Mdo-HB-16-30a

Haplotype Block Overview
Name Mdo-HB-16-30a
Species Malus x domestica
Stock Haplotype [view all 427]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 15 8
Rome Beauty Law 7 8
Jonafree 14 4
Redfree 4 5
Spartan 8
Wagener 7 8
Worcester Pearmain 4 5
Tsugaru 14 4
Golden Delicious 4 5
Fuji 5 8
Empire 8
Gala 4 8
Honeycrisp 4
Elstar 4 8
Marshall McIntosh 8
Cripps Pink 4 8
Granny Smith 4
Jonathan 14 8
Ralls Janet 5 9
Delicious 4 8
Discovery 4 7
Prima 4 5
821 11 5
Fiesta 14 15
Ingrid Marie 4 8
Idared 14 7
Esopus Spitzenburg 14 8
Braeburn 4 8
Sansa 14 8
Lodi 8
James Grieve 15 7
Cripps Red 4 8
Burgundy 7 8
Akane 14 5
Ambrosia 4
Aurora Golden Gala 4
Beacon 4
Ben Davis 4
Cameo 5 8
Chinook 4 8
Clivia 15 4
Co-op 17 14 8
Co-op 18 16
Dayton 15 4
Delblush 4 5
Delorgue 14 4
Dolgo 3 5
Geheimrat Dr. Oldenburg 4 7
Duchess of Oldenburg 4
Early Cortland 4 8
Empress 14 8
F2 26829-2-2 4 5
Fantazja 8
Fireside 4 8
Fortune 15 5
Frostbite 4 7
Ginger Gold 4 8
GMAL 4327 8
GMAL 4328 4 5
GMAL 4329 5 8
GMAL 4332 8
Goodland 4 8
Honeygold 4 5
Hudson 4 8
Jersey Black 8
Jonamac 14 8
Keepsake 4
Lady Williams 4 8
Liberty 4 8
Linda 4 8
Longfield 4
Macoun 8
Malinda 4
Melba 3 8
Melrose 14 8
MN 1627 4
MN 1628 4 5
MN 1691 4 8
MN 1706 4
MN 1708 4
MN 1760 4 7
MN 1764 4 8
MN 1789 4
MN 1802 4 8
MN 1836 4
MN 1837 4 8
MN 1839 4
MN 1888 4
MN 1899 4
MN 1940 14 4
MN 2016 14 8
AA-44 15 8
Monroe 14 7
Montgomery 4 8
Nicola 4 8
NJ 31 4
NJ 53 15 8
Oriole 4 8
PRI 14-126 4 5
PRI 14-510 5
PRI 1661-2 8
PRI 54-12 4 5
PRI 855-102 14
Primula 4 8
Raritan 14 5
Regent 4 8
Russian Seedling 5 8
Sawa 4 8
Sciros 4
Sharon 8
Silken 4 8
Wildung 4 8
Splendour 4
State Fair 4 8
NJ 55 15 5
Co-op 29 4 8
Sunrise 5 8
Sweet Sixteen 4
Topaz 5 7
Vista Bella 15 8
Wealthy 4 8
Winesap 4
Winter Banana 4 8
Yellow Newtown 5 8
Yellow Transparent 7 8
0407-0001 14 4
0407-0005 14 4
0407-0006 14 4
0407-0007 4 5
0407-0008 14 4
0408-0003 4 8
0408-0004 4 8
0408-0005 4 8
0408-0007 4 8
0408-0008 4 8
0408-0010 4 8
0408-0011 4 8
0408-0014 4 8
0408-0015 4 8
0409-0022 4
0409-0024 4
0409-0028 4
0409-0030 4
0409-0032 4
0409-0035 4
0409-0036 4
0409-0038 4
0409-0039 4
0409-0040 4
0409-0043 4
0409-0045 4
0410-0002 4
0410-0003 4
0410-0005 4
0410-0006 4
0410-0010 4
0410-0011 4
0410-0012 4
0410-0013 4
0410-0015 4
0410-0017 4
0410-0018 4
0414-0010 4 5
0414-0015 14 4
0414-0017 14 4
0414-0018 4 8
0414-0019 14 4
0414-0020 4 8
0414-0021 4 5
0415-0001 4 8
0415-0004 4 8
0415-0005 4 8
0415-0011 4 8
0415-0012 4 8
0415-0013 4 8
0415-0014 14 4
0415-0016 4 8
0415-0017 4 8
0415-0019 4 8
0415-0020 4 8
0415-0025 4 8
AE_HCxJonf-145 4
AE_HCXJonf-148 4
AE_HCxJonf-157 14 4
AE_HCXJonf-162 14 4
AE_HCXJonf-168 4 8
AE_HCxJonf-175 4
AE_HCxJonf-183 14 4
AE_HCxJonf-185 14 4
AE0118-237 4 8
AE0118-238 4 8
AE0118-239 4
AE0118-240 4
AE0118-243 4 8
AE0118-244 4 8
AE0118-245 4
AE0118-246 4 8
AE0118-249 4
AE0206-159 8
AE0206-160 8
AE0206-161 4 8
AE0206-162 4
AE0206-163 4 8
AE0206-164 8
AE0206-165 4 8
AE0206-167 4
AE0206-168 4
AE0206-169 4
AE0206-170 4 8
AE0210-146 5 8
AE0210-147 5 8
AE0210-149 5 8
AE0210-150 5 8
AE0210-151 8
AE0210-152 8
AE0210-153 8
AE0210-154 5 8
AE0210-157 8
AE0210-158 5
AE0210-159 5 8
AE0210-162 5 8
AE0210-163 5 8
AE0210-164 5 8
AE0210-165 5
AE0210-166 5 8
AE0210-168 8
AE0210-169 8
AE0210-170 5 8
AE0210-171 8
AE0210-172 5
AE0210-173 5 8
AE0210-174 5 8
AE0213-175 4 8
AE0213-176 4 8
AE0213-177 8
AE0213-178 4 8
AE0213-179 4 8
AE0213-180 4 8
AE0213-181 8
AE0213-182 4 8
AE0213-183 4 8
AE0213-186 8
AE0213-187 8
AE0213-190 8
AE0213-193 8
AE0213-194 8
AE0213-195 4 8
AE0213-196 8
AE0213-197 4 8
AE0213-198 8
AE0213-199 8
AE0213-200 8
AE0213-201 4 8
AE0213-202 4 8
AE0213-205 4 8
AE0213-206 4 8
AE0251-323 4 8
AE0251-325 4 8
AE0251-327 4 8
AE0251-329 4 8
AE0251-330 4 8
AE0251-331 4
AE0251-342 4 8
AE0251-343 4 8
AE0406-239 4 8
AE0406-254 4 8
AE0406-258 4
AE0406-259 4
AE0406-263 4
AE0406-264 4 8
AE0406-266 4
AE0406-271 4
AE0406-274 4
AE0406-278 4
AE0406-281 4
AE0406-286 4 8
AE0406-288 4 8
AE0406-289 4
AE0406-294 4
AE0406-298 4
Minneiska 4 8
NJ 303955 15
PRI 612-1 4 8
Arlet 14 5
Co-op 39 14 4
Pinova 4 5
Scired 4 8
Scifresh 4 8
0409-0025 4
0409-0026 4
0409-0027 4
0409-0031 4
0409-0033 4
0409-0047 4
G-14-050 14 4
G-14-052 14 4
G-14-054 14 4
G-14-055 14 4
G-14-056 4 5
G-14-057 14 5
G-14-059 14 5
G-14-060 4 5
G-14-061 14 4
G-14-062 4 5
G-14-064 14 4
G-14-065 5
G-14-069 14 4
G-14-067 4 5
G-14-068 5
G-14-071 4 5
G-14-073 14 4
G-14-074 4 5
G-14-075 4 5
G-14-076 14 4
G-14-077 4 5
G-14-078 5
G-14-080 5
G-09-232 4 8
G-09-233 8
G-09-234 4 8
G-09-235 4 8
G-09-236 4 8
G-09-237 4 8
G-09-238 4 8
G-09-239 8
G-09-240 4 8
G-09-241 4 8
G-09-242 8
G-09-243 4 8
G-09-245 8
G-09-246 4 8
G-09-258 4
G-09-259 4 8
G-09-260 4 8
G-09-261 8
G-09-262 4 8
G-09-263 4
G-09-264 4 8
G-09-265 4
G-09-266 4 8
G-09-267 4
G-09-268 8
0408-0021 4 8
Wijcik McIntosh 8
Beauty of Bath 4 7
Priam 14 4
Northern Spy 4 5
Co-op 15 4 8
MN 1702 4 7
WA 2 4 8
WA 5 4 8
Pitmaston Pineapple 7 8
0411-0011 14 8
0411-0017 14 8
0411-0023 14 8
AE0250-086 4 8
AE0250-087 4 8
AE0250-089 4
AE0250-090 4
AE0250-092 4 8
AE0250-093 4 8
AE0250-094 4 8
AE0250-095 4
Sonya 4 8
Co-op 38 4 8
AE0250-096 4 8
AE0250-327 4
Co-op 30 8
Jonagrimes 2 4
AE0211-036 4 8
G-07-039 14 8
PRI 14-152 4
PRI 47-176 14 5
G-07-041 5 8
BC-8S-27-43 4 8
AE0250-091 4 8
AE0250-097 4 8
AE0250-325 4 8
AE0250-326 4 8
AE0250-329 4 8
AE0250-333 4 8
AE0250-334 4 8
AE0250-335 4 8
AE0250-336 4 8
AE0250-338 4 8
AE0250-341 4 8
AE0211-038 4 5
AE0211-043 4 8
AE0211-045 5 8
AE0211-051 5 8
G-07-010 14 4
G-07-014 4 8
G-07-015 14 4
G-07-019 14 4
G-07-020 14 4
G-07-024 4 8
G-07-032 14 4
G-07-033 4 8
G-07-034 4 8
G-07-035 4 8
G-07-044 14 4
AE0211-053 4 8
AE0211-054 4
AE0250-088 4
AE0250-324 4
AE0250-328 4
AE0250-331 4
AE0250-332 4 8
AE0250-337 4 8
AE0250-339 4
Minnewashta 4 8
Autumn Crisp 14 5
G-14-066 4 5
Lu1-11-010 8
Lu1-11-013 5 8
Lu1-11-016 5 8
Lu1-11-017 5 8
Lu1-11-018 5 8
NJ 90 4 8
Lord Lambourne 4 7
Antonovka GH 14 5
Grimes Golden 2 4
Kidds Orange Red 15 8
Malus baccata Hansen #2 14 4
Malus baccata Jackii 15
Summerred 4
William's Pride 4 8
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-16-30aApple-RosBREED-3.9K-20191638.6840.17
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 2345678910111213141516171819202122232425262728
GDsnp01715ABBA-BAB----BBB--A-A-BAA--A
RosBREEDSNP_SNP_AG_12002621_Lg16--AAAAB-AABABA-B-B--AABA--B
RosBREEDSNP_SNP_GA_9158999_Lg16_01730_MAF10_154943_exon1BBBBBABA----BBBBBA-BB--ABAB
RosBREEDSNP_SNP_TG_9105455_Lg16_01730_MAF10_505296_exon1--AAAAA-AB--ABAAAAAAB--A--B
Alignments
Feature NameTypeLocationAnalysis
Chr16 chromosome Chr16:12277724..13091426. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation