Mdo-HB-15-21

Haplotype Block Overview
Name Mdo-HB-15-21
Species Malus x domestica
Stock Haplotype [view all 427]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 5 9
Rome Beauty Law 4 9
Jonafree 9
Redfree 6 9
Spartan 14 5
Wagener 5 6
Worcester Pearmain 34 6
Tsugaru 5 9
Golden Delicious 4 5
Fuji 5
Empire 6 9
Gala 5
Honeycrisp 5 6
Elstar 5
Marshall McIntosh 14 6
Cripps Pink 4 9
Granny Smith 5 9
Jonathan 4 9
Ralls Janet 11 5
Delicious 5 9
Discovery 6
Prima 5 9
821 17
Fiesta 4 5
Ingrid Marie 5 9
Idared 4 6
Esopus Spitzenburg 5 9
Braeburn 5
Sansa 5 9
Lodi 4 5
James Grieve 9
Cripps Red 4
Burgundy 23 4
Akane 6 9
Ambrosia 4 5
Aurora Golden Gala 5
Beacon 6
Ben Davis 4 5
Cameo 4 9
Chinook 5
Clivia 5 6
Co-op 17 4 5
Co-op 18 9
Dayton 5 6 9
Delblush 4 5
Delorgue 4 6
Dolgo 11 38
Geheimrat Dr. Oldenburg 4 6
Duchess of Oldenburg 6
Early Cortland 5 6
Empress 6 9
F2 26829-2-2 9
Fantazja 6 9
Fireside 5 9
Fortune 4 9
Frostbite 6 9
Ginger Gold 4 5
GMAL 4327 4 6
GMAL 4328 4 9
GMAL 4329 4 6
GMAL 4332 4 6
Goodland 33 6
Haralson 4 6
Honeygold 4
Hudson 6 9
Jersey Black 11 4
Jonamac 14 9
Keepsake 6 9
Kerr 38 4
Lady Williams 4 9
Liberty 14 6
Linda 6 9
Longfield 4
Macoun 14 4
Malinda 4 6
Melba 6 9
MN 1627 5 6
MN 1628 9
MN 1691 33 9
MN 1706 6 9
MN 1708 6
MN 1760 9
MN 1764 9
MN 1789 6 9
MN 1802 9
MN 1836 9
MN 1837 33 5
MN 1839 5
MN 1888 33 6
MN 1899 6 9
MN 1940 4 9
MN 2016 33 6
AA-44 4 9
Monroe 4
Montgomery 5 6
Nicola 5
NJ 31 9
NJ 53 4 6
Oriole 6 9
PRI 14-126 5 9
PRI 14-510 5 9
PRI 16-144 9
PRI 1661-2 6 9
PRI 54-12 6 9
PRI 855-102 9
Primula 5 6
Raritan 9
Regent 14 6
Russian Seedling 6
Sawa 5 9
Sciros 5
Sharon 4 6
Silken 4 6
Wildung 5 6
Splendour 5
State Fair 4 9
NJ 55 4 9
Co-op 29 4 9
Sunrise 5 6
Sweet Sixteen 9
Topaz 5 9
Vista Bella 6 9
Wealthy 6 9
Winesap 5 6
Winter Banana 25 6
Yellow Newtown 48 50
Yellow Transparent 4 6
0407-0001 5 6
0407-0005 4 5
0407-0006 4 5
0407-0007 5 6
0407-0008 5 6
0408-0003 5 9
0408-0004 5 9
0408-0005 5 9
0408-0007 5 9
0408-0008 5 6
0408-0010 5 9
0408-0011 5 9
0408-0014 5 6
0408-0015 5 9
0409-0022 5 6
0409-0024 5
0409-0028 5 6
0409-0030 5 6
0409-0032 5
0409-0035 5 6
0409-0036 5
0409-0038 5 6
0409-0039 5 6
0409-0040 5
0409-0043 5
0409-0045 5
0410-0002 5
0410-0003 5 9
0410-0005 5 9
0410-0006 5
0410-0010 5 9
0410-0011 5
0410-0012 5 9
0410-0013 5 9
0410-0015 5 9
0410-0017 5 9
0410-0018 5
0414-0010 6
0414-0015 4 5
0414-0017 4 5
0414-0018 5 9
0414-0019 4 5
0414-0020 5 6
0414-0021 4 5
0415-0001 6 9
0415-0004 5 6
0415-0005 5 9
0415-0011 5 9
0415-0012 6 9
0415-0013 6
0415-0014 4 6
0415-0016 6 9
0415-0017 6
0415-0019 6
0415-0020 5 9
0415-0025 6 9
AE_HCxJonf-145 5 9
AE_HCXJonf-148 6 9
AE_HCxJonf-157 5 9
AE_HCXJonf-162 5 9
AE_HCXJonf-168 5
AE_HCxJonf-175 5 9
AE_HCxJonf-183 5 9
AE_HCxJonf-185 6 9
AE0118-237 6
AE0118-238 6
AE0118-239 5 6
AE0118-240 5 6
AE0118-243 5 6
AE0118-244 14 5
AE0118-245 6
AE0118-246 5 6
AE0118-249 14 5
AE0206-159 33 5
AE0206-160 33 5
AE0206-161 4 5
AE0206-162 33 5
AE0206-163 4 5
AE0206-164 4 5
AE0206-165 4 5
AE0206-167 33 5
AE0206-168 4 5
AE0206-169 4 5
AE0206-170 33 5
AE0210-146 4 5
AE0210-147 4 6
AE0210-149 4 5
AE0210-150 6
AE0210-151 5 6
AE0210-152 4 5
AE0210-153 5 6
AE0210-154 4 6
AE0210-157 4 5
AE0210-158 4 5
AE0210-159 5 6
AE0210-162 6
AE0210-163 6
AE0210-164 6
AE0210-165 4 6
AE0210-166 6
AE0210-168 4 5
AE0210-169 4 5
AE0210-170 4 6
AE0210-171 4 6
AE0210-172 4 5
AE0210-173 4 6
AE0210-174 6
AE0213-175 4 6
AE0213-176 4 5
AE0213-177 4 5
AE0213-178 4 6
AE0213-179 5 6
AE0213-180 4 5
AE0213-181 4 5
AE0213-182 4
AE0213-183 5 6
AE0213-186 5 6
AE0213-187 4 5
AE0213-190 5 6
AE0213-193 4
AE0213-194 4
AE0213-195 4 5
AE0213-196 4 6
AE0213-197 4 5
AE0213-198 5
AE0213-199 4 5
AE0213-200 4 6
AE0213-201 4
AE0213-205 4 5
AE0213-206 5 6
AE0251-323 5 9
AE0251-325 5 9
AE0251-327 5 9
AE0251-329 5 9
AE0251-330 5 9
AE0251-331 5 9
AE0251-342 5 9
AE0251-343 5 9
AE0406-239 4 5
AE0406-254 4 5
AE0406-258 4 5
AE0406-259 4 5
AE0406-263 5 6
AE0406-264 4 6
AE0406-266 4 6
AE0406-271 4 6
AE0406-274 6
AE0406-278 4 5
AE0406-281 4 5
AE0406-286 4 5
AE0406-288 4 6
AE0406-289 6
AE0406-294 4 6
AE0406-298 5 6
Minneiska 4 5
NJ 303955 9
PRI 612-1 5 9
Arlet 4 6
Co-op 39 38 41
Pinova 4 6
Scired 5
Scifresh 5
0409-0025 5
0409-0026 5 6
0409-0027 5 6
0409-0031 5
0409-0033 5 6
0409-0047 5
G-14-050 4 6
G-14-052 4
G-14-054 4 6
G-14-055 4 6
G-14-056 4
G-14-057 4
G-14-059 4 6
G-14-060 4
G-14-061 5 6
G-14-062 4 6
G-14-064 4
G-14-065 4
G-14-069 5 6
G-14-067 5 6
G-14-068 4 6
G-14-073 4
G-14-074 5 6
G-14-075 4 5
G-14-076 5 6
G-14-077 4
G-14-078 5 6
G-14-080 4
G-09-232 5
G-09-233 5
G-09-234 4 5
G-09-235 4 5
G-09-236 4 5
G-09-237 4 5
G-09-238 4 5
G-09-239 5
G-09-240 5
G-09-241 4 5
G-09-242 5
G-09-243 4 5
G-09-245 5
G-09-246 4 5
G-09-258 4 5
G-09-259 4 5
G-09-260 4 5
G-09-261 5
G-09-262 5
G-09-263 4 5
G-09-264 4 5
G-09-265 5
G-09-266 5
G-09-267 4 5
G-09-268 5
0408-0021 5 6
Wijcik McIntosh 14 6
Beauty of Bath 25 6
Priam 5 9
Northern Spy 9
Co-op 15 5 9
MN 1702 9
WA 2 5
WA 5 5 9
Pitmaston Pineapple 5 6
0411-0011 6
0411-0017 4 9
0411-0023 4 9
AE0250-086 5 9
AE0250-087 5 9
AE0250-089 5 9
AE0250-090 5 9
AE0250-092 5 9
AE0250-093 5 9
AE0250-094 5 9
AE0250-095 5 9
Sonya 5
Co-op 38 4 5
AE0250-096 5 9
AE0250-327 9
Co-op 30 6 9
Jonagrimes 3 6
AE0211-036 4 5
G-07-039 6 9
PRI 14-152 4 9
PRI 47-176 9
G-07-041 5 9
BC-8S-27-43 5
AE0250-091 4 5
AE0250-097 6
AE0250-325 4 5
AE0250-326 4 6
AE0250-329 4 6
AE0250-333 5 6
AE0250-334 4 5
AE0250-335 4 5
AE0250-336 4 5
AE0250-338 5 6
AE0250-341 4 6
AE0211-038 4
AE0211-043 4
AE0211-045 4 9
AE0211-051 4
G-07-010 5 9
G-07-014 5 9
G-07-015 5
G-07-019 9
G-07-020 5
G-07-024 5
G-07-032 9
G-07-033 5 9
G-07-034 5 9
G-07-035 5 9
G-07-044 9
AE0211-053 4 5
AE0211-054 4
AE0250-088 33 5
AE0250-324 33 6
AE0250-328 4 5
AE0250-331 33 5
AE0250-332 4 5
AE0250-337 33 6
AE0250-339 4 5
Minnewashta 33 4
Autumn Crisp 4 5
G-14-066 4 5
Lu1-11-010 5 9
Lu1-11-013 14 5
Lu1-11-016 5 9
Lu1-11-017 14 5
Lu1-11-018 14 5
NJ 90 14 9
Lord Lambourne 6 9
Antonovka GH 51 52
Grimes Golden 3 4
Kidds Orange Red 5 9
Malus baccata Hansen #2 46 54
Malus baccata Jackii 15
Summerred 5 6
William's Pride 4 9
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-15-21Apple-RosBREED-3.9K-20191534.0434.3
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 23456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354
GDsnp00389--BAAAAA--ABAB----ABBAAABAA--ABA--BAB--AABBBAAABBBAAB
GDsnp00796BBBABBABABBBBBBB--ABBBAABABAB--BAB--BBBBBABABBBBABB-B
RosBREEDSNP_SNP_AG_8248084_Lg15_00796_MAF30_1680748_exon1BABAA--AAA--BA------BAAABAA--ABBAABAABABAAABABBBABAAA
RosBREEDSNP_SNP_CT_8352817_Lg15_226490__226490_exon1BABAA--AAA--BA----AB---ABAB--ABBABBAB--AAAAA--AABABA-
RosBREEDSNP_SNP_GA_8129810_Lg15_00389_MAF40_1641199_exon1BABBBBBABBABBBABBABBBABA--AB-BBAAB--BBAA-BABBBBBBABAB
Alignments
Feature NameTypeLocationAnalysis
Chr15 chromosome Chr15:10673727..11556336. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation