Mdo-HB-15-58

Haplotype Block Overview
Name Mdo-HB-15-58
Species Malus x domestica
Stock Haplotype [view all 425]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 4
Rome Beauty Law 13 6
Jonafree 13
Redfree 23 6
Spartan 4 7
Wagener 4 7
Worcester Pearmain 6
Tsugaru 13 4
Golden Delicious 4
Fuji 4 7
Empire 4 7
Gala 4
Honeycrisp 5 7
Elstar 4
Marshall McIntosh 4
Cripps Pink 4
Granny Smith 4 6
Jonathan 13 4
Ralls Janet 4
Delicious 7 8
Discovery 16 6
Prima 4
821 4
Fiesta 13 4
Ingrid Marie 4
Idared 13 4
Esopus Spitzenburg 4 8
Braeburn 4 7
Sansa 4
Lodi 4
James Grieve 4
Cripps Red 4
Burgundy 13 4
Akane 4 6
Ambrosia 4 7
Aurora Golden Gala 4 7
Beacon 4 5
Ben Davis 4 6
Cameo 4 7
Chinook 4 7
Clivia 4
Co-op 17 13 4
Co-op 18 31
Dayton 13 4
Delblush 4
Delorgue 4
Dolgo 27 7
Geheimrat Dr. Oldenburg 4 5
Duchess of Oldenburg 5
Early Cortland 4
Empress 4
F2 26829-2-2 6
Fantazja 4
Fireside 4 5
Fortune 4
Frostbite 4 6
Ginger Gold 4
GMAL 4327 7 8
GMAL 4328 7 8
GMAL 4329 6 8
GMAL 4332 8
Haralson 4 5
Honeygold 4 5
Hudson 4
Jersey Black 4
Jonamac 4
Keepsake 6 7
Kerr 4 7
Lady Williams 4
Liberty 4 5
Linda 4 7
Longfield 4 5
Macoun 4
Malinda 4 8
Mantet 21 4
Melba 4
Melrose 4 8
MN 1627 4 5
MN 1628 4
MN 1706 18 4
MN 1708 4 6
MN 1760 4 8
MN 1764 4
MN 1789 4 5
MN 1802 4 5
MN 1836 4 6
MN 1837 4 5
MN 1839 4 5
MN 1888 4
MN 1899 4
MN 1940 4 5
MN 2016 4
AA-44 4
Monroe 13 4
Montgomery 4
Nicola 4 7
NJ 31 13
NJ 53 4
Oriole 4
PCF-3-120 4
PRI 14-126 4 6
PRI 14-510 4 6
PRI 1661-2 4 6
PRI 54-12 5 6
PRI 855-102 13
Primula 4
Raritan 23 6
Regent 4
Russian Seedling 7
Sawa 4
Sciros 4
Sharon 4 5
Silken 4 6
Wildung 4 5
Splendour 4 7
State Fair 4 5
NJ 55 4
Co-op 29 4
Sunrise 4 6
Sweet Sixteen 4
Topaz 4 6
Vista Bella 4
Wealthy 4 5
Winesap 4 8
Winter Banana 4
Yellow Newtown 13 7
Yellow Transparent 4 7
0407-0001 13 4
0407-0005 13 7
0407-0006 4
0407-0007 13 4
0407-0008 13 4
0408-0003 4 6
0408-0004 4 6
0408-0005 4 6
0408-0007 4
0408-0008 6 7
0408-0010 4 6
0408-0011 4 7
0408-0014 4 7
0408-0015 6 7
0409-0022 7
0409-0024 7
0409-0028 7
0409-0030 4 7
0409-0032 7
0409-0035 7
0409-0036 7
0409-0038 4 5
0409-0039 5 7
0409-0040 4 5
0409-0043 7
0409-0045 4 7
0410-0002 4
0410-0003 4 6
0410-0005 6 7
0410-0006 6 7
0410-0010 4 6
0410-0011 4 6
0410-0012 4 7
0410-0013 4
0410-0015 6 7
0410-0017 4 7
0410-0018 4 6
0414-0010 13 7
0414-0015 4 7
0414-0017 13 7
0414-0018 5 6
0414-0019 4 5
0414-0020 4 5
0414-0021 13 5
0415-0001 5 6
0415-0004 6 7
0415-0005 4 7
0415-0011 6 7
0415-0012 4 5
0415-0013 6 7
0415-0014 13 7
0415-0016 4 5
0415-0017 4 5
0415-0019 6 7
0415-0020 4 7
0415-0025 4 7
AE_HCxJonf-145 13 7
AE_HCXJonf-148 13 5
AE_HCxJonf-157 13 7
AE_HCXJonf-162 13 7
AE_HCXJonf-168 4 7
AE_HCxJonf-175 13 7
AE_HCxJonf-183 13 7
AE_HCxJonf-185 13 7
AE0118-237 4 7
AE0118-238 4 5
AE0118-239 4 7
AE0118-240 4 5
AE0118-243 4 5
AE0118-244 4 5
AE0118-245 4 5
AE0118-246 4 7
AE0118-249 4 7
AE0206-159 5 7
AE0206-160 5 7
AE0206-161 5 7
AE0206-162 4 5
AE0206-163 4
AE0206-164 4
AE0206-165 4
AE0206-167 5 7
AE0206-168 5 7
AE0206-169 5 7
AE0206-170 5 7
AE0210-146 6
AE0210-147 4 6
AE0210-149 4 6
AE0210-150 6 8
AE0210-151 4 8
AE0210-152 5 6
AE0210-153 6 8
AE0210-154 4 8
AE0210-157 4 8
AE0210-158 4 8
AE0210-159 4 6
AE0210-162 6 8
AE0210-163 4 6
AE0210-164 4 8
AE0210-165 6 8
AE0210-166 4 6
AE0210-168 6
AE0210-169 6
AE0210-170 6 8
AE0210-171 6 8
AE0210-172 4 6
AE0210-173 4 6
AE0210-174 4 6
AE0213-175 4 8
AE0213-176 4 8
AE0213-177 4 8
AE0213-178 4 8
AE0213-179 4 8
AE0213-180 4 8
AE0213-181 4 8
AE0213-182 4 8
AE0213-183 4 8
AE0213-186 4 8
AE0213-187 4 8
AE0213-190 4 8
AE0213-193 4 8
AE0213-194 4 8
AE0213-195 4 8
AE0213-196 4 8
AE0213-197 4 8
AE0213-198 4 6
AE0213-199 4 8
AE0213-200 4 8
AE0213-201 4 8
AE0213-202 4 8
AE0213-205 4 8
AE0213-206 4 8
AE0251-323 4 7
AE0251-325 4 7
AE0251-327 4 7
AE0251-329 4
AE0251-330 4 7
AE0251-331 4
AE0251-342 4
AE0251-343 4
AE0406-239 4 5
AE0406-254 5 6
AE0406-258 5 6
AE0406-259 5 6
AE0406-263 4 7
AE0406-264 5 6
AE0406-266 4 7
AE0406-271 5 7
AE0406-274 4 5
AE0406-278 5 6
AE0406-281 4 7
AE0406-286 4 7
AE0406-288 5 6
AE0406-289 5 6
AE0406-294 4 5
AE0406-298 5 6
Minneiska 5 7
NJ 303955 4
PRI 612-1 6 7
Arlet 13 4
Co-op 39 4
Pinova 4
Scired 4
Scifresh 4
0409-0025 5 7
0409-0026 4 7
0409-0027 4 5
0409-0031 7
0409-0033 7
0409-0047 7
G-14-050 4
G-14-052 4
G-14-054 4
G-14-055 4
G-14-056 4
G-14-057 4
G-14-059 4
G-14-060 4
G-14-061 4
G-14-062 4
G-14-064 4
G-14-065 4
G-14-069 4
G-14-067 4
G-14-068 4
G-14-071 4
G-14-073 4
G-14-074 4
G-14-075 4
G-14-076 4
G-14-077 4
G-14-078 4
G-14-080 4
G-09-232 4
G-09-233 4 7
G-09-234 4
G-09-235 4
G-09-236 4 7
G-09-237 4 7
G-09-238 4
G-09-239 4
G-09-240 4 7
G-09-241 4
G-09-242 4
G-09-243 4 7
G-09-245 4
G-09-246 4
G-09-258 4 7
G-09-259 4 7
G-09-260 4 7
G-09-261 4 7
G-09-262 4
G-09-263 4
G-09-264 4
G-09-265 4
G-09-266 4 7
G-09-267 4 7
G-09-268 4
0408-0021 4
Wijcik McIntosh 4
Beauty of Bath 16
Priam 4
Northern Spy 4 7
Co-op 15 6
MN 1702 4
WA 2 4 7
WA 5 4 6
Pitmaston Pineapple 7 8
0411-0011 4
0411-0017 13 6
AE0250-086 4 7
AE0250-087 4
AE0250-089 4
AE0250-090 4
AE0250-092 4
AE0250-093 4
AE0250-094 4 7
AE0250-095 4 7
Sonya 4 7
Co-op 38 13 4
AE0250-096 13 4
AE0250-327 13 4
Co-op 30 4 6
Jonagrimes 3 5
AE0211-036 4 6
G-07-039 4
PRI 14-152 4 6
G-07-041 4
BC-8S-27-43 4 7
AE0250-097 7
AE0250-325 5 8
AE0250-326 7
AE0250-329 7 8
AE0250-333 5 8
AE0250-334 5 8
AE0250-335 5 7
AE0250-336 7
AE0250-338 7
AE0250-341 7
AE0211-038 4 8
AE0211-043 4 7
AE0211-045 4 8
AE0211-051 4 8
G-07-010 4
G-07-014 4
G-07-015 4
G-07-019 4
G-07-020 4
G-07-024 4 6
G-07-032 4
G-07-033 4 6
G-07-034 4
G-07-035 4 6
G-07-044 4 6
AE0211-053 4
AE0211-054 4
AE0250-088 4 7
AE0250-328 5 7
AE0250-331 4 5
AE0250-332 5 7
AE0250-337 4 5
AE0250-339 5 7
Minnewashta 4 5
Autumn Crisp 4
G-14-066 4
Lu1-11-010 4 7
Lu1-11-013 4
Lu1-11-016 4 7
Lu1-11-017 4 7
Lu1-11-018 4
NJ 90 4
Lord Lambourne 4 6
Antonovka GH 4 7
Grimes Golden 3 4
Kidds Orange Red 4 8
Malus baccata Hansen #2 4
Malus baccata Jackii 6
Summerred 4
William's Pride 4
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-15-58Apple-RosBREED-3.9K-20191596.3597.44
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 23456789101112131415161718192021222324252627282930313233343536
RosBREEDSNP_SNP_CT_46676692_Lg15_01752_MAF20_MDP0000260867_exon6--BBBBBAB--ABBBABAB--BBBBBBAB---ABA
RosBREEDSNP_SNP_CT_46723348_Lg15_01752_MAF10_MDP0000578301_exon1--BABBBBBBBBBABBABB--AAB-----BB-A-B
RosBREEDSNP_SNP_GT_46673952_Lg15_01752_MAF30_371896_exon1BABAABABAABBBA--A----B--BA--BBABA-A
RosBREEDSNP_SNP_TC_49247422_Lg15_01707_MAF30_509521_exon1--AAABB----A--AAB--BAAABBA--AAAAAAB
Alignments
Feature NameTypeLocationAnalysis
Chr15 chromosome Chr15:28041044..49920451. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation