Mdo-HB-14-31

Haplotype Block Overview
Name Mdo-HB-14-31
Species Malus x domestica
Stock Haplotype [view all 428]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 3 4
Rome Beauty Law 5 7
Jonafree 7
Redfree 16 3
Spartan 5 7
Wagener 13 4
Worcester Pearmain 4
Tsugaru 3 4
Golden Delicious 3 4
Fuji 5
Empire 5 7
Gala 4 5
Honeycrisp 4
Elstar 3 4
Marshall McIntosh 3 7
Cripps Pink 4 5
Granny Smith 11 3
Jonathan 3 5
Ralls Janet 10 5
Delicious 5
Discovery 14 4
Prima 13 7
821 4 7
Fiesta 3 4
Ingrid Marie 3 4
Idared 3 4
Esopus Spitzenburg 3 5
Braeburn 5
Sansa 4
Lodi 4 7
James Grieve 4
Cripps Red 3 5
Burgundy 3 4
Akane 3 4
Ambrosia 4 5
Aurora Golden Gala 3 4
Beacon 4 5
Ben Davis 11 3 5 7
Cameo 3 5
Chinook 4 5
Clivia 3 4
Co-op 17 5 7
Co-op 18 7
Dayton 13 3 5 7
Delblush 11 4
Delcorf 4
Delorgue 3 4
Dolgo 15 4
Geheimrat Dr. Oldenburg 4 5
Duchess of Oldenburg 4 5
Early Cortland 7
Empress 4 7
F2 26829-2-2 7
Fantazja 3 5
Fireside 23 4
Fortune 3 4
Frostbite 3 4
Ginger Gold 4 7
GMAL 4327 16 5
GMAL 4328 16 5
GMAL 4329 13 16
GMAL 4332 13
Goodland 13 4
Haralson 5
Honeygold 4 5
Hudson 3 7
Jersey Black 27 7
Jonamac 3 7
Keepsake 4 7
Kerr 4 5
Lady Williams 11 5
Liberty 7
Linda 5
Liveland Raspberry 3 31
Longfield 4 5
Macoun 7
Malinda 4 5
Mantet 21 7
Melba 31 7
MN 1628 3 7
MN 1691 23 4
MN 1706 3 5
MN 1708 4 7
MN 1760 4
MN 1764 4 5
MN 1789 23 4
MN 1836 5 7
MN 1837 23 4
MN 1839 3 4
MN 1888 4
MN 1899 4 5
MN 1940 4 7
MN 2016 4 5
AA-44 3 4
Monroe 3 5
Montgomery 4 5
Nicola 4 5
NJ 31 7
NJ 53 13
Oriole 3 4
PRI 14-126 4 7
PRI 14-510 4 7
PRI 16-144 7
PRI 1661-2 5 7
PRI 54-12 5 7
PRI 855-102 7
Primula 31 7
Raritan 4 5
Regent 5 7
Russian Seedling 13 35
Sawa 3 7
Sciros 4 5
Sharon 3 4
Silken 13 4
Wildung 23 3
Splendour 3 5
State Fair 5 7
NJ 55 3 7
Co-op 29 4 7
Sunrise 13 3
Sweet Sixteen 3 4
Topaz 4 5
Vista Bella 13 4
Wealthy 4 5
Winesap 11 5
Winter Banana 3 4
Yellow Newtown 3
Yellow Transparent 5 7
0407-0001 3 4
0407-0005 3 4
0407-0006 3 4
0407-0007 3 4
0407-0008 3
0408-0003 4 7
0408-0004 3
0408-0005 3 7
0408-0007 3 7
0408-0008 3 7
0408-0010 4 7
0408-0011 3
0408-0014 3
0408-0015 3 4
0409-0022 4
0409-0024 4
0409-0028 4
0409-0030 3 4
0409-0032 4
0409-0035 4
0409-0036 3 4
0409-0038 3 4
0409-0039 4
0409-0040 3 4
0409-0043 3 4
0409-0045 3 4
0410-0002 11 3
0410-0003 11 4
0410-0005 3
0410-0006 11 3
0410-0010 11 4
0410-0011 11 3
0410-0012 3 4
0410-0013 11 4
0410-0015 3
0410-0017 11 4
0410-0018 11 4
0414-0010 3 4
0414-0015 3 4
0414-0017 3 4
0414-0018 4 7
0414-0019 3 4
0414-0020 3 4
0414-0021 3 4
0415-0001 4 7
0415-0004 4 7
0415-0005 3 4
0415-0011 3 4
0415-0012 4 7
0415-0013 3 4
0415-0014 4
0415-0016 3 4
0415-0017 4 7
0415-0019 4 7
0415-0020 4 7
0415-0025 3 4
AE_HCxJonf-145 4 7
AE_HCXJonf-148 4 7
AE_HCxJonf-157 4 7
AE_HCXJonf-162 4 7
AE_HCXJonf-168 4 7
AE_HCxJonf-175 4 7
AE_HCxJonf-183 4 7
AE_HCxJonf-185 4 7
AE0118-237 4 7
AE0118-238 4 5
AE0118-239 4
AE0118-240 4 5
AE0118-243 4 5
AE0118-244 4 7
AE0118-245 4 7
AE0118-246 4 5
AE0118-249 4 7
AE0206-159 5
AE0206-160 5
AE0206-161 3 4
AE0206-162 4 5
AE0206-163 5
AE0206-164 4 5
AE0206-165 3 5
AE0206-167 3 5
AE0206-168 4 5
AE0206-169 5
AE0206-170 3 4
AE0210-146 13 3
AE0210-147 13 3
AE0210-149 16 3
AE0210-150 13
AE0210-151 13
AE0210-152 3 4
AE0210-153 13 3
AE0210-154 16 3
AE0210-157 13 16
AE0210-158 16 3
AE0210-159 13 3
AE0210-162 13 3
AE0210-163 13
AE0210-164 13
AE0210-165 13
AE0210-166 13 16
AE0210-168 16 3
AE0210-169 16 3
AE0210-170 16 3
AE0210-171 13 16
AE0210-172 16 3
AE0210-173 13 3
AE0210-174 13 3
AE0213-175 13 4
AE0213-176 13 4
AE0213-177 13 7
AE0213-178 13 4
AE0213-179 13 4
AE0213-180 13 7
AE0213-181 13 7
AE0213-182 13 7
AE0213-183 13 4
AE0213-186 13 7
AE0213-187 13 4
AE0213-190 13 4
AE0213-193 13 7
AE0213-194 13 7
AE0213-195 13 7
AE0213-196 13 4
AE0213-197 13 7
AE0213-198 11 7
AE0213-199 13 4
AE0213-200 13 4
AE0213-201 13 7
AE0213-202 13 4
AE0213-205 13 7
AE0213-206 13 7
AE0251-323 3 4
AE0251-327 3 4
AE0251-329 3 5
AE0251-330 3 5
AE0251-331 3 4
AE0251-342 3 4
AE0251-343 3 5
AE0406-239 13 4
AE0406-254 13 4
AE0406-258 13 4
AE0406-259 13 4
AE0406-263 13 4
AE0406-264 4
AE0406-266 4
AE0406-271 4
AE0406-274 13 4
AE0406-278 13 4
AE0406-281 4
AE0406-286 13 4
AE0406-288 4
AE0406-289 13 4
AE0406-294 4
AE0406-298 13 4
Minneiska 4
NJ 303955 7
PRI 612-1 5 7
Arlet 3 4
Co-op 39 13 34
Pinova 3 4
Scired 3 4
Scifresh 4 5
0409-0025 3 4
0409-0026 4
0409-0027 3 4
0409-0031 4
0409-0033 3 4
0409-0047 3 4
G-14-050 3 5
G-14-052 4 5
G-14-054 3 5
G-14-055 3 5
G-14-056 4 5
G-14-057 3 5
G-14-059 3 5
G-14-060 3 5
G-14-061 4 5
G-14-062 3 5
G-14-064 4 5
G-14-065 4 5
G-14-069 4 5
G-14-067 3 5
G-14-068 3 5
G-14-071 4 5
G-14-073 4 5
G-14-074 4 5
G-14-075 3 5
G-14-076 3 5
G-14-077 4 5
G-14-078 4 5
G-14-080 4 5
G-09-232 4 5
G-09-233 4 5
G-09-234 4 5
G-09-235 4 5
G-09-236 5 7
G-09-237 4 5
G-09-238 4 5
G-09-239 5 7
G-09-240 5 7
G-09-241 5 7
G-09-242 4 5
G-09-243 5 7
G-09-245 4 5
G-09-246 5 7
G-09-258 4 5
G-09-259 5 7
G-09-260 5 7
G-09-261 4 5
G-09-262 5 7
G-09-263 5 7
G-09-264 5 7
G-09-265 5 7
G-09-266 4 5
G-09-267 5 7
G-09-268 4 5
0408-0021 3 4
Wijcik McIntosh 12 4
Beauty of Bath 14
Priam 5 7
Northern Spy 3 7
Co-op 15 4 5
MN 1702 23 4
WA 2 3 5
WA 5 3 5
Pitmaston Pineapple 3 5
0411-0011 3 4
0411-0017 4 7
0411-0023 3 4
AE0250-086 3 5
AE0250-087 3 4
AE0250-089 4 5
AE0250-090 3 4
AE0250-092 3 4
AE0250-093 3 5
AE0250-094 3 4
AE0250-095 4 5
Sonya 5
Co-op 38 4 7
AE0250-096 23 3
AE0250-327 3 4
Co-op 30 3 7
Jonagrimes 3 4
AE0211-036 4
G-07-039 4 7
PRI 14-152 4 7
G-07-041 4 5
BC-8S-27-43 3 5
AE0250-091 16 4
AE0250-097 4 5
AE0250-325 16 4
AE0250-326 4 5
AE0250-329 4 5
AE0250-333 4 5
AE0250-334 16 4
AE0250-335 4 5
AE0250-336 16 4
AE0250-338 16 4
AE0250-341 16 4
AE0211-038 4 5
AE0211-043 4 5
AE0211-045 16 4
AE0211-051 16 7
G-07-010 3 4
G-07-014 3 4
G-07-015 11 4
G-07-019 3 4
G-07-020 11 4
G-07-024 3 4
G-07-032 3 4
G-07-033 3 4
G-07-034 11 4
G-07-035 3 4
G-07-044 11 4
AE0211-053 5 7
AE0211-054 4 7
AE0250-088 4 5
AE0250-324 4
AE0250-328 4 5
AE0250-331 4
AE0250-332 4
AE0250-337 4
AE0250-339 4 5
Minnewashta 4 5
Autumn Crisp 4 5
G-14-066 3 5
Lu1-11-010 5 7
Lu1-11-013 5 7
Lu1-11-016 5 7
Lu1-11-017 5 7
Lu1-11-018 5 7
NJ 90 12 7
Lord Lambourne 4
Antonovka GH 4 5
Grimes Golden 3
Kidds Orange Red 4 5
Malus baccata Hansen #2 4 7
Malus baccata Jackii 4
Summerred 36 4
William's Pride 4 7
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-14-31Apple-RosBREED-3.9K-20191449.0249.02
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 234567891011121314151617181920212223242526272829303132333435363738
RosBREEDSNP_SNP_AG_27501379_Lg14_01213_MAF20_1671025_exon2-AAAAB---ABBAAABABB--B----AABBAAABA--
RosBREEDSNP_SNP_CT_27509563_Lg14_01213_MAF20_1639558_exon3BBBBBAABAAABBBBABAABAB-BBBB--B--AA---
RosBREEDSNP_SNP_CT_27520621_Lg14_00052_MAF40_1668380_exon1-BBABBBA-BBB--A--B---BBBA-A---ABAABAB
RosBREEDSNP_SNP_TC_27605568_Lg14_00052_MAF50_821974_exon1AABA-BBABBABBAB---B--A-BBB---BBBABAAB
Alignments
Feature NameTypeLocationAnalysis
Chr14 chromosome Chr14:26497761..30625795. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation