Mdo-HB-16-5

Haplotype Block Overview
Name Mdo-HB-16-5
Species Malus x domestica
Stock Haplotype [view all 428]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 4 5
Rome Beauty Law 11 5
Jonafree 4 5
Redfree 10 24
Spartan 11 5
Wagener 10 24
Worcester Pearmain 5 7
Tsugaru 5
Golden Delicious 4 5
Fuji 4 5
Empire 11 4
Gala 4 5
Honeycrisp 10 7
Elstar 4 5
Marshall McIntosh 11 7
Cripps Pink 11 5
Granny Smith 4 7
Jonathan 4 5
Ralls Janet 3 5
Delicious 4 5
Discovery 15 7
Prima 5 6
821 10
Fiesta 4 5
Ingrid Marie 4 5
Idared 10 4
Esopus Spitzenburg 10 5
Braeburn 4 7
Sansa 4 5
Lodi 11 5
James Grieve 4 5
Cripps Red 4 7
Burgundy 11
Akane 4 5
Ambrosia 4 5
Aurora Golden Gala 4 5
Beacon 11 6
Ben Davis 4 5
Cameo 4 7
Chinook 4 5
Clivia 5 7
Co-op 17 11 5
Co-op 18 4 5
Dayton 4 5 6
Delblush 4 5
Delorgue 4 5
Dolgo 10 45
Geheimrat Dr. Oldenburg 4 7
Duchess of Oldenburg 6 7
Early Cortland 5 7
Empress 11 4
F2 26829-2-2 10 4
Fantazja 5 7
Fireside 4 5
Fortune 15 5
Frostbite 10 6
Ginger Gold 11 4
GMAL 4327 5 7
GMAL 4328 6 7
GMAL 4329 5
GMAL 4332 5 6
Goodland 24 7
Haralson 11 6
Honeygold 11 5
Hudson 11 5
Jersey Black 11 39
Jonamac 4 7
Keepsake 10 5
Kerr 10 6
Lady Williams 11 7
Liberty 6 7
Linda 5 6
Longfield 10 6
Macoun 11 7
Malinda 11 5
Mantet 5
Melba 11 5
Melrose 4 5
MN 1627 5 7
MN 1628 10 5
MN 1691 4 7
MN 1706 6
MN 1708 10 7
MN 1760 6
MN 1764 6 7
MN 1789 4 5
MN 1802 11 6
MN 1836 10 6
MN 1837 4 7
MN 1839 4 5
MN 1888 4 5
MN 1899 6 7
MN 1940 4
MN 2016 4 6
AA-44 4 5
Monroe 11 5
Montgomery 11 4
Nicola 4 5
NJ 31 4
NJ 53 11 5
Oriole 5 6
PRI 14-126 4
PRI 14-510 10 5
PRI 1661-2 4 7
PRI 54-12 4 6
PRI 855-102 5
Primula 11 5
Raritan 10 49
Regent 11 7
Russian Seedling 5 7
Sawa 5
Sciros 5
Sharon 7
Silken 11 5
Wildung 4 7
Splendour 4 5
State Fair 5 6
NJ 55 4 5
Co-op 29 4
Sunrise 11 5
Sweet Sixteen 10 5
Topaz 4 7
Vista Bella 11 5
Wealthy 5 6
Winesap 4 5
Winter Banana 4 5
Yellow Newtown 5 7
Yellow Transparent 5 6
0407-0001 4 5
0407-0005 5
0407-0006 5
0407-0007 4 5
0407-0008 5
0408-0003 4
0408-0004 4
0408-0005 4 5
0408-0007 4 5
0408-0008 4 7
0408-0010 4 7
0408-0011 4 5
0408-0014 4 7
0408-0015 4
0409-0022 10 4
0409-0024 10 4
0409-0028 5 7
0409-0030 4 7
0409-0032 10 5
0409-0035 5 7
0409-0036 4 7
0409-0038 10 5
0409-0039 10 5
0409-0040 5 7
0409-0043 5 7
0409-0045 10 4
0410-0002 4
0410-0003 5 7
0410-0005 4
0410-0006 4
0410-0010 4 5
0410-0011 5 7
0410-0012 4
0410-0013 4
0410-0015 4
0410-0017 4 5
0410-0018 4 5
0414-0010 10 5
0414-0015 4 7
0414-0017 7
0414-0018 4 7
0414-0019 5 7
0414-0020 10 4
0414-0021 10 5
0415-0001 10 4
0415-0004 10 7
0415-0005 10 4
0415-0011 7
0415-0012 7
0415-0013 10 4
0415-0014 4 7
0415-0016 10 4
0415-0017 10 7
0415-0019 4 7
0415-0020 4 7
0415-0025 10 7
AE_HCxJonf-145 4 7
AE_HCXJonf-148 5 7
AE_HCxJonf-157 5 7
AE_HCXJonf-162 10 5
AE_HCXJonf-168 11 7
AE_HCxJonf-175 10 5
AE_HCxJonf-183 5 7
AE_HCxJonf-185 10 4
AE0118-237 11 7
AE0118-238 10 11
AE0118-239 5 7
AE0118-240 10 11
AE0118-243 10 7
AE0118-244 7
AE0118-245 7
AE0118-246 11 7
AE0118-249 10 7
AE0206-159 4 5
AE0206-160 4 5
AE0206-161 4 6
AE0206-162 4
AE0206-163 4
AE0206-164 4 6
AE0206-165 5 6
AE0206-167 4 5
AE0206-168 6
AE0206-169 4 5
AE0206-170 4
AE0210-146 5
AE0210-147 11 5
AE0210-149 11 5
AE0210-150 5
AE0210-151 5
AE0210-152 11 6
AE0210-153 5
AE0210-154 5
AE0210-157 5
AE0210-158 5
AE0210-159 5
AE0210-162 11 5
AE0210-163 5
AE0210-164 11 5
AE0210-165 5
AE0210-166 11 5
AE0210-168 5
AE0210-169 5
AE0210-170 5
AE0210-171 5
AE0210-172 5
AE0210-173 5
AE0210-174 11 5
AE0213-175 11 6
AE0213-176 4 6
AE0213-177 11 6
AE0213-178 4 6
AE0213-179 4 5
AE0213-180 11 5
AE0213-181 11 6
AE0213-182 4 5
AE0213-183 4 5
AE0213-186 4 6
AE0213-187 4 5
AE0213-190 11 5
AE0213-193 11 5
AE0213-194 11 5
AE0213-195 4 5
AE0213-196 4 6
AE0213-197 11 6
AE0213-198 4 5
AE0213-199 4 6
AE0213-200 4 5
AE0213-201 4 6
AE0213-205 4 6
AE0213-206 4 6
AE0251-323 10 5
AE0251-325 10 5
AE0251-327 5
AE0251-329 5
AE0251-330 10 5
AE0251-331 10 4
AE0251-342 4 5
AE0251-343 10 5
AE0406-239 11 7
AE0406-254 11 7
AE0406-258 10 5
AE0406-259 10 5
AE0406-263 5 7
AE0406-264 10 5
AE0406-266 10 11
AE0406-271 10 11
AE0406-274 10 11
AE0406-278 11 7
AE0406-281 10 11
AE0406-286 11 7
AE0406-288 5 7
AE0406-289 10 11
AE0406-294 11 7
AE0406-298 11 7
Minneiska 10 6
NJ 303955 4
PRI 612-1 4 5
Arlet 4 5
Co-op 39 11
Pinova 5 7
Scired 4 5
Scifresh 4 7
0409-0025 10 5
0409-0026 10 4
0409-0027 10 5
0409-0031 10 5
0409-0033 10 4
0409-0047 10 5
G-14-050 5 7
G-14-052 5
G-14-054 4 7
G-14-055 4 7
G-14-056 4 7
G-14-057 4 7
G-14-059 5 7
G-14-060 4 7
G-14-061 4 7
G-14-062 5 7
G-14-064 5 7
G-14-065 4 5
G-14-069 4 7
G-14-067 5 7
G-14-068 5 7
G-14-071 5 7
G-14-073 4 7
G-14-074 5 7
G-14-075 4 7
G-14-076 4 7
G-14-077 4 7
G-14-078 4 7
G-14-080 5 7
G-09-232 11 4
G-09-233 4 7
G-09-234 11 4
G-09-235 4 7
G-09-236 4 7
G-09-237 11 7
G-09-238 4 7
G-09-239 11 7
G-09-240 4
G-09-241 11 4
G-09-242 4 7
G-09-243 4
G-09-245 4
G-09-246 4
G-09-258 4
G-09-259 11 4
G-09-260 4
G-09-261 11 7
G-09-262 11 4
G-09-263 4
G-09-264 11 4
G-09-265 4
G-09-266 11 4
G-09-267 4
G-09-268 11 4
0408-0021 4 5
Wijcik McIntosh 10 52
Beauty of Bath 13 15
Priam 4 5
Northern Spy 4 5
Co-op 15 20 4
MN 1702 4 6
WA 2 4 5
WA 5 20 5
Pitmaston Pineapple 4 5
0411-0011 5 7
0411-0017 4 7
0411-0023 4
AE0250-086 5
AE0250-087 4 5
AE0250-089 5
AE0250-090 10 4
AE0250-092 4 5
AE0250-093 10 5
AE0250-094 10 4
AE0250-095 4 5
Sonya 4 5
Co-op 38 11 4
AE0250-096 5 7
AE0250-327 5 7
Co-op 30 4 7
Jonagrimes 2 7
AE0211-036 4 5
G-07-039 11 5
PRI 14-152 4 5
G-07-041 5
BC-8S-27-43 4 5
AE0250-091 5 7
AE0250-097 7
AE0250-325 5 7
AE0250-326 10 7
AE0250-329 10 7
AE0250-333 5 7
AE0250-334 10 7
AE0250-335 5 7
AE0250-336 5 7
AE0250-338 10 7
AE0250-341 7
AE0211-038 4 7
AE0211-043 11 6
AE0211-045 4 7
AE0211-051 11 7
G-07-010 4
G-07-014 4 7
G-07-015 4 7
G-07-019 4
G-07-020 5 7
G-07-024 4
G-07-032 4
G-07-033 4 5
G-07-034 5 7
G-07-035 5 7
G-07-044 4 7
AE0211-053 11 4
AE0211-054 4 6
AE0250-088 10 6
AE0250-324 6 7
AE0250-328 10 6
AE0250-331 10 6
AE0250-332 4 7
AE0250-337 4 7
AE0250-339 10 4
Minnewashta 4 6
Autumn Crisp 4 5
G-14-066 5 7
Lu1-11-010 11 4
Lu1-11-013 4
Lu1-11-016 11 4
Lu1-11-017 4
Lu1-11-018 11 4
NJ 90 11 15
Lord Lambourne 4 7
Antonovka GH 5 7
Grimes Golden 2 4
Kidds Orange Red 4 5
Malus baccata Hansen #2 10 5
Malus baccata Jackii 16
Summerred 4 53
William's Pride 11 5
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-16-5Apple-RosBREED-3.9K-2019166.716.76
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253
GDsnp01588ABBABA--BB---BB---BBABA-ABBBABA-AAB-BBABA--BB-AABBA-
RosBREEDSNP_SNP_CA_1187517_Lg16_01588_MAF10_545103_exon1BBBBBAABBBABBBBB--BBBBBBABBBBBABA-B-BBA--ABBABABBAAB
RosBREEDSNP_SNP_GA_1210107_Lg16_01588_MAF10_521001_exon1--BBABBBBBBBBBBB--BBBBBBBBBB--BBB-AB---BB---ABABABBA
RosBREEDSNP_SNP_GA_1216243_Lg16_01588_MAF20_468133_exon1BBBBABBBBBBBBA----BBBABBBBBA--BBB-ABBBBBBBBAAAABABBA
RosBREEDSNP_SNP_GA_1225178_Lg16_01588_MAF30_278806_exon1BBBBABBBBABBABB---ABBBBBB-ABBA--B-A-ABBBBBBAABAABBAA
RosBREEDSNP_SNP_GA_1312612_Lg16_01600_MAF30_1658756_exon2BAABBB--BBBBBBBBBA----AAA-AA--------BBBABBBBABBBBABB
Alignments
Feature NameTypeLocationAnalysis
Chr16 chromosome Chr16:3003500..3132772. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation