Mdo-HB-15-11

Haplotype Block Overview
Name Mdo-HB-15-11
Species Malus x domestica
Stock Haplotype [view all 425]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 4
Rome Beauty Law 4 7
Jonafree 5 6
Redfree 67 68
Spartan 7
Wagener 10 4
Worcester Pearmain 4 6
Tsugaru 5 6
Golden Delicious 4 5
Fuji 4 7
Empire 5 7
Gala 5 7
Honeycrisp 5 6
Elstar 4 5
Marshall McIntosh 5 7
Cripps Pink 4 5
Granny Smith 5 6
Jonathan 4 6
Ralls Janet 3 4
Delicious 13 7
Discovery 13 4
Prima 4 5
821 14 5
Fiesta 4
Ingrid Marie 4 6
Idared 4 6
Esopus Spitzenburg 4
Braeburn 4 7
Sansa 4 7
Lodi 4 7
James Grieve 26 4
Cripps Red 4 6
Burgundy 6 7
Akane 4 6
Ambrosia 4 7
Aurora Golden Gala 5 7
Beacon 37 38
Ben Davis 16 4 5 7
Cameo 13 5
Chinook 5 7
Clivia 4 5
Co-op 17 6 7
Co-op 18 54 55
Dayton 4 5 7
Delblush 4 5
Delcorf 4 41
Delorgue 4 6
Dolgo 5
Geheimrat Dr. Oldenburg 5 7
Duchess of Oldenburg 6 7
Early Cortland 16 4 5
Empress 4 7
F2 26829-2-2 16 7
Fantazja 5 6
Fireside 26 4
Fortune 5 7
Frostbite 4 6
Ginger Gold 4
GMAL 4327 26 32
GMAL 4328 26
GMAL 4329 26 28
GMAL 4332 26 28
Goodland 4 6
Haralson 6
Honeygold 4 6
Hudson 10 5
Jersey Black 7 9
Jonamac 6 7
Keepsake 10 6
Kerr 5 6
Lady Williams 5 6
Liberty 6 7
Linda 5 6
Longfield 6
Macoun 7
Malinda 5 6
Melba 4 5
MN 1627 5 7
MN 1628 10 4
MN 1691 4
MN 1706 48 49
MN 1708 6 7
MN 1760 4 6
MN 1764 4 6
MN 1789 4 5
MN 1802 4 50
MN 1836 10 4
MN 1837 4 5
MN 1839 26 5
MN 1888 4 7
MN 1899 4 6
MN 1940 4 7
MN 2016 4
AA-44 25 6
Monroe 4 6
Montgomery 4
Nicola 5 7
NJ 31 5
NJ 53 4 6
Oriole 4 6
PRI 14-126 4 7
PRI 14-510 5 7
PRI 1661-2 7
PRI 54-12 16 6
PRI 855-102 6
Primula 4 5
Raritan 65 66
Regent 6 7
Russian Seedling 28 5
Sawa 4 6
Sciros 5
Sharon 5 7
Silken 25 4
Wildung 26 5
Splendour 5 7
State Fair 4 6
NJ 55 4
Co-op 29 4 7
Sunrise 25 5
Sweet Sixteen 10 4
Topaz 4 6
Vista Bella 4 44
Wealthy 4 6
Winesap 5 7
Winter Banana 26 72
Yellow Newtown 73 74
Yellow Transparent 7
0407-0001 4 7
0407-0005 4 5
0407-0006 4 7
0407-0007 4 7
0407-0008 4 5
0408-0003 7
0408-0004 5 7
0408-0005 5 7
0408-0007 4 5
0408-0008 7
0408-0010 4 7
0408-0011 4 7
0408-0014 5 7
0408-0015 4 5
0409-0022 5 7
0409-0024 5 7
0409-0028 6 7
0409-0030 5 6
0409-0032 5
0409-0035 5 6
0409-0036 5
0409-0038 5
0409-0039 6 7
0409-0040 5
0409-0043 5
0409-0045 5 6
0410-0002 7
0410-0003 5
0410-0005 5 7
0410-0006 5
0410-0010 5 7
0410-0011 6 7
0410-0012 5 7
0410-0013 5
0410-0015 5 7
0410-0017 6 7
0410-0018 5 6
0414-0010 4 6
0414-0015 4 5
0414-0017 4 5
0414-0018 4 5
0414-0019 4 5
0414-0020 5 7
0414-0021 4 5
0415-0001 4 6
0415-0004 5 7
0415-0005 4 5
0415-0011 4 5
0415-0012 4 6
0415-0013 6 7
0415-0014 4 6
0415-0016 4 6
0415-0017 6 7
0415-0019 4 6
0415-0020 4 5
0415-0025 4 6
AE_HCxJonf-145 5
AE_HCXJonf-148 6
AE_HCxJonf-157 5 6
AE_HCXJonf-162 5 6
AE_HCXJonf-168 5 7
AE_HCxJonf-175 5
AE_HCxJonf-183 6
AE_HCxJonf-185 6
AE0118-237 5 6
AE0118-238 5 7
AE0118-239 5 6
AE0118-243 5 6
AE0118-244 5 7
AE0118-245 6
AE0118-246 5 6
AE0118-249 5 6
AE0206-159 4 7
AE0206-160 4 7
AE0206-161 6 7
AE0206-162 4 5
AE0206-163 6 7
AE0206-164 5 6
AE0206-165 6 7
AE0206-167 4 5
AE0206-168 6 7
AE0206-169 6 7
AE0206-170 4 7
AE0210-146 26 5
AE0210-147 25 26
AE0210-149 28 5
AE0210-150 25 28
AE0210-151 25 26
AE0210-152 5 6
AE0210-153 28 5
AE0210-154 26 5
AE0210-157 25 26
AE0210-158 28 5
AE0210-159 25 28
AE0210-162 25 28
AE0210-164 25 28
AE0210-165 25 26
AE0210-166 25 28
AE0210-168 28 5
AE0210-169 28 5
AE0210-170 25 26
AE0210-171 25 28
AE0210-172 26 5
AE0210-173 25 26
AE0210-174 25 26
AE0213-175 28 4
AE0213-176 26 4
AE0213-177 26 4
AE0213-178 26 4
AE0213-179 26 4
AE0213-180 26 4
AE0213-181 26 4
AE0213-182 26 4
AE0213-183 28 4
AE0213-186 28 4
AE0213-187 26 4
AE0213-190 26 4
AE0213-193 26 4
AE0213-194 26 4
AE0213-195 26 4
AE0213-196 28 4
AE0213-197 26 4
AE0213-198 30 4
AE0213-199 28 4
AE0213-200 28 4
AE0213-201 26 4
AE0213-202 28 4
AE0213-205 26 4
AE0213-206 28 4
AE0251-323 10 7
AE0251-325 4 7
AE0251-327 4 5
AE0251-329 4 7
AE0251-330 10 7
AE0251-331 4 7
AE0251-342 4 5
AE0251-343 10 7
AE0406-239 25 5
AE0406-254 4 5
AE0406-258 4 5
AE0406-259 4 5
AE0406-263 25 5
AE0406-264 4 6
AE0406-266 4 6
AE0406-271 6
AE0406-274 4 6
AE0406-278 4 5
AE0406-281 25 5
AE0406-286 4 5
AE0406-288 4 5
AE0406-289 25 6
AE0406-294 25 6
AE0406-298 25 5
Minneiska 6
NJ 303955 4
PRI 612-1 13 7
Arlet 4
Co-op 39 56 57
Pinova 4 5
Scired 5 7
Scifresh 4 7
0409-0025 5 7
0409-0026 6 7
0409-0027 5 6
0409-0031 5
0409-0033 5 6
0409-0047 5 7
G-14-050 4 5
G-14-052 4
G-14-054 4 5
G-14-055 4 5
G-14-056 4 5
G-14-057 4
G-14-059 5 7
G-14-060 4 5
G-14-061 4 5
G-14-062 4 5
G-14-064 4
G-14-065 4
G-14-067 4 5
G-14-068 5 7
G-14-071 4
G-14-073 4
G-14-074 4 7
G-14-075 4
G-14-076 5 7
G-14-077 4
G-14-078 5 7
G-14-080 4 7
G-09-232 4
G-09-233 4 7
G-09-234 4
G-09-235 4 7
G-09-236 4
G-09-237 4 7
G-09-238 4 7
G-09-239 4
G-09-240 4
G-09-241 4
G-09-242 4 7
G-09-243 4 7
G-09-245 4 7
G-09-246 4
G-09-258 4 7
G-09-259 4 7
G-09-260 4 7
G-09-261 4
G-09-262 4 7
G-09-263 4
G-09-264 4
G-09-265 4 7
G-09-266 4
G-09-267 4 7
G-09-268 4 7
0408-0021 7
Wijcik McIntosh 26 71
Beauty of Bath 13 6
Priam 4 6
Northern Spy 10 5
Co-op 15 13 4
MN 1702 4
WA 2 5 7
WA 5 4 5
Pitmaston Pineapple 4 7
0411-0011 4 7
0411-0017 4 7
0411-0023 4
AE0250-086 4 5
AE0250-087 10 5
AE0250-089 4 7
AE0250-090 4 7
AE0250-092 4 7
AE0250-093 10 7
AE0250-094 10 5
AE0250-095 4 5
Sonya 5 7
Co-op 38 5 7
AE0250-096 4 5
AE0250-327 4 5
Co-op 30 4 7
Jonagrimes 3 7
AE0211-036 26 4
G-07-039 4 7
PRI 14-152 5 7
PRI 47-176 4 7
G-07-041 4 7
BC-8S-27-43 5 7
AE0250-091 26 5
AE0250-097 32 6
AE0250-325 32 6
AE0250-326 26 6
AE0250-329 26 6
AE0250-333 26 5
AE0250-334 32 5
AE0250-335 26 5
AE0250-336 26 5
AE0250-338 32 5
AE0250-341 32 5
AE0211-038 26 4
AE0211-043 26 4
AE0211-045 26 4
AE0211-051 26 4
G-07-010 4 6
G-07-015 6 7
G-07-019 4 5
G-07-020 4 6
G-07-024 4 6
G-07-032 4 5
G-07-033 5 7
G-07-034 6 7
G-07-035 4 6
G-07-044 5 7
AE0211-053 4 6
AE0211-054 4 6
AE0250-088 4 5
AE0250-324 4 6
AE0250-328 5 6
AE0250-331 4 5
AE0250-332 4 6
AE0250-337 4 6
AE0250-339 5 6
Minnewashta 4 6
Autumn Crisp 4 5
G-14-066 4 7
Lu1-11-010 4
Lu1-11-013 4 5
Lu1-11-016 4 7
Lu1-11-017 5 7
Lu1-11-018 5 7
NJ 90 7
Lord Lambourne 4 6
Antonovka GH 49 76
Grimes Golden 3 4
Kidds Orange Red 4 7
Malus baccata Hansen #2 77 78
Malus baccata Jackii 5
Summerred 5 7
William's Pride 25 6
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-15-11Apple-RosBREED-3.9K-20191517.217.52
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374757677787980
GDsnp01814ABABBBBBBBBBB-BB-BBB--BABBAAABABABABBA--B-AA--ABA--ABBBAABBBABBABBABABAABBBBBBA
RosBREEDSNP_SNP_AG_3034504_Lg15_MDP0000136905_MAF20_MDP0000136905_exon4AAAAABBAAABAA-AAABAB--ABBBAABABABABAAA--AABA--AAAAAAAAAA--BA--AABAAAAAAAA-BABAA
RosBREEDSNP_SNP_CT_3046222_Lg15_01814_MAF20_480291_exon1BABBABBBABBBBBBBBBBB--ABBBBBBBBAB--BAB--BBBBABBAABAABABBBBBABBBBBABABBBABBBBB--
RosBREEDSNP_SNP_CT_3055741_Lg15_01814_MAF20_91367_exon1BBBBBAABBBABB-BBBBAA--BABABABBBBBBBBBB--BBAB--BBBBBABBBBBB-BBABBABBBBAABB-BBABB
RosBREEDSNP_SNP_GT_33384748_Lg3_MDP0000126553_MAF20_MDP0000126553_exon18--BBAB--BBBABBBBBBBBBA-BBABBBABABBBABB---BB---BABBAABABBBBBABB-BBBAABBBABBBBB--
RosBREEDSNP_SNP_TC_3031530_Lg15_MDP0000136905_MAF20_MDP0000136905_exon1AAAAABBAAABAA-AAAABB--ABBBAABABABABAAA--AABA--AAAAAAAAAA--BAABABAAAAAAAAA-BBAAA
RosBREEDSNP_SNP_TC_33384606_Lg3_MDP0000126553__MDP0000126553_exon18--ABnullB--B--nullnull-BBABBB--nullABnullBABnullnull--BnullBnull-AnullBBnullA--AnullA--BnullBABABBnullAB-BAnullAAnullBBnullABBBBBA
RosBREEDSNP_SNP_TG_3034625_Lg15_MDP0000136905_MAF40_MDP0000136905_exon4BABAAAAAAAAAA-B-BAA---AAAAAAABAAAAAAAB--ABAB--BAA--AAAABBAA-BAABABAABAAABAAAAAB
Alignments
Feature NameTypeLocationAnalysis
Chr15 chromosome Chr15:6153604..6405487. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation