Mdo-HB-15-28

Haplotype Block Overview
Name Mdo-HB-15-28
Species Malus x domestica
Stock Haplotype [view all 428]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 5 7
Rome Beauty Law 4 5
Jonafree 5
Redfree 10 5
Spartan 4 7
Wagener 10 7
Worcester Pearmain 10
Tsugaru 4 7
Golden Delicious 4 5
Fuji 4 7
Empire 4 5
Gala 5 7
Honeycrisp 10 5
Elstar 4 5
Marshall McIntosh 4
Cripps Pink 4 5
Granny Smith 5
Jonathan 10 7
Ralls Janet 3 4
Delicious 5 7
Discovery 10 7
Prima 5
821 6
Fiesta 10 5
Ingrid Marie 5
Idared 10
Esopus Spitzenburg 5 7
Braeburn 5
Sansa 7
Lodi 6
James Grieve 7
Cripps Red 4
Burgundy 10
Akane 10 7
Ambrosia 4 5
Aurora Golden Gala 5
Beacon 10 7
Ben Davis 4 7
Cameo 4 5
Clivia 5 7
Co-op 17 5 7
Co-op 18 5
Dayton 4 5 7
Delblush 4 7
Delorgue 10 5
Dolgo 6 7
Geheimrat Dr. Oldenburg 4 7
Duchess of Oldenburg 6 7
Early Cortland 4 6 7
Empress 4 7
F2 26829-2-2 5
Fantazja 4 7
Fireside 10 7
Fortune 5
Frostbite 10
Ginger Gold 4 6
GMAL 4327 4 6
GMAL 4328 4 6
GMAL 4329 10 6
GMAL 4332 10 6
Goodland 6 7
Haralson 4 7
Honeygold 4
Hudson 4 5
Jersey Black 4
Jonamac 4 7
Keepsake 10 5
Kerr 4 6
Lady Williams 4 5
Liberty 4 6
Linda 7
Liveland Raspberry 10 4
Longfield 4 6
Macoun 4
Malinda 10 4
Mantet 7 9
Melba 4
MN 1627 5 7
MN 1628 10 5
MN 1691 7
MN 1706 14 4
MN 1708 10 7
MN 1760 10 5
MN 1764 5 7
MN 1789 7
MN 1802 5 7
MN 1836 10 7
MN 1837 5 7
MN 1839 10 5
MN 1888 7
MN 1899 7
MN 1940 4 7
MN 2016 4 7
AA-44 10 5
Monroe 10 4
Montgomery 10 6
Nicola 5
NJ 31 5
NJ 53 10 4
Oriole 10 6
PRI 14-126 5
PRI 14-510 5
PRI 16-144 5
PRI 1661-2 4 5
PRI 54-12 5 6
PRI 855-102 5
Primula 4 5
Raritan 4 5
Regent 4 7
Russian Seedling 14
Sawa 5 7
Sciros 5 7
Sharon 4
Silken 4 5
Wildung 10 4
Splendour 5
State Fair 4 7
NJ 55 4 7
Co-op 29 4 5
Sunrise 4 5
Sweet Sixteen 10 5
Topaz 5 7
Vista Bella 4
Wealthy 6 7
Winesap 5 7
Winter Banana 4 5
Yellow Newtown 4 5
Yellow Transparent 6 7
0407-0001 10 5
0407-0005 4 5
0407-0006 4 5
0407-0007 10 5
0407-0008 10 5
0408-0003 4 5
0408-0004 5
0408-0005 5
0408-0007 5
0408-0008 4 5
0408-0010 4 5
0408-0011 5
0408-0014 4 5
0408-0015 5
0409-0022 10 5
0409-0024 5
0409-0028 10 5
0409-0030 10 5
0409-0032 5
0409-0035 10 5
0409-0036 5
0409-0038 10 5
0409-0039 10 5
0409-0040 5
0409-0043 5
0409-0045 5
0410-0002 5
0410-0003 5
0410-0005 5
0410-0006 5
0410-0010 5
0410-0011 5
0410-0012 5
0410-0013 5
0410-0015 5
0410-0017 5
0410-0018 5
0414-0010 10
0414-0015 4 5
0414-0017 4 5
0414-0018 5
0414-0019 4 5
0414-0020 4 5
0414-0021 4 5
0415-0001 10 5
0415-0004 5
0415-0005 10 5
0415-0011 5
0415-0012 10 5
0415-0013 10 4
0415-0014 10 5
0415-0016 10 5
0415-0017 10 4
0415-0019 10 4
0415-0020 5
0415-0025 10 5
AE_HCxJonf-145 5
AE_HCXJonf-148 10 5
AE_HCxJonf-157 5
AE_HCXJonf-162 5
AE_HCXJonf-168 4 5
AE_HCxJonf-175 5
AE_HCxJonf-183 5
AE_HCxJonf-185 10 5
AE0118-237 10 7
AE0118-238 10 7
AE0118-239 10
AE0118-240 5 7
AE0118-243 10 7
AE0118-244 4 5
AE0118-245 5 7
AE0118-246 5 7
AE0118-249 4 5
AE0206-159 5 7
AE0206-160 5 7
AE0206-161 4 5
AE0206-162 5 7
AE0206-163 4 5
AE0206-164 4 5
AE0206-165 4 5
AE0206-167 5 7
AE0206-168 4 5
AE0206-169 4 5
AE0206-170 5 7
AE0210-146 10 5
AE0210-147 4 6
AE0210-149 5 6
AE0210-150 10 4
AE0210-151 5 6
AE0210-152 4 5
AE0210-153 10 5
AE0210-154 4 6
AE0210-157 5 6
AE0210-158 5 6
AE0210-159 10 5
AE0210-162 10 4
AE0210-163 10 4
AE0210-164 4 6
AE0210-165 4 6
AE0210-166 10 4
AE0210-168 5 6
AE0210-169 5 6
AE0210-170 4 6
AE0210-171 4 6
AE0210-172 5 6
AE0210-173 5 6
AE0210-174 10 4
AE0213-175 10 4
AE0213-176 6
AE0213-177 6
AE0213-178 10 4
AE0213-179 10 6
AE0213-180 6
AE0213-181 6
AE0213-182 4 6
AE0213-183 10 6
AE0213-186 6
AE0213-187 6
AE0213-190 10 6
AE0213-193 4 6
AE0213-194 4 6
AE0213-195 6
AE0213-196 10 4
AE0213-197 10 6
AE0213-198 10 6
AE0213-199 6
AE0213-200 10 4
AE0213-201 4 6
AE0213-202 4 6
AE0213-205 6
AE0213-206 10 6
AE0251-323 10 5
AE0251-325 10 5
AE0251-327 10 5
AE0251-329 10 5
AE0251-330 5
AE0251-331 5
AE0251-342 10 5
AE0251-343 5
AE0406-239 4 5
AE0406-254 4 5
AE0406-258 5
AE0406-259 5
AE0406-263 5
AE0406-264 4 5
AE0406-266 10 4
AE0406-271 10 4
AE0406-274 5
AE0406-278 4 5
AE0406-281 10 4
AE0406-286 4 5
AE0406-288 10 4
AE0406-289 10 5
AE0406-294 10 4
AE0406-298 5
Minneiska 4 5
NJ 303955 7
PRI 612-1 5
Arlet 10 4
Co-op 39 7
Pinova 5 7
Scired 5 7
Scifresh 5
0409-0025 5
0409-0026 10 5
0409-0027 5
0409-0031 5
0409-0033 10 5
0409-0047 5
G-14-050 4 7
G-14-052 4 5
G-14-054 4 7
G-14-055 4 7
G-14-056 4 5
G-14-057 4 5
G-14-059 4 7
G-14-060 4 5
G-14-061 7
G-14-062 4 7
G-14-064 4 5
G-14-065 4 5
G-14-069 7
G-14-067 7
G-14-068 4 5
G-14-071 5 7
G-14-073 4 5
G-14-074 7
G-14-075 5 7
G-14-076 4 7
G-14-077 5 7
G-14-078 7
G-14-080 5 7
G-09-232 5 6
G-09-233 5 6
G-09-234 4 5
G-09-235 4 5
G-09-236 4 5
G-09-237 4 5
G-09-238 5 6
G-09-239 5 6
G-09-240 5 6
G-09-241 4 5
G-09-242 5 6
G-09-243 4 5
G-09-245 5 6
G-09-246 4 5
G-09-258 4 5
G-09-259 4 5
G-09-260 4 5
G-09-261 5 6
G-09-262 5 6
G-09-263 4 5
G-09-264 4 5
G-09-265 5 6
G-09-266 5 6
G-09-267 4 5
G-09-268 5 6
0408-0021 4 5
Wijcik McIntosh 4
Beauty of Bath 21 7
Priam 5 7
Northern Spy 5
Co-op 15 5
MN 1702 10 7
WA 2 5
WA 5 5
Pitmaston Pineapple 10 5
0411-0011 10 4
0411-0017 4 5
0411-0023 10 5
AE0250-086 5
AE0250-087 10 5
AE0250-089 10 5
AE0250-090 5
AE0250-092 10 5
AE0250-093 5
AE0250-094 5
AE0250-095 10 5
Sonya 5
Co-op 38 5 7
AE0250-096 5 7
AE0250-327 7
Co-op 30 4 5
Jonagrimes 3 7
AE0211-036 6
G-07-039 7
PRI 14-152 4 5
PRI 47-176 5 7
G-07-041 7
BC-8S-27-43 5
AE0250-091 5 6
AE0250-097 10 6
AE0250-325 4 5
AE0250-326 10 4
AE0250-329 10 4
AE0250-333 5 6
AE0250-334 4 5
AE0250-335 5 6
AE0250-336 4 5
AE0250-338 5 6
AE0250-341 10 4
AE0211-045 4
AE0211-051 4
G-07-010 5 7
G-07-014 5 7
G-07-015 5 7
G-07-019 5 7
G-07-020 5 7
G-07-024 5 7
G-07-032 5 7
G-07-033 5 7
G-07-034 5 7
G-07-035 5 7
G-07-044 5 7
AE0211-053 4 6
AE0211-054 4
AE0250-088 5 7
AE0250-324 10 4
AE0250-328 4 5
AE0250-331 5 7
AE0250-332 4 5
AE0250-337 10 7
AE0250-339 10 4
Minnewashta 4 7
Autumn Crisp 4 5
G-14-066 5 7
Lu1-11-010 4 7
Lu1-11-013 4
Lu1-11-016 7
Lu1-11-017 4 7
Lu1-11-018 4
NJ 90 4
Lord Lambourne 10 7
Antonovka GH 10 7
Grimes Golden 3 4
Kidds Orange Red 7
Malus baccata Hansen #2 14 7
Malus baccata Jackii 6
Summerred 7
William's Pride 10 5
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-15-28Apple-RosBREED-3.9K-20191542.9843.14
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 234567891011121314151617181920212223
GDsnp01146AAABAB--AABBBB-A---ABB
RosBREEDSNP_SNP_AG_12562594_Lg15_01146_MAF10_MDP0000451698_exon2--AABAAAAA--BABB--A--B
RosBREEDSNP_SNP_GT_12572371_Lg15_01146_MAF30_MDP0000248968_exon1BABBBAABA-BAB-B-AB---A
Alignments
Feature NameTypeLocationAnalysis
Chr15 chromosome Chr15:14784428..14818633. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation