Mdo-HB-16-47

Haplotype Block Overview
Name Mdo-HB-16-47
Species Malus x domestica
Stock Haplotype [view all 419]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 5
Rome Beauty Law 4 5
Jonafree 2 4
Redfree 2 3
Spartan 4 5
Wagener 4 5
Worcester Pearmain 5
Tsugaru 2 5
Golden Delicious 2
Fuji 3 4
Empire 4 5
Gala 2 4
Honeycrisp 3
Elstar 2 3
Marshall McIntosh 2 5
Cripps Pink 2 3
Granny Smith 4 5
Jonathan 4 5
Delicious 4 5
Discovery 27 5
Prima 2 5
821 2 3
Fiesta 5
Ingrid Marie 3 5
Idared 4 5
Esopus Spitzenburg 3 5
Braeburn 5
Sansa 4 5
Lodi 3 5
James Grieve 5
Cripps Red 2 3
Burgundy 3 5
Akane 5
Ambrosia 2 5
Aurora Golden Gala 2 5
Beacon 5
Ben Davis 2 4 5
Cameo 3 4
Chinook 2 4
Clivia 3 5
Co-op 17 5
Co-op 18 2 4
Dayton 2 4 5
Delblush 2
Delcorf 2
Delorgue 2 5
Dolgo 10 3
Geheimrat Dr. Oldenburg 3
Duchess of Oldenburg 3
Early Cortland 3 4 5
Empress 4 5
F2 26829-2-2 2 4
Fantazja 3 5
Fireside 4
Fortune 2 5
Frostbite 3 4
Ginger Gold 2 5
GMAL 4327 2 3
GMAL 4328 2 3
GMAL 4329 2 3
GMAL 4332 2 3
Goodland 3
Haralson 4 5
Honeygold 2 5
Hudson 3 4
Jonamac 5
Keepsake 3
Kerr 3 5
Lady Williams 3 4
Liberty 3 4
Linda 3
Longfield 5
Macoun 2 4
Malinda 5
Melba 3 5
MN 1627 2 3
MN 1628 2 3
MN 1691 3 4
MN 1706 3
MN 1708 3
MN 1760 4 5
MN 1764 4 5
MN 1789 2 4
MN 1802 2 5
MN 1836 3 5
MN 1837 3
MN 1839 3 4
MN 1888 2 4
MN 1899 4 5
MN 1940 4 5
MN 2016 3 5
AA-44 4
Monroe 5
Montgomery 4 5
Nicola 2 5
NJ 31 2
NJ 53 4 5
Oriole 3 5
PRI 14-126 2
PRI 1661-2 4 5
PRI 855-102 4
Primula 2
Raritan 3 5
Regent 2 5
Russian Seedling 2
Sawa 2 3
Sciros 2
Sharon 2 5
Silken 2 4
Wildung 2 4
Splendour 2 5
State Fair 3 5
NJ 55 2 5
Co-op 29 2
Sunrise 2 4
Sweet Sixteen 2 3
Topaz 2 5
Vista Bella 4 5
Wealthy 3 4
Winter Banana 3
Yellow Newtown 3 5
Yellow Transparent 3 5
0407-0001 5
0407-0005 5
0407-0006 2 5
0407-0007 2
0407-0008 2 5
0408-0003 2 4
0408-0004 2 4
0408-0005 2 4
0408-0007 2
0408-0008 2 5
0408-0010 4 5
0408-0011 4 5
0408-0014 2 4
0408-0015 2
0409-0022 3 5
0409-0024 2 3
0409-0028 2 3
0409-0030 2 3
0409-0032 3 5
0409-0035 2 3
0409-0036 2 3
0409-0038 2 3
0409-0039 3 5
0409-0040 3 5
0409-0043 3 5
0409-0045 2 3
0410-0002 2 5
0410-0003 4 5
0410-0005 5
0410-0006 2 4
0410-0010 5
0410-0011 2 4
0410-0012 2 5
0410-0013 5
0410-0015 5
0410-0017 5
0410-0018 2 4
0414-0010 2 3
0414-0015 3 5
0414-0017 3 5
0414-0018 3 4
0414-0019 3 5
0414-0020 2 3
0414-0021 2 3
0415-0001 2 3
0415-0004 3 4
0415-0005 3 4
0415-0011 2 3
0415-0012 3 4
0415-0013 3 4
0415-0014 3 5
0415-0016 2 3
0415-0017 2 3
0415-0019 2 3
0415-0020 2 3
0415-0025 2 3
AE_HCxJonf-145 2 3
AE_HCXJonf-148 2 3
AE_HCxJonf-157 3 4
AE_HCXJonf-162 2 3
AE_HCXJonf-168 3 5
AE_HCxJonf-175 2 3
AE_HCxJonf-183 3 4
AE_HCxJonf-185 3 4
AE0118-237 3 5
AE0118-238 2 3
AE0118-239 3
AE0118-240 2 3
AE0118-243 2 3
AE0118-244 2 3
AE0118-245 2 3
AE0118-246 2 3
AE0118-249 3 5
AE0206-159 3 4
AE0206-160 3 4
AE0206-161 3 5
AE0206-162 4 5
AE0206-163 3 5
AE0206-164 3 4
AE0206-165 4
AE0206-167 4 5
AE0206-168 4 5
AE0206-169 4 5
AE0206-170 4
AE0210-146 3 4
AE0210-147 2 3
AE0210-149 2 4
AE0210-150 2 4
AE0210-151 3 4
AE0210-152 3 4
AE0210-153 2 3
AE0210-154 2 3
AE0210-157 2 4
AE0210-158 2
AE0210-159 2
AE0210-162 2
AE0210-163 2 3
AE0210-164 2 3
AE0210-165 2
AE0210-166 2 4
AE0210-168 2 4
AE0210-169 2 4
AE0210-170 2 3
AE0210-171 3 4
AE0210-172 3 4
AE0210-173 2 4
AE0210-174 2 3
AE0213-175 2
AE0213-176 2
AE0213-177 2 5
AE0213-178 2
AE0213-179 2
AE0213-180 2 3
AE0213-181 2 5
AE0213-182 2
AE0213-183 2
AE0213-186 3 5
AE0213-187 3 5
AE0213-190 3 5
AE0213-193 2 5
AE0213-194 2 5
AE0213-195 2
AE0213-196 2 5
AE0213-197 2
AE0213-198 2 5
AE0213-199 2 5
AE0213-200 2 5
AE0213-201 2 3
AE0213-202 2
AE0213-205 2 5
AE0213-206 3 5
AE0251-323 2 4
AE0251-325 2 4
AE0251-327 3 5
AE0251-329 2 4
AE0251-330 3 4
AE0251-331 2 5
AE0251-342 3 4
AE0251-343 3 4
AE0406-239 3 4
AE0406-254 3 4
AE0406-258 2 3
AE0406-259 2 3
AE0406-263 2 3
AE0406-264 3 4
AE0406-266 2 3
AE0406-271 2 3
AE0406-274 2 3
AE0406-278 2 3
AE0406-281 2 3
AE0406-286 3 4
AE0406-288 3 4
AE0406-289 2 3
AE0406-294 2 3
AE0406-298 2 3
Minneiska 3
NJ 303955 5
PRI 612-1 2 4
Arlet 2 5
Co-op 39 26 7
Pinova 2 3
Scired 4 5
Scifresh 4 5
0409-0025 3 5
0409-0026 2 3
0409-0027 3 5
0409-0031 2 3
0409-0033 3 5
0409-0047 2 3
G-14-050 2 5
G-14-052 3 5
G-14-054 3 5
G-14-055 3 5
G-14-056 3 5
G-14-057 2 5
G-14-059 2 3
G-14-060 3
G-14-061 3 5
G-14-062 3
G-14-064 3
G-14-065 2 5
G-14-069 3
G-14-067 3
G-14-068 2 5
G-14-071 2 3
G-14-073 3 5
G-14-074 2 5
G-14-075 3
G-14-076 3 5
G-14-077 3
G-14-078 2 3
G-14-080 2 3
G-09-232 2 5
G-09-233 5
G-09-234 5
G-09-235 2 5
G-09-236 2 5
G-09-237 5
G-09-238 2 5
G-09-239 5
G-09-240 5
G-09-241 2 5
G-09-242 5
G-09-243 5
G-09-245 5
G-09-246 5
G-09-258 2 5
G-09-259 5
G-09-260 2 5
G-09-261 5
G-09-262 5
G-09-263 5
G-09-264 2 5
G-09-265 2 5
G-09-266 5
G-09-267 2 5
G-09-268 5
0408-0021 2 5
Wijcik McIntosh 26 7
Beauty of Bath 27
Priam 2 5
Northern Spy 2 3
Co-op 15 2 5
MN 1702 4
WA 2 2 4
WA 5 2 5
Pitmaston Pineapple 3
0411-0011 2
0411-0017 2 5
0411-0023 2 5
AE0250-086 2 4
AE0250-087 2 4
AE0250-090 2 5
AE0250-092 3 4
AE0250-093 3 4
AE0250-094 2 4
AE0250-095 2 5
Sonya 4 5
Co-op 38 2 5
AE0250-096 2 3
AE0250-327 2 4
Co-op 30 2 4
AE0211-036 2 5
G-07-039 4 5
G-07-041 3 4
BC-8S-27-43 4 5
AE0250-091 3
AE0250-097 3
AE0250-325 2 3
AE0250-326 3
AE0250-329 2 3
AE0250-333 3
AE0250-334 3
AE0250-335 3
AE0250-336 2 3
AE0250-338 3
AE0250-341 3
AE0211-038 2 3
AE0211-043 2 5
AE0211-045 3 5
AE0211-051 2 5
G-07-010 5
G-07-014 4 5
G-07-015 4 5
G-07-019 5
G-07-020 5
G-07-024 4 5
G-07-032 4 5
G-07-033 4
G-07-034 4 5
G-07-035 4
G-07-044 5
AE0211-053 4 5
AE0211-054 2 4
AE0250-088 3 4
AE0250-324 3 4
AE0250-328 3
AE0250-331 3 4
AE0250-332 3
AE0250-337 3
AE0250-339 3 4
Minnewashta 3 4
Autumn Crisp 2 5
G-14-066 3 5
Lu1-11-010 2 4
Lu1-11-013 2 3
Lu1-11-016 2 3
Lu1-11-017 2 4
Lu1-11-018 2 4
NJ 90 4 5
Lord Lambourne 5
Antonovka GH 3 4
Kidds Orange Red 4 5
Malus baccata Hansen #2 30 31
Malus baccata Jackii 3
Summerred 2 3
William's Pride 3 4
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-16-47Apple-RosBREED-3.9K-20191666.0266.02
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 2345678910111213141516171819202122232425262728293031
RosBREEDSNP_SNP_CA_7286876_Lg17_266160_MAF50_266160_exon1BABAABAB--AB--AA--AA-AABAA--BA
RosBREEDSNP_SNP_CT_670887_Lg8_00175_MAF40_514695_exon1BBBABBAB--ABBABABABBBBABA-BBBB
RosBREEDSNP_SNP_CT_729018_Lg8_01670_MAF30_MDP0000902781_exon1BBABBB--ABBBBBBA---AA--ABBBB--
RosBREEDSNP_SNP_GA_737455_Lg8_01670_MAF50_1635849_exon1BABABAAB-------B--AB----B-ABAB
Alignments
Feature NameTypeLocationAnalysis
Chr16 chromosome Chr16:36651630..36853831. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation