Mdo-HB-16-13

Haplotype Block Overview
Name Mdo-HB-16-13
Species Malus x domestica
Stock Haplotype [view all 432]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 14
Rome Beauty Law 3
Jonafree 3
Redfree 10 3
Spartan 10 3
Wagener 14 3
Worcester Pearmain 3 5
Tsugaru 3
Golden Delicious 3
Fuji 10 12
Empire 10 3
Gala 3
Honeycrisp 5 8
Elstar 14 3
Marshall McIntosh 10 3
Cripps Pink 14 3
Granny Smith 13 3
Jonathan 3
Ralls Janet 12 9
Delicious 10 3
Discovery 14 5
Prima 3 4
821 18 19
Fiesta 14 3
Ingrid Marie 14 5
Idared 14 3
Esopus Spitzenburg 3
Braeburn 10 13
Sansa 3
Lodi 14 5
James Grieve 14
Cripps Red 13 3
Burgundy 3 5
Akane 3
Ambrosia 3
Aurora Golden Gala 10 3
Beacon 50 51
Ben Davis 10 13 3
Cameo 3 5
Chinook 3
Clivia 14 5
Co-op 17 3
Co-op 18 3
Dayton 12 3 4
Delblush 3
Delcorf 3
Delorgue 3
Dolgo 10 4
Geheimrat Dr. Oldenburg 14 5
Duchess of Oldenburg 4 5
Early Cortland 3 5
Empress 10 3
F2 26829-2-2 19 3
Fantazja 14 3
Fireside 3
Fortune 14 3
Frostbite 4 8
Ginger Gold 14 3
GMAL 4327 4 5
GMAL 4328 19 4
GMAL 4329 4 5
GMAL 4332 19 5
Goodland 14 5
Haralson 14 4
Honeygold 14 3
Hudson 10 3
Jersey Black 14
Jonamac 3
Keepsake 3 8
Kerr 4
Lady Williams 13 14
Liberty 3 4
Linda 14 3
Liveland Raspberry 14 26
Longfield 82 83
Macoun 14 3
Malinda 12 14
Mantet 14
Melba 10 26
Melrose 10 3
MN 1627 3 5
MN 1628 3 8
MN 1691 3 5
MN 1706 4
MN 1708 5 8
MN 1760 4
MN 1764 3 4
MN 1789 3
MN 1802 14 4
MN 1836 4 8
MN 1837 5
MN 1839 3
MN 1888 3
MN 1899 3
MN 1940 3
MN 2016 3 4
AA-44 3
Monroe 3
Montgomery 10 14
Nicola 10 3
NJ 31 3
NJ 53 12 5
Oriole 14 4
PRI 14-126 3
PRI 14-510 19 3
PRI 1661-2 3
PRI 54-12 19 4
PRI 855-102 3
Primula 10 3
Raritan 76 77
Regent 14 3
Russian Seedling 19
Sawa 14 3
Sciros 3
Sharon 3 5
Silken 10 14
Wildung 3
Splendour 10 3
State Fair 14 4
NJ 55 14 3
Co-op 29 3
Sunrise 10 3
Sweet Sixteen 3 8
Topaz 3 5
Vista Bella 10 12
Wealthy 3 4
Winesap 10
Winter Banana 3
Yellow Newtown 19 80
Yellow Transparent 10 5
0407-0001 3
0407-0005 3
0407-0006 3
0407-0007 10 3
0407-0008 10 3
0408-0003 10 3
0408-0004 10 3
0408-0005 3
0408-0007 3
0408-0008 10 3
0408-0010 10 3
0408-0011 10 3
0408-0014 10 3
0408-0015 10 3
0409-0022 10 5
0409-0024 10 8
0409-0028 3 5
0409-0030 10 8
0409-0032 3 8
0409-0035 3 5
0409-0036 10 5
0409-0038 3 8
0409-0039 3 8
0409-0040 3 5
0409-0043 3 5
0409-0045 10 8
0410-0002 3
0410-0003 10 13
0410-0005 10 13
0410-0006 10 3
0410-0010 3
0410-0011 13 3
0410-0012 10 3
0410-0013 10 3
0410-0015 10 3
0410-0017 3
0410-0018 3
0414-0010 3 8
0414-0015 3 5
0414-0017 3 5
0414-0018 3 5
0414-0019 3 5
0414-0020 3 8
0414-0021 3 8
0415-0001 3 8
0415-0004 3 8
0415-0005 3 8
0415-0011 3 5
0415-0012 3 5
0415-0013 3 8
0415-0014 3 5
0415-0016 3 8
0415-0017 3 8
0415-0019 3 5
0415-0020 3 5
0415-0025 3 8
AE_HCxJonf-145 3 5
AE_HCXJonf-148 3 5
AE_HCxJonf-157 3 5
AE_HCXJonf-162 3 8
AE_HCXJonf-168 10 5
AE_HCxJonf-175 3 8
AE_HCxJonf-183 3 5
AE_HCxJonf-185 3 8
AE0118-237 14 5
AE0118-238 3 8
AE0118-239 3 5
AE0118-240 14 8
AE0118-243 3 8
AE0118-244 3 5
AE0118-245 3 5
AE0118-246 3 5
AE0118-249 3 8
AE0206-159 3 4
AE0206-160 3 4
AE0206-161 10 4
AE0206-162 10 3
AE0206-163 10 3
AE0206-164 10 4
AE0206-165 3
AE0206-167 3
AE0206-168 3 4
AE0206-169 10 3
AE0206-170 3
AE0210-146 3 4
AE0210-147 3 5
AE0210-149 10 4
AE0210-150 3 5
AE0210-151 3 5
AE0210-152 10 4
AE0210-153 10 4
AE0210-154 3 5
AE0210-157 10 4
AE0210-158 3 4
AE0210-159 3 5
AE0210-162 10 4
AE0210-163 3 5
AE0210-164 10 5
AE0210-165 3 4
AE0210-166 10 4
AE0210-168 3 4
AE0210-169 3 4
AE0210-170 3 5
AE0210-171 3 5
AE0210-172 3 4
AE0210-173 10 4
AE0210-174 10 5
AE0213-175 3 5
AE0213-176 3 5
AE0213-177 14 5
AE0213-178 3 5
AE0213-179 19 3
AE0213-180 19 3
AE0213-181 14 5
AE0213-182 19 3
AE0213-183 19 3
AE0213-186 3 5
AE0213-187 19 3
AE0213-190 14 19
AE0213-193 14 19
AE0213-194 14 19
AE0213-195 19 3
AE0213-196 14 19
AE0213-197 14 5
AE0213-198 14 47
AE0213-199 3 5
AE0213-200 3 5
AE0213-201 3 5
AE0213-202 19 3
AE0213-205 3 5
AE0213-206 3 5
AE0251-323 3 8
AE0251-325 3 8
AE0251-327 3
AE0251-329 3
AE0251-330 3 8
AE0251-331 10 8
AE0251-342 3
AE0251-343 3 8
AE0406-239 14 5
AE0406-254 10 5
AE0406-258 10 8
AE0406-259 10 8
AE0406-263 10 5
AE0406-264 10 8
AE0406-266 14 8
AE0406-271 14 8
AE0406-274 14 8
AE0406-278 14 5
AE0406-281 14 8
AE0406-286 14 5
AE0406-288 10 5
AE0406-289 14 8
AE0406-294 14 5
AE0406-298 14 5
Minneiska 4 5
NJ 303955 14
PRI 612-1 3
Arlet 3
Co-op 39 3
Pinova 3 5
Scired 10 3
Scifresh 13 3
0409-0025 3 8
0409-0026 10 8
0409-0027 3 8
0409-0031 3 8
0409-0033 10 8
0409-0047 3 8
G-14-050 3 5
G-14-052 3
G-14-054 3 5
G-14-055 3 5
G-14-056 3 5
G-14-057 3
G-14-059 3 5
G-14-060 12 5
G-14-061 3 5
G-14-062 12 5
G-14-064 12 5
G-14-065 12 3
G-14-069 3 5
G-14-067 12 5
G-14-068 12 5
G-14-071 12 5
G-14-073 3 5
G-14-074 12 5
G-14-075 12 5
G-14-076 3 5
G-14-077 3 5
G-14-078 3 5
G-14-080 12 5
G-09-232 10 14
G-09-233 13 14
G-09-234 10 14
G-09-235 13 3
G-09-236 13 3
G-09-237 13 14
G-09-238 13 3
G-09-239 13 14
G-09-240 10 3
G-09-241 10 14
G-09-242 13 3
G-09-243 10 3
G-09-245 13 3
G-09-246 10 3
G-09-258 10 3
G-09-259 10 14
G-09-260 10 3
G-09-261 13 14
G-09-262 10 14
G-09-263 10 3
G-09-264 10 14
G-09-265 10 3
G-09-266 10 14
G-09-267 10 3
G-09-268 10 14
0408-0021 3
Wijcik McIntosh 10 3
Beauty of Bath 14 63
Priam 3
Northern Spy 3
Co-op 15 3
MN 1702 3 4
WA 2 10 3
WA 5 3
Pitmaston Pineapple 14 3
0411-0011 3
0411-0017 3
0411-0023 3
AE0250-086 3
AE0250-087 10 3
AE0250-089 10 3
AE0250-090 10 8
AE0250-092 10 8
AE0250-093 3 8
AE0250-094 10 8
AE0250-095 10 3
Sonya 10 3
Co-op 38 3
AE0250-096 3 5
AE0250-327 3 5
Co-op 30 3
Jonagrimes 3 5
AE0211-036 14 4
G-07-039 10 3
PRI 14-152 3
PRI 47-176 19 3
G-07-041 12 3
BC-8S-27-43 10 3
AE0250-091 5
AE0250-097 4 5
AE0250-325 5
AE0250-326 4 8
AE0250-329 4 8
AE0250-333 5
AE0250-334 4 8
AE0250-335 5
AE0250-336 5
AE0250-338 4 8
AE0250-341 4 5
AE0211-038 19 3
AE0211-043 14 4
AE0211-045 19 3
AE0211-051 14 19
G-07-010 3
G-07-014 13 3
G-07-015 13 3
G-07-019 3
G-07-020 13 3
G-07-024 3
G-07-032 3
G-07-033 3
G-07-034 13 3
G-07-035 13 3
G-07-044 13 3
AE0211-053 14 3
AE0211-054 3 4
AE0250-088 4 8
AE0250-324 4 5
AE0250-328 4 8
AE0250-331 3 8
AE0250-332 3 5
AE0250-337 3 5
AE0250-339 3 8
Minnewashta 3 4
Autumn Crisp 3
G-14-066 12 5
Lu1-11-010 10
Lu1-11-013 12 3
Lu1-11-016 10
Lu1-11-017 10 3
Lu1-11-018 10
NJ 90 10 3
Lord Lambourne 14 5
Antonovka GH 19 51
Grimes Golden 3
Kidds Orange Red 14 3
Malus baccata Hansen #2 84 85
Malus baccata Jackii 3 8
Summerred 3 86
William's Pride 12 4
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-16-13Apple-RosBREED-3.9K-20191613.4313.43
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374757677787980818283848586
RosBREEDSNP_SNP_AG_3377332_Lg16_00353_MAF50_252327_exon2-ABBBAAAABBBB--AAB--A------ABBA-----BA-BB----AABBB-BB-BA--BABAABAAAB-ABABABABAABBAABB
RosBREEDSNP_SNP_CT_3461705_Lg16_00353_MAF40_166779_exon2BBAAABBBBBBAAABBBBBBBABAABBABBA--BAAAB-BABAABBBAAA-AA-ABBBAAABAABBBBBBBABAABBAABBABAA
RosBREEDSNP_SNP_CT_3465402_Lg16_00353_MAF20_1657982_exon5-BABBBB-B-ABBBB-BB--B-BBBBBBBBBBBBBBBB---BABBA--BAB--B--BBBBBBBBBB--ABBBBAABBBBABABBA
RosBREEDSNP_SNP_GA_3384428_Lg16_00353_MAF50_1674008_exon2BBAAABBBBAAAAABBBA--BABAAB-ABAB-----AB-AABAAABBAAA-AA-ABBBAAABBAB-BAABABBABABABABAABA
RosBREEDSNP_SNP_GA_3434038_Lg16_00353_MAF40_1627013_exon4BBAAABBBBAAAAABBAABABABAABBABBAAA-AA--AAABAAABBAAA-AA-ABBBAB--A--BBAA-ABABABABBAABAB-
RosBREEDSNP_SNP_TC_3430172_Lg16_00353_MAF30_1685436_exon1AABA--BAAAABA--ABA--AAAAAAAAAAAAAAAAAA-AABBAABAABAAAA---AAAAAAAAAAAAABAABABAAAABBAAAB
RosBREEDSNP_SNP_TC_3437104_Lg16_00353_MAF10_495480_exon1-ABBBAA-A-ABAAA-AA--A-ABBAAABAABAABA-----ABAABABAB-BAA--A-AAAABBAAAAA-AABABAABAAABABB
RosBREEDSNP_SNP_TC_3456566_Lg16_00353_MAF20_463076_exon1-AAAAAA-B-AAAAAAAAAA----AAAABBAAAAAAAAAA-AAAAA--AAAAA---B--A--AAAAAAAABAAAAAAABAAAAA-
Alignments
Feature NameTypeLocationAnalysis
Chr16 chromosome Chr16:5427039..5494398. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation