Mdo-HB-15-10

Haplotype Block Overview
Name Mdo-HB-15-10
Species Malus x domestica
Stock Haplotype [view all 421]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 19 6
Rome Beauty Law 2 6
Jonafree 4 7
Redfree 19 4
Spartan 11 2
Wagener 4 6
Worcester Pearmain 6 7
Tsugaru 4 7
Golden Delicious 2 4
Fuji 2 6
Empire 2 5
Gala 2 4
Honeycrisp 4 7
Elstar 4 6
Marshall McIntosh 11 5
Cripps Pink 2 4
Granny Smith 4 7
Jonathan 7
Ralls Janet 4 6
Delicious 2 8
Discovery 6 8
Prima 4 6
821 12 5
Fiesta 19
Ingrid Marie 6 7
Idared 6 7
Esopus Spitzenburg 6 7
Braeburn 2 6
Sansa 2 7
Lodi 6
James Grieve 19 2
Cripps Red 2 7
Burgundy 11 7
Akane 7
Ambrosia 2
Aurora Golden Gala 2 4
Beacon 5
Ben Davis 2 5 6
Cameo 4 8
Chinook 2 4
Clivia 19 2
Co-op 17 2 7
Co-op 18 4 7
Dayton 11 4
Delblush 2 5
Delorgue 2 7
Dolgo 2 7
Geheimrat Dr. Oldenburg 2
Duchess of Oldenburg 5 6
Early Cortland 5 6
Empress 5 6
F2 26829-2-2 5 6
Fantazja 5
Fireside 2 7
Fortune 4 6
Frostbite 6 7
Ginger Gold 2 6
GMAL 4327 5
GMAL 4328 2 5
GMAL 4329 5
GMAL 4332 5
Goodland 5 6
Haralson 5 7
Honeygold 2 7
Hudson 4 5
Jersey Black 2 5
Jonamac 5 7
Keepsake 4 7
Kerr 7
Lady Williams 4 7
Liberty 11 5
Linda 5
Longfield 7
Macoun 11 2
Malinda 5 7
Mantet 33 6
Melba 5 6
MN 1627 4 6
MN 1628 4 6
MN 1691 6 7
MN 1706 5 6
MN 1708 6 7
MN 1760 6 7
MN 1764 6 7
MN 1789 4 7
MN 1802 7
MN 1836 4 6
MN 1837 6
MN 1839 2 4
MN 1888 6
MN 1899 5 7
MN 1940 5 6
MN 2016 6
AA-44 2 7
Monroe 6 7
Montgomery 6
Nicola 2 4
NJ 31 4
NJ 53 4 6
Oriole 5 6
PRI 14-126 2 5
PRI 14-510 4 5
PRI 1661-2 11 5
PRI 54-12 5 6
PRI 855-102 7
Primula 2 5
Raritan 2 28
Regent 11 5
Russian Seedling 5 51
Sawa 2 5
Sciros 4
Sharon 2 5
Silken 2
Wildung 2 5
Splendour 2 4
State Fair 6 7
NJ 55 19 2
Co-op 29 2 5
Sunrise 2 4
Sweet Sixteen 4 6
Topaz 19 7
Vista Bella 2 6
Wealthy 5 7
Winesap 2 5
Winter Banana 2 5
Yellow Newtown 54 55
Yellow Transparent 11 6
0407-0001 2 6
0407-0005 2 4
0407-0006 2
0407-0007 2 6
0407-0008 4 6
0408-0003 11 2
0408-0004 11 4
0408-0005 11 4
0408-0007 19 4
0408-0008 11 2
0408-0010 19 2
0408-0011 19 2
0408-0014 11 4
0408-0015 19 4
0409-0022 2 4
0409-0024 2 4
0409-0028 2 7
0409-0030 4 7
0409-0032 4
0409-0035 4 7
0409-0036 4
0409-0038 4
0409-0039 2 7
0409-0040 4
0409-0043 4
0409-0045 4 7
0410-0002 2 4
0410-0003 4
0410-0005 2 4
0410-0006 4
0410-0010 2 4
0410-0011 2 7
0410-0012 2 4
0410-0013 4
0410-0015 2 4
0410-0017 2 7
0410-0018 4 7
0414-0010 6 7
0414-0015 2 4
0414-0017 2 4
0414-0018 19 4
0414-0019 2 4
0414-0020 11 4
0414-0021 2 4
0415-0001 19 7
0415-0004 11 7
0415-0005 19 4
0415-0011 19 4
0415-0012 19 7
0415-0013 11 7
0415-0014 4 6
0415-0016 19 7
0415-0017 11 7
0415-0019 19 7
0415-0020 11 4
0415-0025 19 7
AE_HCxJonf-145 4
AE_HCXJonf-148 4 7
AE_HCxJonf-157 4 7
AE_HCXJonf-162 4 7
AE_HCXJonf-168 11 4
AE_HCxJonf-175 4
AE_HCxJonf-183 7
AE_HCxJonf-185 7
AE0118-237 4 5
AE0118-238 11 4
AE0118-239 4 7
AE0118-240 11 4
AE0118-243 4 5
AE0118-244 11 4
AE0118-245 5 7
AE0118-246 5 7
AE0118-249 4 5
AE0206-159 2 6
AE0206-160 2 6
AE0206-161 2 7
AE0206-162 4 6
AE0206-163 2 7
AE0206-164 4 7
AE0206-165 2 7
AE0206-167 4 6
AE0206-169 2 7
AE0206-170 2 6
AE0210-146 4 5
AE0210-147 2 5
AE0210-149 4 5
AE0210-150 2 5
AE0210-151 2 5
AE0210-152 4 7
AE0210-153 4 5
AE0210-154 4 5
AE0210-157 2 5
AE0210-159 2 5
AE0210-162 2 5
AE0210-163 4 5
AE0210-164 2 5
AE0210-165 2 5
AE0210-166 2 5
AE0210-168 4 5
AE0210-169 4 5
AE0210-170 2 5
AE0210-171 2 5
AE0210-172 4 5
AE0210-173 2 5
AE0210-174 2 5
AE0213-175 2 5
AE0213-176 5 6
AE0213-177 5 6
AE0213-178 2 5
AE0213-179 2 5
AE0213-180 5 6
AE0213-181 5 6
AE0213-182 2 5
AE0213-183 5 6
AE0213-186 5 6
AE0213-187 5 6
AE0213-190 5 6
AE0213-193 2 5
AE0213-194 2 5
AE0213-195 5 6
AE0213-196 2 5
AE0213-197 2 5
AE0213-198 2 6
AE0213-199 5 6
AE0213-200 5 6
AE0213-201 2 5
AE0213-202 2 5
AE0213-205 5 6
AE0213-206 2 5
AE0251-323 2 4
AE0251-327 4 6
AE0251-329 2 6
AE0251-330 2 4
AE0251-331 2 6
AE0251-342 4 6
AE0251-343 2 4
AE0406-239 2 4
AE0406-254 2 4
AE0406-258 2 4
AE0406-259 2 4
AE0406-264 2 7
AE0406-266 2 7
AE0406-271 7
AE0406-274 2 7
AE0406-278 2 4
AE0406-281 2 4
AE0406-286 2 4
AE0406-288 2 4
AE0406-289 2 7
AE0406-294 2 7
AE0406-298 2 4
Minneiska 7
NJ 303955 19
PRI 612-1 5 8
Arlet 2 6
Co-op 39 4
Pinova 2
Scired 2 4
Scifresh 2 6
0409-0025 2 4
0409-0026 2 7
0409-0027 4 7
0409-0031 4
0409-0033 4 7
0409-0047 2 4
G-14-050 2 6
G-14-054 2 6
G-14-055 2 6
G-14-056 2 6
G-14-057 2 6
G-14-059 2 6
G-14-060 2 6
G-14-061 2 6
G-14-062 2 6
G-14-064 2 6
G-14-065 2 6
G-14-069 2 6
G-14-067 2 6
G-14-068 2
G-14-071 2 6
G-14-073 2 6
G-14-074 2
G-14-075 2 6
G-14-076 2
G-14-077 2 6
G-14-078 2
G-14-080 2
G-09-232 6
G-09-233 2 6
G-09-234 2 6
G-09-235 2
G-09-236 2 6
G-09-237 2
G-09-238 2
G-09-239 6
G-09-240 6
G-09-242 2 6
G-09-243 2 6
G-09-245 2
G-09-246 2 6
G-09-258 2
G-09-259 2
G-09-260 2 6
G-09-261 2 6
G-09-262 2 6
G-09-263 2 6
G-09-264 2 6
G-09-265 2 6
G-09-266 6
G-09-267 2
G-09-268 2 6
0408-0021 11 2
Wijcik McIntosh 11 5
Beauty of Bath 45 8
Priam 2 7
Northern Spy 4
Co-op 15 6 8
MN 1702 6 7
WA 2 2 4
WA 5 4 6
Pitmaston Pineapple 2 6
0411-0011 11 6
0411-0017 11 2
0411-0023 19 2
AE0250-086 4 6
AE0250-087 4
AE0250-089 2 6
AE0250-092 2 6
AE0250-093 2 4
AE0250-094 4
AE0250-095 4 6
Sonya 2 4
Co-op 38 2 4
AE0250-096 4 7
AE0250-327 4 7
Co-op 30 11 19
Jonagrimes 3 6
AE0211-036 5 6
G-07-039 6 7
PRI 14-152 4 5
PRI 47-176 5 7
G-07-041 2 7
BC-8S-27-43 2 4
AE0250-091 4 5
AE0250-097 5 7
AE0250-325 5 7
AE0250-326 5 7
AE0250-329 5 7
AE0250-333 4 5
AE0250-334 4 5
AE0250-335 4 5
AE0250-336 5 7
AE0250-338 4 5
AE0250-341 4 5
AE0211-038 2
AE0211-043 2
AE0211-045 2 5
AE0211-051 2 6
G-07-010 7
G-07-015 2 7
G-07-019 4 7
G-07-020 7
G-07-024 7
G-07-032 4 7
G-07-033 4 7
G-07-034 2 7
G-07-035 7
G-07-044 2 4
AE0211-053 6 7
AE0211-054 6 7
AE0250-088 4 6
AE0250-324 6 7
AE0250-328 4 7
AE0250-331 4 6
AE0250-332 6 7
AE0250-337 6 7
AE0250-339 4 7
Minnewashta 6 7
Autumn Crisp 4 6
G-14-066 2
Lu1-11-010 19 6
Lu1-11-013 5 6
Lu1-11-016 19 2
Lu1-11-017 2 5
Lu1-11-018 2 5
NJ 90 11 2
Lord Lambourne 19 7
Antonovka GH 56 57
Grimes Golden 2 3
Kidds Orange Red 19
Malus baccata Hansen #2 6 7
Malus baccata Jackii 7
Summerred 49 59
William's Pride 5 7
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-15-10Apple-RosBREED-3.9K-20191513.3215.06
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 23456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263
GDsnp00842BAABBAA--BBBB----BBBBBABB-BB--A--A---B-A---AAABBABBAABBAAABAAB
RosBREEDSNP_SNP_AG_2538403_Lg15_02844_MAF30_1675935_exon2AAAABAAAAAA-----BBABAA-ABAB------AAAABBAAAAAAABBAAABBAAAAABA--
RosBREEDSNP_SNP_CT_1872379_Lg15_RosCOS2766_MAF20_646072_exon1BBBBBAABBBA-BBBBBA----ABBBBBBAB--BBBABB---AAAABBBBAAABBABBBB--
RosBREEDSNP_SNP_CT_2337559_Lg15_325776_MAF50_325776_exon3BBABBAABAAA-BABBBBBBABABB-A---A--A-AAA-A---AAABABBABABABABAAAB
RosBREEDSNP_SNP_TC_1883712_Lg15_RosCOS2766_MAF10_MDP0000188904_exon1AAABAAAAABA-AAAAAAAABBAAAAB---ABAABBAAAAAAA--ABAABAAAAAAB--B--
RosBREEDSNP_SNP_TC_2558984_Lg15_02844_MAF40_1625529_exon6ABBAABAABAAAABABAAAAAAB---AA--B--A-ABA-BBA-BA-ABABBAABABAABBBA
Alignments
Feature NameTypeLocationAnalysis
Chr15 chromosome Chr15:5086578..5706804. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation