Mdo-HB-15-16

Haplotype Block Overview
Name Mdo-HB-15-16
Species Malus x domestica
Stock Haplotype [view all 419]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 7 8
Rome Beauty Law 21 8
Jonafree 21 4
Redfree 17 80
Spartan 10 9
Wagener 21 8
Worcester Pearmain 49 5
Tsugaru 4 8
Golden Delicious 4
Fuji 9
Empire 14 9
Gala 4 9
Honeycrisp 4 7
Elstar 4 7
Marshall McIntosh 10 14
Cripps Pink 4
Granny Smith 13 4
Jonathan 4 8
Ralls Janet 12 9
Delicious 10 9
Discovery 4 5
Prima 4 8
Fiesta 21 8
Ingrid Marie 21 7
Idared 21 4
Esopus Spitzenburg 7 8
Braeburn 7 9
Sansa 8 9
Lodi 21 31
James Grieve 7 8
Cripps Red 4
Burgundy 21 4
Akane 5 8
Ambrosia 4 9
Aurora Golden Gala 4 9
Beacon 6
Ben Davis 21 4 9
Cameo 10 4
Chinook 4
Clivia 6 7
Co-op 17 4 9
Co-op 18 69 70
Dayton 17 4 8
Delblush 4 9
Delorgue 4 5
Dolgo 12 31
Geheimrat Dr. Oldenburg 4 6
Duchess of Oldenburg 5 6
Early Cortland 14 21
Empress 10 4
F2 26829-2-2 21 8
Fantazja 14 8
Fireside 8 9
Fortune 21
Frostbite 7 8
Ginger Gold 21 4
GMAL 4327 4 41
GMAL 4328 4 41
GMAL 4329 10 4
GMAL 4332 10 4
Goodland 10 5
Haralson 4 5
Honeygold 4
Hudson 14 7
Jersey Black 4 42
Jonamac 10 4
Keepsake 7
Kerr 31 4
Lady Williams 4
Liberty 10 5
Linda 8 9
Liveland Raspberry 4 58
Longfield 31 77
Macoun 10 4
Malinda 4 6
Melba 14 58
MN 1627 4 6
MN 1628 4 8
MN 1691 10 8
MN 1706 5 7
MN 1708 6 7
MN 1760 31 61
MN 1764 7 8
MN 1789 4 8
MN 1802 4 8
MN 1836 10 7
MN 1837 10 4
MN 1839 4 9
MN 1888 10 6
MN 1899 5 8
MN 1940 10 4
MN 2016 10 21
AA-44 17 4
Monroe 21 4
Montgomery 21 6
Nicola 4 9
NJ 31 4
NJ 53 10 4
Oriole 4 5
PRI 14-126 4 8
PRI 16-144 21
PRI 1661-2 10 8
PRI 855-102 21
Primula 14 4
Raritan 6 79
Regent 10 5
Russian Seedling 18 81
Sawa 4 8
Sciros 4 9
Sharon 14 4
Silken 14 4
Wildung 14 9
Splendour 4 9
State Fair 10 4
NJ 55 4 8
Co-op 29 4 8
Sunrise 14 4
Sweet Sixteen 7 8
Topaz 8 9
Vista Bella 10 17
Wealthy 5 8
Winesap 6 9
Winter Banana 5 85
Yellow Newtown 4 7
Yellow Transparent 31 6
0407-0001 21 9
0407-0005 4
0407-0006 4 9
0407-0007 21 9
0407-0008 21 9
0408-0003 4 8
0408-0004 10 4
0408-0005 10 4
0408-0007 4 8
0408-0008 10 9
0408-0010 8 9
0408-0011 8
0408-0014 10 4
0408-0015 8 9
0409-0022 7 9
0409-0024 4 9
0409-0028 7 9
0409-0030 4 7
0409-0032 4
0409-0035 4 7
0409-0036 4
0409-0038 4 7
0409-0039 7 9
0409-0040 4
0409-0043 4
0409-0045 4 9
0410-0002 13 9
0410-0003 4
0410-0005 4 9
0410-0006 4
0410-0010 4 9
0410-0011 13 9
0410-0012 4 9
0410-0013 4
0410-0015 4 9
0410-0017 4 9
0410-0018 13 4
0414-0010 21 7
0414-0015 4
0414-0017 4
0414-0018 4 8
0414-0019 4
0414-0020 10 4
0414-0021 4
0415-0001 7 8
0415-0004 10 4
0415-0005 4 8
0415-0011 4 8
0415-0012 7 8
0415-0013 10 7
0415-0014 21 7
0415-0016 7 8
0415-0017 10 7
0415-0019 10 7
0415-0020 4 8
0415-0025 7 8
AE_HCxJonf-145 4
AE_HCXJonf-148 21 7
AE_HCxJonf-157 21 4
AE_HCXJonf-162 21 4
AE_HCXJonf-168 14 4
AE_HCxJonf-175 4
AE_HCxJonf-183 21 4
AE_HCxJonf-185 21 7
AE0118-237 4 5
AE0118-238 10 4
AE0118-239 7 9
AE0118-240 4 5
AE0118-243 4 5
AE0118-244 10 4
AE0118-245 5 7
AE0118-246 4 5
AE0118-249 4 5
AE0206-159 10 9
AE0206-160 10 9
AE0206-161 4
AE0206-162 10 9
AE0206-163 4 9
AE0206-164 4
AE0206-165 4 9
AE0206-167 10 4
AE0206-168 4 9
AE0206-169 4 9
AE0206-170 10 4
AE0210-146 4
AE0210-147 14 4
AE0210-149 4
AE0210-150 10 14
AE0210-151 10 4
AE0210-152 4
AE0210-153 10 4
AE0210-154 14 4
AE0210-157 4
AE0210-158 10 4
AE0210-159 10 4
AE0210-162 10 14
AE0210-163 10 14
AE0210-164 10 14
AE0210-165 14 4
AE0210-166 10 14
AE0210-170 14 4
AE0210-171 10 14
AE0210-172 4
AE0210-173 14 4
AE0210-174 14 4
AE0213-175 10 4
AE0213-176 21 4
AE0213-177 21 4
AE0213-178 10 4
AE0213-180 21 4
AE0213-181 21 4
AE0213-182 4
AE0213-183 10 21
AE0213-186 10 21
AE0213-187 21 4
AE0213-190 21 4
AE0213-193 4
AE0213-194 4
AE0213-195 21 4
AE0213-196 10 4
AE0213-197 21 4
AE0213-198 21 9
AE0213-199 10 21
AE0213-200 10 21
AE0213-201 4
AE0213-202 10 4
AE0213-205 21 4
AE0213-206 10 21
AE0251-323 8 9
AE0251-325 8 9
AE0251-327 4 8
AE0251-329 4 8
AE0251-330 7 9
AE0251-331 8 9
AE0251-342 4 8
AE0251-343 7 9
AE0406-239 14 4
AE0406-254 4
AE0406-258 4
AE0406-259 4
AE0406-263 14 4
AE0406-264 4 7
AE0406-266 4 7
AE0406-271 4 7
AE0406-274 14 7
AE0406-278 4
AE0406-281 14 4
AE0406-286 4
AE0406-288 4
AE0406-289 14 7
AE0406-294 14 7
AE0406-298 14 4
Minneiska 4
NJ 303955 8
PRI 612-1 8 9
Arlet 21 4
Co-op 39 4 8
Pinova 4 6
Scired 4 9
Scifresh 7 9
0409-0025 4 9
0409-0026 7 9
0409-0027 4 7
0409-0031 4
0409-0033 4 7
0409-0047 4 9
G-14-050 21 6
G-14-052 21 4
G-14-054 21 6
G-14-055 21 6
G-14-056 21 4
G-14-057 21 4
G-14-059 6 9
G-14-060 21 6
G-14-061 6 9
G-14-062 21 6
G-14-064 21 4
G-14-065 21 4
G-14-069 6 9
G-14-067 6 9
G-14-068 21 6
G-14-071 21 4
G-14-073 21 4
G-14-074 6 9
G-14-075 4 9
G-14-076 6 9
G-14-077 21 4
G-14-078 6 9
G-09-232 21 7
G-09-233 21 9
G-09-234 4 7
G-09-235 4 9
G-09-236 4 7
G-09-237 4 9
G-09-238 4 9
G-09-239 21 7
G-09-240 21 7
G-09-241 4 7
G-09-242 21 9
G-09-243 4 9
G-09-245 21 7
G-09-246 4 7
G-09-258 4 9
G-09-260 21 9
G-09-261 4 7
G-09-262 21 9
G-09-263 4 7
G-09-264 4 7
G-09-265 21 7
G-09-266 21 7
G-09-267 4 9
G-09-268 21 9
0408-0021 10 9
Wijcik McIntosh 83 84
Beauty of Bath 4
Priam 4
Northern Spy 4 7
Co-op 15 8 9
MN 1702 8
WA 2 4 9
WA 5 4 8
Pitmaston Pineapple 4 6
0411-0011 10 21
0411-0017 4 8
0411-0023 4 8
AE0250-086 4 8
AE0250-087 4 8
AE0250-089 8 9
AE0250-090 8 9
AE0250-092 8 9
AE0250-093 7 9
AE0250-094 4 7
AE0250-095 8 9
Sonya 4 9
Co-op 38 4
AE0250-096 4 8
AE0250-327 4 8
Co-op 30 10 8
Jonagrimes 3 6
AE0211-036 21 4
G-07-039 6 8
G-07-041 8 9
BC-8S-27-43 4 9
AE0250-091 4
AE0250-097 41 7
AE0250-325 4
AE0250-326 4 7
AE0250-329 4 7
AE0250-333 4 41
AE0250-335 4
AE0250-336 4
AE0250-338 4 41
AE0250-341 4
AE0211-038 4
AE0211-043 4
AE0211-045 4 41
AE0211-051 4
G-07-010 13 8
G-07-014 13 8
G-07-015 13 9
G-07-019 4 8
G-07-020 13 9
G-07-024 13 9
G-07-032 4 8
G-07-033 4 9
G-07-034 13 9
G-07-035 13 9
G-07-044 4 8
AE0211-053 21 4
AE0211-054 21 4
AE0250-088 10 4
AE0250-324 10 7
AE0250-328 4
AE0250-331 10 4
AE0250-332 4 7
AE0250-337 10 7
AE0250-339 4
Minnewashta 10 4
Autumn Crisp 21 4
G-14-066 4 9
Lu1-11-010 8 9
Lu1-11-013 10 9
Lu1-11-016 8 9
Lu1-11-017 10 9
Lu1-11-018 10 9
NJ 90 10 8
Lord Lambourne 5 8
Antonovka GH 70 88
Grimes Golden 3 4
Kidds Orange Red 8 9
Malus baccata Hansen #2 31 6
Malus baccata Jackii 91
Summerred 4 6
William's Pride 17 4
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-15-16Apple-RosBREED-3.9K-20191527.0528.62
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 2345678910111213141516171819202122232425262728293031323334353637383940414243444546474849505152535455565758596061626364656667686970717273747576777879808182838485868788899091929394959697
RosBREEDSNP_SNP_AC_6548475_Lg15_00076_MAF40_1672512_exon1AAAABABBBBBBB--BB--BBBBBBBAB-BBBAB---ABBBABBA----BAB--ABBABA--A-A--AB-ABABAABBBBBBBB-BABABABB-BB
RosBREEDSNP_SNP_AG_6300357_Lg15_108706__108706_exon1ABABBBBBBBBABBBBBBBBBBB--BBAABBBAB---ABBBBA--BB--BBBABABBABBBBA-ABBABAABBBABABBBBBBB-AB--BBABABB
RosBREEDSNP_SNP_CA_6300232_Lg15_108706_MAF20_108706_exon1--BBBBABB--BB--BBABABA-BA-BBBBBABA---BBB-BBBBAB--BB--------ABB--ABBBABABAABBAABBABBBBBAABBBABABB
RosBREEDSNP_SNP_CT_6300421_Lg15_108706_MAF10_108706_exon1BABBBABBBBBBBBBBBBBBBBBBBBBBBBBBBBB--BBBBBBBBBBBBBAB----BBBABBBBABABBBABBBBBBBBBBBBABBB--B--ABBB
RosBREEDSNP_SNP_CT_6556135_Lg15_00076_MAF20_1622945_exon1--BBBBBBA--BBABBA--A--BBA-BBBBBA-------A--ABBBB------------BABBBABBBABAABBBBBBABBBABBBB---BBBBB-
RosBREEDSNP_SNP_TC_6300431_Lg15_108706_MAF10_108706_exon1ABAAABAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--AAAAAAAAAAAAABA----AAABAAAAAABAAAAAAAAAAAAAAAABAAA--A--BAAA
RosBREEDSNP_SNP_TC_6589830_Lg15_00076_MAF50_1635697_exon1AAAABABBABBBBBBAABAB--BBBBBAAA--AB-BA--BBAABABBBABAA----A--BABA-A--BABABAAABAABABABA-BBBAAABB-BB
RosBREEDSNP_SNP_TG_6579785_Lg15_00076_MAF30_1661433_exon6AAAAAAABBBAABAABA--ABAABAABAAAAAAAAAAABABABBAABAAAAA--ABBABABAAAAAAAAAAAAABAABBAABBA-BA--AAAAAAA
Alignments
Feature NameTypeLocationAnalysis
Chr15 chromosome Chr15:9369016..9676774. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation