Mdo-HB-15-12

Haplotype Block Overview
Name Mdo-HB-15-12
Species Malus x domestica
Stock Haplotype [view all 431]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 2
Rome Beauty Law 2 8
Jonafree 3 8
Redfree 13 41
Spartan 12 8
Wagener 4 6
Worcester Pearmain 2 40
Tsugaru 3 4
Golden Delicious 2 3
Fuji 2 8
Empire 12 8
Gala 3 8
Honeycrisp 3 5
Elstar 2 3
Marshall McIntosh 12
Cripps Pink 2 3
Granny Smith 3 4
Jonathan 2 4
Ralls Janet 2 6
Delicious 8 9
Discovery 2 58
Prima 2 3
821 15
Fiesta 2 6
Ingrid Marie 2 4
Idared 4 6
Esopus Spitzenburg 2
Braeburn 2 8
Sansa 2 8
Lodi 25 43
James Grieve 13 2
Cripps Red 2 4
Burgundy 12 4
Akane 2 40
Ambrosia 2 8
Aurora Golden Gala 3 8
Beacon 26 41
Ben Davis 2 7 8
Cameo 3 9
Chinook 3 8
Clivia 2 43
Co-op 17 4 8
Co-op 18 25 57
Dayton 12 2 3
Delblush 2 7
Delorgue 2 40
Dolgo 13 43
Geheimrat Dr. Oldenburg 43 8
Duchess of Oldenburg 2 4
Early Cortland 12 25 8
Empress 12 2
F2 26829-2-2 8
Fantazja 12 2
Fireside 13 2
Fortune 3 8
Frostbite 2 5
Ginger Gold 2 25
GMAL 4327 13 2
GMAL 4328 13 2
GMAL 4329 13 2
GMAL 4332 13 2
Goodland 2 4
Haralson 4
Honeygold 2 4
Hudson 12 6
Jersey Black 12 8
Jonamac 12 4
Keepsake 5 6
Kerr 13 4
Lady Williams 3 4
Liberty 12 4
Linda 12 2
Liveland Raspberry 2 8
Longfield 4 41
Macoun 12 8
Malinda 4 7
Mantet 2 34
Melba 12 2
Melrose 4 8
MN 1627 2 3
MN 1628 2 3
MN 1691 2
MN 1706 50 51
MN 1708 2 5
MN 1760 2 5
MN 1764 2 5
MN 1789 2 3
MN 1802 2
MN 1836 2 6
MN 1837 2 3
MN 1839 13 3
MN 1888 2
MN 1899 2 4
MN 1940 12 2
MN 2016 2 6
AA-44 2 4
Monroe 2 4
Montgomery 13 25
Nicola 3 8
NJ 31 3
NJ 53 2 4
Oriole 4 8
PRI 14-126 2 8
PRI 14-510 3 8
PRI 16-144 8
PRI 1661-2 12 8
PRI 54-12 4 8
PRI 855-102 8
Primula 12 2
Raritan 12 2
Regent 12 4
Russian Seedling 25
Sawa 2
Sciros 3
Sharon 12 8
Silken 2
Wildung 12 13
Splendour 3 8
State Fair 2 4
NJ 55 2
Co-op 29 2 8
Sunrise 2 3
Sweet Sixteen 2 6
Topaz 2 40
Vista Bella 2
Wealthy 2 4
Winesap 7 8
Winter Banana 13 66
Yellow Newtown 67 68
Yellow Transparent 12 43
0407-0001 6 8
0407-0005 2 3
0407-0006 2 8
0407-0007 6 8
0407-0008 3 6
0408-0003 12 8
0408-0004 12 3
0408-0005 12 3
0408-0007 2 3
0408-0008 12 8
0408-0010 2 8
0408-0011 2 8
0408-0014 12 3
0408-0015 2 3
0409-0022 3 8
0409-0024 3 8
0409-0028 5 8
0409-0030 3 5
0409-0032 3
0409-0035 3 5
0409-0036 3
0409-0038 3
0409-0039 5 8
0409-0040 3
0409-0043 3
0409-0045 3 8
0410-0002 4 8
0410-0003 3
0410-0005 3 8
0410-0006 3
0410-0010 3 8
0410-0011 4 8
0410-0012 3 8
0410-0013 3
0410-0015 3 8
0410-0017 3 8
0410-0018 3 4
0414-0010 5 6
0414-0015 2 3
0414-0017 2 3
0414-0018 2 3
0414-0019 2 3
0414-0020 12 3
0414-0021 2 3
0415-0001 2 5
0415-0004 12 3
0415-0005 2 3
0415-0011 2 3
0415-0012 2 5
0415-0013 12 5
0415-0014 5 6
0415-0016 2 5
0415-0017 12 5
0415-0020 2 3
0415-0025 2 5
AE_HCxJonf-145 3
AE_HCXJonf-148 5 8
AE_HCxJonf-157 3 8
AE_HCXJonf-162 3 8
AE_HCXJonf-168 12 3
AE_HCxJonf-175 3
AE_HCxJonf-183 5 8
AE_HCxJonf-185 5 8
AE0118-237 3 4
AE0118-238 12 3
AE0118-239 3 5
AE0118-240 3 4
AE0118-243 3 4
AE0118-244 12 3
AE0118-245 4 5
AE0118-246 3 4
AE0118-249 3 4
AE0206-159 2 8
AE0206-160 2 8
AE0206-161 4 8
AE0206-162 2 8
AE0206-163 4 8
AE0206-164 3 4
AE0206-165 4 8
AE0206-167 2 3
AE0206-168 4 8
AE0206-169 4 8
AE0206-170 2 8
AE0210-146 13 3
AE0210-147 13 2
AE0210-149 2 3
AE0210-150 2
AE0210-151 13 3
AE0210-152 3 4
AE0210-153 2 3
AE0210-154 13 3
AE0210-157 13 2
AE0210-158 2 3
AE0210-159 2
AE0210-162 2
AE0210-163 2
AE0210-164 2
AE0210-165 13 2
AE0210-166 2
AE0210-168 2 3
AE0210-169 2 3
AE0210-170 13 2
AE0210-171 2
AE0210-172 13 3
AE0210-173 13 2
AE0210-174 13 2
AE0213-175 2
AE0213-176 13 25
AE0213-177 13 25
AE0213-178 13 2
AE0213-179 13 2
AE0213-180 13 25
AE0213-181 13 25
AE0213-182 13 2
AE0213-183 2 25
AE0213-186 2 25
AE0213-187 13 25
AE0213-190 13 25
AE0213-193 13 2
AE0213-194 13 2
AE0213-195 13 25
AE0213-196 2
AE0213-197 13 2
AE0213-198 25 39
AE0213-199 2 25
AE0213-200 2 25
AE0213-201 13 2
AE0213-202 2
AE0213-205 13 25
AE0213-206 2
AE0251-323 6 8
AE0251-325 2 8
AE0251-327 2 3
AE0251-329 2 3
AE0251-330 6 8
AE0251-331 2 8
AE0251-342 2 3
AE0251-343 6 8
AE0406-239 2 3
AE0406-254 2 3
AE0406-258 2 3
AE0406-259 2 3
AE0406-263 2 3
AE0406-264 2 5
AE0406-266 2 5
AE0406-271 4 5
AE0406-274 2 5
AE0406-278 2 3
AE0406-281 2 3
AE0406-286 2 3
AE0406-288 2 3
AE0406-289 2 5
AE0406-294 2 5
AE0406-298 2 3
Minneiska 4 5
NJ 303955 2
PRI 612-1 8 9
Arlet 2 6
Co-op 39 2 3
Pinova 2 43
Scired 3 8
Scifresh 2 8
0409-0025 3 8
0409-0026 5 8
0409-0027 3 5
0409-0031 3
0409-0033 3 5
0409-0047 3 8
G-14-050 2 43
G-14-052 2
G-14-054 2 43
G-14-055 2 43
G-14-056 2
G-14-057 2
G-14-059 43 8
G-14-060 2 43
G-14-061 2 43
G-14-062 2 43
G-14-064 2
G-14-065 2
G-14-069 43 8
G-14-067 2 43
G-14-068 43 8
G-14-071 2
G-14-073 2
G-14-074 2 8
G-14-075 2
G-14-076 43 8
G-14-077 2
G-14-078 43 8
G-14-080 2 8
G-09-232 2 25
G-09-233 25 8
G-09-234 2
G-09-235 2 8
G-09-236 2
G-09-237 2 8
G-09-238 2 8
G-09-239 2 25
G-09-240 2 25
G-09-241 2
G-09-242 25 8
G-09-243 25 8
G-09-245 2 8
G-09-246 2
G-09-258 2 8
G-09-259 2 8
G-09-260 25 8
G-09-261 2
G-09-262 25 8
G-09-263 2
G-09-264 2
G-09-265 25 8
G-09-266 2 25
G-09-267 2 8
G-09-268 25 8
0408-0021 12 8
Wijcik McIntosh 12
Beauty of Bath 55 58
Priam 2 4
Northern Spy 3 6
Co-op 15 2 9
MN 1702 2
WA 2 3 8
WA 5 2 3
Pitmaston Pineapple 2 8
0411-0011 12 6
0411-0017 12 2
0411-0023 2
AE0250-086 2 3
AE0250-087 3 6
AE0250-089 2 8
AE0250-090 2 8
AE0250-092 2 8
AE0250-093 6 8
AE0250-094 3 6
AE0250-095 2 3
Sonya 3 8
Co-op 38 3 8
AE0250-096 2 3
AE0250-327 2 3
Co-op 30 12 2
Jonagrimes 2
AE0211-036 13 25
G-07-039 2
PRI 14-152 3 8
PRI 47-176 2 8
G-07-041 2 8
BC-8S-27-43 3 8
AE0250-091 13 3
AE0250-097 2 5
AE0250-325 2 5
AE0250-326 13 5
AE0250-329 13 5
AE0250-333 2 3
AE0250-334 2 3
AE0250-335 13 3
AE0250-336 13 3
AE0250-338 2 3
AE0250-341 2 3
AE0211-038 13 2
AE0211-043 13 2
AE0211-045 2
AE0211-051 13 25
G-07-010 2 4
G-07-014 2 4
G-07-015 4 8
G-07-019 2 3
G-07-020 2 4
G-07-024 2 4
G-07-032 2 3
G-07-033 3 8
G-07-034 4 8
G-07-035 2 4
G-07-044 3 8
AE0211-053 25 4
AE0211-054 25 4
AE0250-088 2 3
AE0250-324 2 5
AE0250-328 3 4
AE0250-331 2 3
AE0250-332 2 5
AE0250-337 2 5
AE0250-339 3 4
Minnewashta 2 4
Autumn Crisp 2 3
G-14-066 2 8
Lu1-11-010 2
Lu1-11-013 12 2
Lu1-11-016 2 8
Lu1-11-017 12 8
Lu1-11-018 12 8
NJ 90 12 8
Lord Lambourne 2 40
Antonovka GH 40 70
Grimes Golden 2
Kidds Orange Red 2 8
Malus baccata Hansen #2 13 2
Malus baccata Jackii 13
Summerred 2 71
William's Pride 2 4
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-15-12Apple-RosBREED-3.9K-20191518.518.7
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
GDsnp00134BABBABBA--BBBBBBA-BAAB-BBB---BA---BBABBBABBB----BB--ABBABAABBBAABBB-BABAB
RosBREEDSNP_SNP_AG_3458220_Lg15_218648_MAF20_218648_exon1AAAAAABAAAAABA---A----AAA-AB---B-AAAAAAA-BBABA--AAAAAAABAAA-BAAABAA-BAAAA
RosBREEDSNP_SNP_AG_3458233_Lg15_218648_MAF10_218648_exon1AAAAABAAAABA--AAAAAAAAAABAAAAAAABBAAAAAAAAAA--AAAAAAA--AAAAAAAAAAAAAA--AA
RosBREEDSNP_SNP_CA_3556145_Lg15_01047_MAF20_1684295_exon6BBABBBBABBBBBBBBBBBBBBBBBBBB-BBB-BBABBAAABBB----BAAAAABBBABBBBABBABBBBBBB
RosBREEDSNP_SNP_CA_3576447_Lg15_01047_MAF20_302566_exon1BBABABBBBBBBBBBBBBBAABABBBBB---B-B---BBABBBB--ABABAAAABBBABBBBABBBABABBBB
RosBREEDSNP_SNP_GA_3542415_Lg15_01047_MAF30_877000_exon1BBBBBBABBBAB--ABBBABBBBAB-BA---A-ABBBABBBB--AB--BBBBABBBBBABABBBABB-ABBBB
RosBREEDSNP_SNP_TC_3458389_Lg15_218648_MAF20_218648_exon1AAAAAAABAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABAAA--AAAAAAA--ABAAAAAAAAAAAA--AA
RosBREEDSNP_SNP_TG_3558718_Lg15_01047_MAF40_674936_exon1AABBBAABABAAAAAAAA--BBBAAAAA---A-ABBAABBBAAA----BABBABBABBAAAABAABAAAAA--
Alignments
Feature NameTypeLocationAnalysis
Chr15 chromosome Chr15:6579994..6693532. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation