Mdo-HB-15-2

Haplotype Block Overview
Name Mdo-HB-15-2
Species Malus x domestica
Stock Haplotype [view all 418]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 2 20
Rome Beauty Law 2
Jonafree 2 3
Redfree 2
Spartan 3 4
Wagener 2
Worcester Pearmain 3 4
Tsugaru 2
Golden Delicious 2
Fuji 3 4
Empire 3 4
Gala 2
Honeycrisp 2 3
Elstar 2 20
Marshall McIntosh 3
Cripps Pink 2
Granny Smith 2
Jonathan 2
Delicious 4
Prima 2
821 6
Fiesta 2
Ingrid Marie 20 4
Idared 2
Esopus Spitzenburg 2 3
Braeburn 2 4
Sansa 2
Lodi 17 3
James Grieve 2 4
Cripps Red 2 3
Burgundy 2 3
Akane 2 4
Ambrosia 2 4
Aurora Golden Gala 2 4
Beacon 20 3
Ben Davis 2 3
Cameo 2 4
Chinook 2 4
Clivia 20 3
Co-op 17 2 4
Co-op 18 20 33
Dayton 2 4
Delblush 2 3
Delorgue 2 4
Dolgo 23 6
Geheimrat Dr. Oldenburg 2 3
Duchess of Oldenburg 3
Early Cortland 17 3
Empress 20 3
F2 26829-2-2 2 6
Fantazja 3
Fireside 20 3
Fortune 2 20
Frostbite 2 3
Ginger Gold 2 3
GMAL 4327 20 3
GMAL 4328 20
GMAL 4329 20 3
GMAL 4332 20
Goodland 2 3
Haralson 3
Honeygold 2 3
Hudson 2 3
Jonamac 2 3
Keepsake 2 3
Kerr 3 6
Lady Williams 2 3
Liberty 3
Linda 3
Longfield 3
Macoun 3
Malinda 20 3
Mantet 2
Melba 3
Melrose 2 4
MN 1627 2 3
MN 1691 2 3
MN 1706 3
MN 1708 2 3
MN 1760 3
MN 1764 2 3
MN 1789 2 3
MN 1802 2 3
MN 1836 2
MN 1837 3
MN 1839 2 3
MN 1888 2 3
MN 1899 3
MN 1940 2 3
MN 2016 2
AA-44 2 20
Monroe 2
Montgomery 17 3
Nicola 2 4
NJ 31 2 3
NJ 53 20 33
Oriole 3
PCF-3-120 2 3
PRI 14-126 2 6
PRI 1661-2 3 6
PRI 855-102 2
Primula 3 6
Raritan 46 47
Regent 3
Russian Seedling 48 49
Sawa 3 6
Sciros 2 4
Sharon 3 4
Silken 2
Wildung 20 3
Splendour 2 4
State Fair 2 3
NJ 55 2
Co-op 29 2 6
Sunrise 2
Topaz 2 3
Vista Bella 2 20
Wealthy 2 3
Winesap 3 4
Winter Banana 20
Yellow Newtown 3
Yellow Transparent 17 53
0407-0001 2 4
0407-0005 2 4
0407-0006 2 4
0407-0007 2 4
0407-0008 2
0408-0003 3 4
0408-0004 2 3
0408-0005 2 3
0408-0007 4
0408-0008 3 4
0408-0010 2 4
0408-0011 4
0408-0014 2 3
0408-0015 2 3
0409-0022 2 4
0409-0024 2 3
0409-0028 3 4
0409-0030 2 3
0409-0032 2
0409-0035 2 3
0409-0036 2
0409-0038 2
0409-0039 2 4
0409-0040 2 4
0409-0043 2
0409-0045 2 3
0410-0002 2 4
0410-0003 2
0410-0005 2
0410-0006 2
0410-0010 2 4
0410-0011 2 4
0410-0012 2 4
0410-0013 2
0410-0015 2 4
0410-0017 2 4
0410-0018 2
0414-0010 2 3
0414-0015 2
0414-0017 2 3
0414-0018 2 4
0414-0019 2
0414-0020 2 3
0414-0021 2
0415-0001 3
0415-0004 3
0415-0005 2 4
0415-0011 2 4
0415-0012 3 4
0415-0013 3
0415-0014 2
0415-0016 3 4
0415-0017 3
0415-0019 3 4
0415-0020 2 3
0415-0025 3 4
AE_HCxJonf-145 2 3
AE_HCXJonf-148 3
AE_HCxJonf-157 2
AE_HCXJonf-162 2 3
AE_HCXJonf-168 2 3
AE_HCxJonf-175 3
AE_HCxJonf-183 2 3
AE_HCxJonf-185 2 3
AE0118-237 2 3
AE0118-238 2 3
AE0118-239 2 3
AE0118-240 2 3
AE0118-243 2 3
AE0118-244 2 3
AE0118-245 3
AE0118-246 3
AE0118-249 3
AE0206-159 2 4
AE0206-160 2 4
AE0206-161 3 4
AE0206-162 2
AE0206-163 3 4
AE0206-164 2 3
AE0206-165 3 4
AE0206-167 2
AE0206-168 2
AE0206-169 2 3
AE0206-170 3 4
AE0210-146 2 20
AE0210-147 2 3
AE0210-149 2 20
AE0210-150 2 3
AE0210-151 2 3
AE0210-152 2
AE0210-153 2 3
AE0210-154 2 3
AE0210-157 2 3
AE0210-158 2 20
AE0210-159 2 20
AE0210-162 2 20
AE0210-163 2 3
AE0210-164 2 20
AE0210-165 2 20
AE0210-166 2 20
AE0210-168 2 20
AE0210-169 2 20
AE0210-170 2 20
AE0210-171 2 3
AE0210-172 2 20
AE0210-173 2 3
AE0210-174 2 3
AE0213-175 2 20
AE0213-176 20 3
AE0213-177 2 20
AE0213-178 2 20
AE0213-179 2 20
AE0213-180 20 3
AE0213-181 2 20
AE0213-182 2 20
AE0213-183 2 20
AE0213-186 20 3
AE0213-187 20 3
AE0213-190 20 3
AE0213-193 2 20
AE0213-194 2 20
AE0213-195 20 3
AE0213-196 20 3
AE0213-197 2 20
AE0213-198 2 20
AE0213-199 20 3
AE0213-200 20 3
AE0213-201 2 20
AE0213-202 2 20
AE0213-205 20 3
AE0213-206 20 3
AE0251-323 2 4
AE0251-325 3 4
AE0251-327 2 3
AE0251-329 2 4
AE0251-330 2
AE0251-331 3 4
AE0251-342 2 3
AE0251-343 2 4
AE0406-239 2
AE0406-254 2
AE0406-258 2
AE0406-259 2
AE0406-263 2
AE0406-264 2 3
AE0406-266 2 3
AE0406-271 3
AE0406-274 2 3
AE0406-278 2
AE0406-281 2
AE0406-286 2
AE0406-288 2
AE0406-289 2 3
AE0406-294 2 3
AE0406-298 2
Minneiska 3
NJ 303955 2
PRI 612-1 4 6
Arlet 2
Co-op 39 2
Pinova 2 3
Scired 2
Scifresh 2 4
0409-0025 3 4
0409-0026 3 4
0409-0027 2 3
0409-0031 3 4
0409-0033 2 3
0409-0047 2 4
G-14-050 2 3
G-14-052 2
G-14-054 3 4
G-14-055 3 4
G-14-056 3 4
G-14-057 2 3
G-14-059 2
G-14-060 3 4
G-14-061 2
G-14-062 2 3
G-14-064 2
G-14-065 2
G-14-069 2 3
G-14-067 2 3
G-14-068 2 3
G-14-071 2
G-14-073 2
G-14-074 2
G-14-075 2 4
G-14-076 2
G-14-077 2
G-14-078 2
G-14-080 2 4
G-09-232 2 3
G-09-233 3 4
G-09-234 2
G-09-235 3 4
G-09-236 2
G-09-237 2 4
G-09-238 2 4
G-09-239 2
G-09-240 2 3
G-09-241 2 3
G-09-242 2 4
G-09-243 2 3
G-09-245 2 4
G-09-246 2 4
G-09-258 2 4
G-09-259 2 4
G-09-260 3 4
G-09-261 2
G-09-262 3 4
G-09-263 2 3
G-09-264 2
G-09-265 2 4
G-09-266 2
G-09-267 2 3
G-09-268 2
0408-0021 4
Wijcik McIntosh 3
Priam 2 6
Northern Spy 2 3
Co-op 15 2 6
MN 1702 2 3
WA 2 2 4
WA 5 2
Pitmaston Pineapple 2 3
0411-0011 2 4
0411-0017 2 3
0411-0023 2 4
AE0250-086 2 3
AE0250-087 3 4
AE0250-089 3 4
AE0250-090 2 4
AE0250-092 2 4
AE0250-093 2 4
AE0250-094 2
AE0250-095 2 3
Sonya 2
Co-op 38 2 4
AE0250-096 2
AE0250-327 2 3
Co-op 30 3 4
AE0211-036 3
G-07-039 2 44
G-07-041 2 4
BC-8S-27-43 2 4
AE0250-091 2 3
AE0250-097 2 20
AE0250-325 20 3
AE0250-326 3
AE0250-329 20 3
AE0250-333 3
AE0250-334 2 20
AE0250-335 2 20
AE0250-336 3
AE0250-338 2 3
AE0250-341 2 20
AE0211-038 2 20
AE0211-043 2 20
AE0211-045 2 20
AE0211-051 20 3
G-07-010 2
G-07-014 2
G-07-015 2
G-07-019 2
G-07-020 2
G-07-024 2
G-07-032 2
G-07-033 2
G-07-034 2
G-07-035 2
G-07-044 2
AE0211-054 3
AE0250-088 2
AE0250-324 2 3
AE0250-328 2 3
AE0250-331 2
AE0250-332 2 3
AE0250-337 2 3
AE0250-339 2 3
Minnewashta 2 3
Autumn Crisp 2
G-14-066 2 4
Lu1-11-010 3
Lu1-11-013 3 4
Lu1-11-016 2 4
Lu1-11-017 3
Lu1-11-018 3 4
NJ 90 2 3
Lord Lambourne 2 3
Antonovka GH 50 51
Kidds Orange Red 2 4
Malus baccata Hansen #2 6
Malus baccata Jackii 6
Summerred 3
William's Pride 39 40
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-15-2Apple-RosBREED-3.9K-20191500.27
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253
RosBREEDSNP_SNP_CT_25007003_Lg12_02228_MAF40_463941_exon1BAA-A---BABAABAAAAA----BAA-BAB-BAB---ABBAAAABAABBA-A
RosBREEDSNP_SNP_GA_25015289_Lg12_02228_MAF20_982401_exon1BBABAA--BBBAABBAABBBBB-BBAABABAB--BABAB--ABBABBBBBBB
RosBREEDSNP_SNP_GA_25019435_Lg12_02228_MAF50_505255_exon1BAA-A---BABAABAAAAA----B----AB-BABB--BAABAABBABAAB-A
RosBREEDSNP_SNP_GT_25044080_Lg12_02228_MAF40_506871_exon1BAB-B-BBBABB-BAA--AAA-AAABBB---BABBBBBBBAABABBAAAB-B
RosBREEDSNP_SNP_TC_25009893_Lg12_02228_MAF30_509994_exon3ABA-A-AAA--AAABAABABA-BABAA----BBA-AAAABAAABAAAAABAB
RosBREEDSNP_SNP_TC_25024118_Lg12_02228_MAF30_1627525_exon1AAB-B----AA-B-ABBAAAAA-AABBABABA--ABABA--BBABABBAAAA
RosBREEDSNP_SNP_TC_25046165_Lg12_02228_MAF10_1680266_exon1AAB-A-BAAAABB-BAAAAAAAAAABBABAAA--AAABA--BAABAAAAAAB
Alignments
Feature NameTypeLocationAnalysis
Chr15 chromosome Chr15:333864..372120. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation