Mdo-HB-15-17

Haplotype Block Overview

Name	Mdo-HB-15-17
Species	Malus x domestica
Stock Haplotype	[view all 431]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Cox's Orange Pippin	10 5
Rome Beauty Law	5
Jonafree	5
Redfree	5
Spartan	5 6
Wagener	5
Worcester Pearmain	4
Tsugaru	5
Golden Delicious	4 5
Fuji	6
Empire	5 6
Gala	5 6
Honeycrisp	5 9
Elstar	10 5
Marshall McIntosh	5
Cripps Pink	4 5
Granny Smith	5
Jonathan	4 5
Ralls Janet	12 6
Delicious	5 6
Prima	5
821	5 9
Fiesta	5
Ingrid Marie	10 5
Idared	4 5
Esopus Spitzenburg	10 5
Braeburn	10 6
Sansa	5 6
Lodi	4 5
James Grieve	5 9
Cripps Red	4
Burgundy	4 5
Akane	4 5
Ambrosia	4 6
Aurora Golden Gala	5 6
Beacon	11 12
Ben Davis	4 5 6
Cameo	5
Chinook	5
Clivia	10 6
Co-op 17	4 6
Co-op 18	5
Dayton	5
Delblush	4 6
Delorgue	4
Dolgo	11 9
Geheimrat Dr. Oldenburg	4 6
Duchess of Oldenburg	4 6
Early Cortland	5
Empress	5
F2 26829-2-2	5
Fantazja	5
Fireside	5 6
Fortune	5
Frostbite	5 9
Ginger Gold	4 5
GMAL 4327	4 5
GMAL 4328	4 5
GMAL 4329	4 5
GMAL 4332	4 5
Goodland	4 5
Haralson	4
Honeygold	4
Hudson	10 5
Jersey Black	12 4
Jonamac	5
Keepsake	10 9
Kerr	4 9
Lady Williams	4 5
Liberty	4 5
Linda	11 5
Liveland Raspberry	4 5
Longfield	28 41
Macoun	4 5
Malinda	4 5
Mantet	5
Melba	5
Melrose	4 6
MN 1627	5 6
MN 1628	5
MN 1691	5
MN 1706	31 9
MN 1708	6 9
MN 1760	10 5
MN 1764	10 5
MN 1789	5
MN 1802	4 5
MN 1836	10 5
MN 1837	5
MN 1839	5 6
MN 1888	5 6
MN 1899	4 5
MN 1940	5
MN 2016	5
AA-44	4 5
Monroe	4 5
Montgomery	5
Nicola	5 6
NJ 31	5
NJ 53	4 5
Oriole	4
PRI 14-126	5
PRI 14-510	5
PRI 16-144	5
PRI 1661-2	5
PRI 54-12	4 5
PRI 855-102	5
Primula	5
Raritan	5
Regent	4 5
Russian Seedling	5
Sawa	5
Sciros	5 6
Sharon	4 5
Silken	4 5
Wildung	5 6
Splendour	5 6
State Fair	4 5
NJ 55	4 5
Co-op 29	4 5
Sunrise	5
Sweet Sixteen	10 5
Topaz	5 6
Vista Bella	5
Wealthy	4 5
Winesap	12 6
Winter Banana	28 38
Yellow Newtown	31 9
Yellow Transparent	4 6
0407-0001	5 6
0407-0005	4 5
0407-0006	4 6
0407-0007	5 6
0407-0008	5 6
0408-0003	5
0408-0004	5
0408-0005	5
0408-0007	5
0408-0008	5 6
0408-0010	5 6
0408-0011	5
0408-0014	5
0408-0015	5 6
0409-0022	6 9
0409-0024	5 6
0409-0028	6 9
0409-0030	5 9
0409-0032	5
0409-0035	5 9
0409-0036	5
0409-0038	5 9
0409-0039	6 9
0409-0040	5
0409-0043	5
0409-0045	5 6
0410-0002	5 6
0410-0003	5
0410-0005	5 6
0410-0006	5
0410-0010	5 6
0410-0011	5 6
0410-0012	5 6
0410-0013	5
0410-0015	5 6
0410-0017	5 6
0410-0018	5
0414-0010	5 9
0414-0015	4 5
0414-0017	4 5
0414-0018	5
0414-0019	4 5
0414-0020	5
0414-0021	4 5
0415-0001	5 9
0415-0004	5
0415-0005	5
0415-0011	5
0415-0012	5 9
0415-0013	5 9
0415-0014	5 9
0415-0016	5 9
0415-0017	5 9
0415-0019	5 9
0415-0020	5
0415-0025	5 9
AE_HCxJonf-145	5
AE_HCXJonf-148	5 9
AE_HCxJonf-157	5
AE_HCXJonf-162	5
AE_HCXJonf-168	5
AE_HCxJonf-175	5
AE_HCxJonf-183	5
AE_HCxJonf-185	5 9
AE0118-237	4 5
AE0118-238	5 9
AE0118-239	6 9
AE0118-240	4 5
AE0118-243	4 5
AE0118-244	5
AE0118-245	4 9
AE0118-246	4 5
AE0118-249	4 5
AE0206-159	5 6
AE0206-160	5 6
AE0206-161	4 5
AE0206-162	5 6
AE0206-163	4 6
AE0206-164	4 5
AE0206-165	4 6
AE0206-167	5
AE0206-168	4 6
AE0206-169	4 6
AE0206-170	5
AE0210-146	4 5
AE0210-147	4 5
AE0210-149	4 5
AE0210-150	5
AE0210-151	5
AE0210-152	4 5
AE0210-153	5
AE0210-154	4 5
AE0210-157	4 5
AE0210-158	5
AE0210-159	5
AE0210-162	5
AE0210-163	5
AE0210-164	5
AE0210-165	4 5
AE0210-166	5
AE0210-168	4 5
AE0210-169	4 5
AE0210-170	4 5
AE0210-171	5
AE0210-172	4 5
AE0210-173	4 5
AE0210-174	4 5
AE0213-175	4 5
AE0213-176	4 5
AE0213-177	4 5
AE0213-178	4 5
AE0213-179	5
AE0213-180	4 5
AE0213-181	4 5
AE0213-182	4
AE0213-183	5
AE0213-186	5
AE0213-187	4 5
AE0213-190	4 5
AE0213-193	4
AE0213-194	4
AE0213-195	4 5
AE0213-196	4 5
AE0213-197	4 5
AE0213-198	5 6
AE0213-199	5
AE0213-200	5
AE0213-201	4
AE0213-202	4 5
AE0213-205	4 5
AE0213-206	5
AE0251-323	5 6
AE0251-325	5 6
AE0251-327	5
AE0251-329	5
AE0251-330	10 6
AE0251-331	5 6
AE0251-342	5
AE0251-343	10 6
AE0406-239	5
AE0406-254	4 5
AE0406-258	4 5
AE0406-259	4 5
AE0406-263	5
AE0406-264	4 9
AE0406-266	4 9
AE0406-271	4 9
AE0406-274	5 9
AE0406-278	4 5
AE0406-281	5
AE0406-286	4 5
AE0406-288	4 5
AE0406-289	5 9
AE0406-294	5 9
AE0406-298	5
Minneiska	4 5
NJ 303955	5
PRI 612-1	5 6
Arlet	4 5
Co-op 39	16 21
Pinova	4 6
Scired	5 6
Scifresh	10 6
0409-0025	5 6
0409-0026	6 9
0409-0027	5 9
0409-0031	5
0409-0033	5 9
0409-0047	5 6
G-14-050	5 6
G-14-052	4 5
G-14-054	5 6
G-14-055	5 6
G-14-056	4 5
G-14-057	4 5
G-14-059	6
G-14-060	5 6
G-14-061	6
G-14-062	5 6
G-14-064	4 5
G-14-065	4 5
G-14-069	6
G-14-067	6
G-14-068	5 6
G-14-071	4 5
G-14-073	4 5
G-14-074	6
G-14-075	4 6
G-14-076	6
G-14-077	4 5
G-14-078	6
G-14-080	4 5
G-09-232	10 5
G-09-233	5 6
G-09-234	10 4
G-09-235	4 6
G-09-236	10 4
G-09-237	4 6
G-09-238	4 6
G-09-239	10 5
G-09-240	10 5
G-09-241	10 4
G-09-242	5 6
G-09-243	4 6
G-09-245	10 5
G-09-246	10 4
G-09-258	4 6
G-09-259	10 4
G-09-260	5 6
G-09-261	10 4
G-09-262	5 6
G-09-263	10 4
G-09-264	10 4
G-09-265	10 5
G-09-266	10 5
G-09-267	4 6
G-09-268	5 6
0408-0021	5 6
Wijcik McIntosh	5
Beauty of Bath	4
Priam	4 5
Northern Spy	10 5
Co-op 15	5 6
MN 1702	5
WA 2	5 6
WA 5	5
Pitmaston Pineapple	4 5
0411-0011	5
0411-0017	4 5
0411-0023	4 5
AE0250-086	5
AE0250-087	5
AE0250-089	5 6
AE0250-090	5 6
AE0250-092	5 6
AE0250-093	10 6
AE0250-094	10 5
AE0250-095	5 6
Sonya	5 6
Co-op 38	4 5
AE0250-096	5
AE0250-327	5
Co-op 30	5
Jonagrimes	3 6
AE0211-036	4 5
G-07-039	5 6
PRI 14-152	4 5
PRI 47-176	5
G-07-041	5 6
BC-8S-27-43	5 6
AE0250-091	4 5
AE0250-097	5 9
AE0250-325	4 5
AE0250-326	4 9
AE0250-329	4 9
AE0250-333	5
AE0250-334	4 5
AE0250-335	4 5
AE0250-336	4 5
AE0250-338	5
AE0250-341	4 5
AE0211-038	4
AE0211-043	4
AE0211-045	4 5
AE0211-051	4
G-07-010	5
G-07-014	5
G-07-015	5 6
G-07-019	5
G-07-020	5 6
G-07-024	5 6
G-07-032	5
G-07-033	5 6
G-07-034	5 6
G-07-035	5 6
G-07-044	5
AE0211-053	4 5
AE0211-054	4 5
AE0250-088	5
AE0250-324	5 9
AE0250-328	4 5
AE0250-331	5
AE0250-332	4 9
AE0250-337	5 9
AE0250-339	4 5
Minnewashta	4 5
Autumn Crisp	5
G-14-066	4 6
Lu1-11-010	5 6
Lu1-11-013	5 6
Lu1-11-016	5 6
Lu1-11-017	5 6
Lu1-11-018	5 6
NJ 90	5
Lord Lambourne	4 5
Antonovka GH	37 9
Grimes Golden	3 4
Kidds Orange Red	5 6
Malus baccata Hansen #2	11 24
Malus baccata Jackii	9
Summerred	6
William's Pride	4 5

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Mdo-HB-15-17	Apple-RosBREED-3.9K-2019	15	28.62	28.62

Projects


Project Name
RosBREED_Apple_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42
GDsnp00076	A	B	A	B	B	-	-	B	B	B	B	B	B	B	B	B	-	-	-	A	B	B	B	-	A	B	B	A	B	A	A	B	A	A	B	A	B	B	A	A	A
RosBREEDSNP_SNP_AC_6637190_Lg15_MDP0000156137_MAF30_MDP0000156137_exon1	-	-	B	A	A	-	-	B	B	-	-	-	A	A	B	A	A	B	A	A	B	-	-	-	-	-	A	-	-	B	A	-	B	-	A	A	B	-	-	B	-
RosBREEDSNP_SNP_AC_6637447_Lg15_MDP0000156137_MAF20_MDP0000156137_exon1	A	A	A	A	B	B	A	A	A	B	A	A	-	A	A	A	A	A	A	A	B	A	A	A	A	B	A	-	-	A	A	B	-	A	-	A	A	-	-	A	A
RosBREEDSNP_SNP_GA_6636944_Lg15_MDP0000156137_MAF40_MDP0000156137_exon1	A	A	A	B	B	-	-	A	A	B	B	-	B	A	B	-	-	A	B	A	B	-	A	-	-	-	A	A	B	A	A	-	A	A	-	B	B	-	-	B	-
RosBREEDSNP_SNP_GA_6637385_Lg15_MDP0000156137_MAF10_MDP0000156137_exon1	B	A	B	B	B	B	B	B	A	B	B	B	B	A	B	B	B	B	B	B	B	-	B	-	-	-	B	-	-	A	A	A	B	A	B	B	A	-	-	B	B

Alignments

Feature Name	Type	Location	Analysis
Chr15	chromosome	Chr15:9711711..9754910.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation