Haplotype Block Overview
Name Mdo-HB-16-7
Species Malus x domestica
Stock Haplotype [view all 425]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 4 5
Rome Beauty Law 4 5
Jonafree 4 5
Redfree 31 68
Spartan 13 5
Wagener 21 22
Worcester Pearmain 5 7
Tsugaru 4 5
Golden Delicious 4 5
Fuji 4 5
Empire 13 4
Gala 4 5
Honeycrisp 10 7
Elstar 4 5
Marshall McIntosh 11 13
Cripps Pink 12 5
Granny Smith 11 4
Jonathan 4 5
Ralls Janet 3 5
Delicious 4 5
Discovery 12 7
Prima 10 5
821 10
Fiesta 4 5
Ingrid Marie 4 5
Idared 21 4
Esopus Spitzenburg 13 5
Braeburn 11 4
Sansa 4 5
Lodi 5 67
James Grieve 4 5
Cripps Red 11 4
Burgundy 4
Akane 4 5
Ambrosia 4 5
Aurora Golden Gala 4 5
Beacon 21 50
Ben Davis 11 4
Cameo 4 7
Chinook 4 5
Clivia 5 7
Co-op 17 4 5
Co-op 18 13 64
Dayton 4 5 6
Delblush 4 5
Delorgue 4 5
Dolgo 13 51
Geheimrat Dr. Oldenburg 4 7
Duchess of Oldenburg 6 7
Early Cortland 11 4 5
Empress 13 4
F2 26829-2-2 10 4
Fantazja 11 4
Fireside 4 5
Fortune 12 5
Frostbite 10 6
Ginger Gold 4 67
GMAL 4327 11 5
GMAL 4328 38 39
GMAL 4329 5
GMAL 4332 5
Goodland 4 7
Haralson 5 6
Honeygold 5
Hudson 13 5
Jersey Black 12
Jonamac 11 4
Keepsake 10 5
Kerr 13 6
Lady Williams 11 12
Liberty 11 6
Linda 4 6
Liveland Raspberry 2 22
Longfield 28 71
Macoun 11 12
Malinda 5
Melba 13 2
MN 1627 5 7
MN 1628 10 5
MN 1691 4 7
MN 1706 6
MN 1708 7
MN 1760 6
MN 1764 11 6
MN 1789 4 5
MN 1802 5 6
MN 1836 10 6
MN 1837 4 7
MN 1839 4 5
MN 1888 4 5
MN 1899 11 6
MN 1940 4
MN 2016 4 6
AA-44 4 5
Monroe 4 5
Montgomery 4 67
Nicola 4 5
NJ 31 4
NJ 53 21 31
Oriole 22 6
PRI 14-126 4
PRI 14-510 10 5
PRI 1661-2 11 4
PRI 54-12 4 6
PRI 855-102 5
Primula 13 5
Raritan 21 31
Regent 11 5
Russian Seedling 11
Sawa 4 5
Sciros 4 5
Sharon 11 7
Silken 5
Wildung 11 4
Splendour 4 5
State Fair 12 6
NJ 55 4 5
Co-op 29 4 5
Sunrise 13 5
Sweet Sixteen 10 5
Topaz 4 7
Wealthy 5 6
Winesap 11 4
Winter Banana 5
Yellow Newtown 11 5
Yellow Transparent 12 5
0407-0001 4 5
0407-0005 5
0407-0006 5
0407-0007 4 5
0407-0008 4 5
0408-0003 4
0408-0004 4
0408-0005 4 5
0408-0007 4 5
0408-0008 11 4
0408-0010 11 4
0408-0011 4 5
0408-0014 11 4
0408-0015 4
0409-0022 10 4
0409-0024 10 4
0409-0028 5 7
0409-0030 4 7
0409-0032 10 5
0409-0035 5 7
0409-0036 4 7
0409-0038 10 5
0409-0039 10 5
0409-0040 5 7
0409-0043 5 7
0409-0045 10 4
0410-0002 4
0410-0003 11 5
0410-0005 4
0410-0006 4
0410-0010 4 5
0410-0011 11 5
0410-0012 4
0410-0013 4
0410-0015 4
0410-0017 4 5
0410-0018 4 5
0414-0010 10 5
0414-0015 4 7
0414-0017 4 7
0414-0018 4 7
0414-0019 5 7
0414-0020 10 4
0414-0021 10 5
0415-0001 10 4
0415-0004 10 11
0415-0005 10 4
0415-0011 11 7
0415-0012 4 7
0415-0013 10 4
0415-0014 4 7
0415-0016 10 4
0415-0017 10 11
0415-0019 4 7
0415-0020 4 7
0415-0025 10 11
AE_HCxJonf-145 4 7
AE_HCXJonf-148 5 7
AE_HCxJonf-157 5 7
AE_HCXJonf-162 10 5
AE_HCXJonf-168 13 7
AE_HCxJonf-175 10 5
AE_HCxJonf-183 5 7
AE_HCxJonf-185 10 4
AE0118-237 5 7
AE0118-238 10 5
AE0118-239 5 7
AE0118-240 10 5
AE0118-243 10 11
AE0118-244 11 7
AE0118-245 11 7
AE0118-246 11 7
AE0118-249 10 11
AE0206-159 4 5
AE0206-160 4 5
AE0206-161 4 6
AE0206-162 4
AE0206-163 4
AE0206-164 4 6
AE0206-165 5 6
AE0206-167 4 5
AE0206-168 5 6
AE0206-169 4 5
AE0206-170 4 5
AE0210-146 5
AE0210-147 13 5
AE0210-149 13 5
AE0210-150 5
AE0210-151 5
AE0210-152 13 6
AE0210-153 5
AE0210-154 5
AE0210-157 5
AE0210-158 5
AE0210-159 5
AE0210-162 13 5
AE0210-163 5
AE0210-164 13 5
AE0210-165 5
AE0210-166 13 5
AE0210-168 5
AE0210-169 5
AE0210-170 5
AE0210-171 5
AE0210-172 5
AE0210-174 13 5
AE0213-175 5 67
AE0213-176 4 5
AE0213-177 5 67
AE0213-178 4 5
AE0213-179 4 5
AE0213-180 5 67
AE0213-181 5 67
AE0213-182 4 5
AE0213-183 4 5
AE0213-186 4 5
AE0213-187 4 5
AE0213-190 5 67
AE0213-193 5 67
AE0213-194 5 67
AE0213-195 4 5
AE0213-196 5 67
AE0213-197 5 67
AE0213-198 4 5
AE0213-199 4 5
AE0213-200 4 5
AE0213-201 4 5
AE0213-202 4 5
AE0213-205 4 5
AE0213-206 4 5
AE0251-323 10 5
AE0251-325 10 5
AE0251-327 5
AE0251-329 5
AE0251-330 10 5
AE0251-331 10 4
AE0251-342 4 5
AE0251-343 10 5
AE0406-239 5 7
AE0406-254 5 7
AE0406-258 10 5
AE0406-259 10 5
AE0406-263 5 7
AE0406-264 10 5
AE0406-266 10 5
AE0406-271 10 5
AE0406-274 10 5
AE0406-278 5 7
AE0406-281 10 5
AE0406-286 5 7
AE0406-288 5 7
AE0406-289 10 5
AE0406-294 5 7
AE0406-298 5 7
Minneiska 6 7
NJ 303955 4
PRI 612-1 4 5
Arlet 4 5
Co-op 39 65 7
Pinova 5 7
Scired 4 5
Scifresh 11 4
0409-0025 10 5
0409-0026 10 4
0409-0027 10 5
0409-0031 10 5
0409-0033 10 4
0409-0047 10 5
G-14-050 5 7
G-14-052 4 5
G-14-054 4 7
G-14-055 4 7
G-14-056 4 7
G-14-057 4 7
G-14-059 5 7
G-14-060 4 7
G-14-061 4 7
G-14-062 5 7
G-14-064 5 7
G-14-065 4 5
G-14-069 4 7
G-14-067 5 7
G-14-068 5 7
G-14-071 5 7
G-14-073 4 7
G-14-074 5 7
G-14-075 4 7
G-14-076 4 7
G-14-077 4 7
G-14-078 4 7
G-14-080 5 7
G-09-232 4 67
G-09-233 11 4
G-09-234 4 67
G-09-235 11 4
G-09-236 11 4
G-09-237 11 67
G-09-238 11 4
G-09-239 11 67
G-09-240 4
G-09-241 4 67
G-09-242 11 4
G-09-243 4
G-09-245 4
G-09-246 4
G-09-258 4
G-09-259 4 67
G-09-260 4
G-09-261 11 67
G-09-262 4 67
G-09-263 4
G-09-264 4 67
G-09-265 4
G-09-266 4 67
G-09-267 4
G-09-268 4 67
0408-0021 4 5
Wijcik McIntosh 11 13
Beauty of Bath 11 12
Priam 4 5
Northern Spy 4 5
Co-op 15 4
MN 1702 4 6
WA 2 4 5
WA 5 4 5
Pitmaston Pineapple 4 5
0411-0011 11 4
0411-0017 11 4
0411-0023 4
AE0250-086 5
AE0250-087 4 5
AE0250-089 4 5
AE0250-090 10 4
AE0250-093 10 5
AE0250-094 10 4
AE0250-095 4 5
Sonya 4 5
Co-op 38 4 5
AE0250-096 5 7
AE0250-327 5 7
Co-op 30 11 4
Jonagrimes 2 7
AE0211-036 4 5
G-07-039 13 5
PRI 14-152 4 5
G-07-041 5
BC-8S-27-43 4 5
AE0250-091 5 7
AE0250-097 11 7
AE0250-325 5 7
AE0250-326 10 11
AE0250-329 10 11
AE0250-333 5 7
AE0250-334 10 11
AE0250-335 5 7
AE0250-336 5 7
AE0250-338 10 11
AE0250-341 11 7
AE0211-038 38 4
AE0211-043 39 67
AE0211-045 38 4
AE0211-051 38 67
G-07-010 4
G-07-014 11 4
G-07-015 11 4
G-07-019 4
G-07-020 11 5
G-07-024 4
G-07-032 4
G-07-033 4 5
G-07-034 11 5
G-07-035 11 5
G-07-044 11 4
AE0211-053 4 67
AE0211-054 4 6
AE0250-088 10 6
AE0250-324 6 7
AE0250-328 10 6
AE0250-331 10 6
AE0250-332 4 7
AE0250-337 4 7
AE0250-339 10 4
Minnewashta 4 6
Autumn Crisp 4 5
G-14-066 5 7
Lu1-11-010 13 4
Lu1-11-013 4 5
Lu1-11-016 13 4
Lu1-11-017 4 5
Lu1-11-018 13 4
NJ 90 12 13
Lord Lambourne 4 7
Antonovka GH 31 68
Grimes Golden 2 4
Kidds Orange Red 4 5
Malus baccata Hansen #2 72 73
Malus baccata Jackii 72 74
Summerred 4 6
William's Pride 13
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-16-7Apple-RosBREED-3.9K-2019168.478.48
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
GDsnp01734ABBAAA--AAAA-ABAA--ABBABAABAAA---A--AABAAAAAAAAAAAAABAAAAB--AABBAABABAAAA
RosBREEDSNP_SNP_AG_1617869_Lg16_01734_MAF20_248174_exon1AAAABAAAAABAAAABABAAAAAAABBBBA--AAAA----ABAAAAAABBAAABAB--AAAAAAAnullABAAAAA
RosBREEDSNP_SNP_CT_1540624_Lg16_LAR1_MAF40_1618769_exon2ABBABA--BABB-AB--BBBA-ABABBBBA--ABB-ABBBBBAA--BAAB--BBAB--ABAAABABBBBBBAB
RosBREEDSNP_SNP_CT_1545819_Lg16_LAR1_MAF20_1637865_exon3--BBABBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBABB-ABBBBB-A-BBBABA--BBBABBABBABABBA
RosBREEDSNP_SNP_GT_1578941_Lg16_01734_MAF20_90585_exon1BBBBBBBBBABBBBBBBBBBBBBBBBBBBBBBABB-ABBBBBABBABBBBBB---B--BBAABBABBBBB---
RosBREEDSNP_SNP_GT_1614876_Lg16_01734_MAF40_975544_exon1--ABAB--ABAA---ABAABAABA--AABA--B-A-BAAA---AABA-A-ABAABA----BABABABABAABA
RosBREEDSNP_SNP_TC_1571002_Lg16_01734_MAF40_216397_exon1BAABAAABBAAA-BAABAABAA--AAA-BABAABB-AAAAAAABBA-AAB--AAA-BA---ABBBABBAABBB
Alignments
Feature NameTypeLocationAnalysis
Chr16 chromosome Chr16:3409835..3489107. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation