Mdo-HB-13-6

Haplotype Block Overview
Name Mdo-HB-13-6
Species Malus x domestica
Stock Haplotype [view all 430]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 3 5
Rome Beauty Law 3 5
Jonafree 3 6
Redfree 10 3
Spartan 3 4
Wagener 4 5
Worcester Pearmain 10 6
Tsugaru 3
Golden Delicious 3 4
Fuji 10 3
Empire 3 4
Gala 4 5
Honeycrisp 3 6
Elstar 4 5
Marshall McIntosh 10 3
Cripps Pink 3 4
Granny Smith 4
Jonathan 10 3
Ralls Janet 10 9
Delicious 3 4
Discovery 10
Prima 10 3
821 15
Fiesta 5
Ingrid Marie 4 5
Idared 10 5
Esopus Spitzenburg 3
Braeburn 3 5
Sansa 3 4
Lodi 13 3
James Grieve 4 5
Cripps Red 3 4
Burgundy 3
Akane 3 6
Ambrosia 3 4
Aurora Golden Gala 4
Beacon 3
Ben Davis 3 4 6
Cameo 3 4
Chinook 4 5
Clivia 10 5
Co-op 17 3 5
Co-op 18 10 31
Dayton 10 3
Delblush 3 4
Delcorf 4
Delorgue 4 6
Dolgo 29 3
Geheimrat Dr. Oldenburg 10 13
Duchess of Oldenburg 3 4
Early Cortland 10 3
Empress 10
F2 26829-2-2 3
Fantazja 10 3
Fireside 3
Fortune 4 5
Frostbite 3 5
Ginger Gold 3 4
GMAL 4327 21 4
GMAL 4328 21 4
GMAL 4329 3 4
GMAL 4332 3 4
Goodland 10 3
Haralson 3
Honeygold 3 4
Hudson 4 6
Jersey Black 10 9
Jonamac 10 3
Keepsake 5 6
Kerr 3
Lady Williams 4
Liberty 3
Linda 10 3
Longfield 4
Macoun 10 3
Malinda 10 3
Melba 10 4
MN 1627 3 4
MN 1628 3
MN 1691 3
MN 1706 10 3
MN 1708 3 5
MN 1760 3
MN 1764 3
MN 1789 3 4
MN 1802 10 4
MN 1836 3 5
MN 1837 3 4
MN 1839 3 4
MN 1888 3 4
MN 1899 3 5
MN 1940 10 3
MN 2016 3 5
AA-44 10 4
Monroe 3
Montgomery 3 4
Nicola 4
NJ 31 3 6
NJ 53 10
Oriole 3 4
PRI 14-126 3
PRI 14-510 3 4
PRI 16-144 3
PRI 1661-2 3
PRI 54-12 3
PRI 855-102 3
Primula 10 3
Raritan 10
Regent 3
Russian Seedling 3
Sawa 10
Sciros 3 4
Sharon 10 4
Silken 3
Wildung 3 4
Splendour 3 4
State Fair 3
NJ 55 4 5
Co-op 29 3 5
Sunrise 10 3
Sweet Sixteen 5 6
Topaz 3 4
Vista Bella 10
Wealthy 3
Winesap 4
Winter Banana 4 5
Yellow Newtown 34 35
Yellow Transparent 13 3
0407-0001 4 5
0407-0005 4 5
0407-0006 4
0407-0007 4
0407-0008 4
0408-0003 3 4
0408-0004 3 4
0408-0005 3 4
0408-0007 3 4
0408-0008 3 4
0408-0010 3 4
0408-0011 3 4
0408-0014 3 4
0408-0015 3 4
0409-0022 3 4
0409-0024 3 4
0409-0028 3 4
0409-0030 3 4
0409-0032 3 4
0409-0035 3 4
0409-0036 4 6
0409-0038 4 6
0409-0039 3 4
0409-0040 4 6
0409-0043 4 6
0409-0045 3 4
0410-0002 4
0410-0003 4
0410-0005 4
0410-0006 4
0410-0010 4
0410-0011 4
0410-0012 4
0410-0013 4
0410-0015 4
0410-0017 4
0410-0018 4
0414-0010 3 4
0414-0015 4 6
0414-0017 3 4
0414-0018 3
0414-0019 5 6
0414-0020 3
0414-0021 3 5
0415-0001 3
0415-0004 3
0415-0005 3
0415-0011 3
0415-0012 3 6
0415-0013 3
0415-0014 3 5
0415-0016 3
0415-0017 3
0415-0019 3
0415-0020 3 6
0415-0025 3
AE_HCxJonf-145 6
AE_HCXJonf-148 3
AE_HCxJonf-157 3
AE_HCXJonf-162 6
AE_HCXJonf-168 3
AE_HCxJonf-175 3 6
AE_HCxJonf-183 6
AE_HCxJonf-185 6
AE0118-237 3
AE0118-238 3
AE0118-239 3 6
AE0118-240 3
AE0118-243 3 6
AE0118-244 3
AE0118-245 3 6
AE0118-246 3 6
AE0118-249 3 6
AE0206-159 3 5
AE0206-160 3 5
AE0206-161 3 4
AE0206-162 3 4
AE0206-163 3 5
AE0206-164 3 5
AE0206-165 3 5
AE0206-167 3 5
AE0206-168 3 4
AE0206-169 3 5
AE0206-170 3 5
AE0210-146 3
AE0210-147 3 4
AE0210-149 3 4
AE0210-150 10 4
AE0210-151 3 4
AE0210-152 3
AE0210-153 3 4
AE0210-154 3 4
AE0210-157 10 4
AE0210-158 3
AE0210-159 3 4
AE0210-162 3
AE0210-163 3
AE0210-164 3 4
AE0210-165 10 4
AE0210-166 10 3
AE0210-168 10 3
AE0210-169 10 3
AE0210-170 10 3
AE0210-171 3 4
AE0210-172 3
AE0210-173 10 3
AE0210-174 3
AE0213-175 3 4
AE0213-176 3
AE0213-177 3 4
AE0213-178 3 4
AE0213-179 3 4
AE0213-180 3 4
AE0213-181 3 4
AE0213-182 3 4
AE0213-183 3
AE0213-186 4
AE0213-187 3 4
AE0213-190 4
AE0213-193 3
AE0213-194 3
AE0213-195 3 4
AE0213-196 3 4
AE0213-197 3 4
AE0213-198 3 4
AE0213-199 3 4
AE0213-200 4
AE0213-201 3 4
AE0213-202 4
AE0213-205 3 4
AE0213-206 3
AE0251-323 4 6
AE0251-325 4 5
AE0251-327 4 5
AE0251-329 5 6
AE0251-330 5 6
AE0251-331 4 5
AE0251-342 4 6
AE0251-343 4 6
AE0406-239 3 6
AE0406-254 3
AE0406-258 3 6
AE0406-259 3 6
AE0406-263 3 6
AE0406-264 3 6
AE0406-266 3 6
AE0406-271 3
AE0406-274 3
AE0406-278 3
AE0406-281 3 6
AE0406-286 3 6
AE0406-288 3 6
AE0406-289 3 6
AE0406-294 3
AE0406-298 3
Minneiska 3 6
NJ 303955 5
PRI 612-1 3 4
Arlet 4 5
Co-op 39 10 3
Pinova 3 5
Scired 4 5
Scifresh 4 5
0409-0025 3 4
0409-0026 3 4
0409-0027 4 6
0409-0031 3 4
0409-0033 3 4
0409-0047 3 4
G-14-050 10 5
G-14-052 10 3
G-14-054 10 5
G-14-055 10 5
G-14-056 10 5
G-14-057 10 3
G-14-059 10 5
G-14-060 3 5
G-14-061 3
G-14-062 3 5
G-14-064 10 5
G-14-065 3 5
G-14-069 10 3
G-14-067 10 5
G-14-068 10 5
G-14-071 10 5
G-14-073 10 5
G-14-074 3
G-14-075 10 5
G-14-076 3 5
G-14-077 10 3
G-14-078 10 3
G-14-080 10 5
G-09-232 3 5
G-09-233 4 5
G-09-234 3
G-09-235 3 4
G-09-236 3
G-09-237 3 4
G-09-238 3 4
G-09-239 3 5
G-09-240 3
G-09-241 3
G-09-242 3 5
G-09-243 3
G-09-245 3 5
G-09-246 3 4
G-09-258 3 5
G-09-259 4 5
G-09-260 4 5
G-09-261 3 4
G-09-262 4 5
G-09-263 3
G-09-264 3 5
G-09-265 4 5
G-09-266 4 5
G-09-267 3
G-09-268 3 5
0408-0021 3 4
Wijcik McIntosh 10 3
Beauty of Bath 10 3
Priam 3
Northern Spy 3 6
Co-op 15 3
MN 1702 3 5
WA 2 4
WA 5 3
Pitmaston Pineapple 4 5
0411-0011 3 4
0411-0017 3 5
0411-0023 3 4
AE0250-086 5 6
AE0250-087 5
AE0250-089 5
AE0250-090 5
AE0250-092 4 6
AE0250-093 5 6
AE0250-094 5 6
AE0250-095 4 6
Sonya 5
Co-op 38 4 5
AE0250-096 10 3
AE0250-327 3
Co-op 30 3
Jonagrimes 3 4
AE0211-036 3 4
G-07-039 3 4
PRI 14-152 3
PRI 47-176 10 3
G-07-041 3
BC-8S-27-43 4 5
AE0250-091 21 6
AE0250-097 3 4
AE0250-325 3 4
AE0250-326 21 6
AE0250-329 21 3
AE0250-333 4 6
AE0250-334 4 6
AE0250-335 21 6
AE0250-336 21 3
AE0250-338 21 3
AE0250-341 3 4
AE0211-038 21 4
AE0211-043 3 4
AE0211-045 4
AE0211-051 4
G-07-010 3 4
G-07-014 3 4
G-07-015 3 4
G-07-019 4
G-07-020 4
G-07-024 3 4
G-07-032 3 4
G-07-033 3 4
G-07-034 3 4
G-07-035 4
G-07-044 4
AE0211-053 3 4
AE0211-054 3
AE0250-088 3 6
AE0250-324 3
AE0250-328 3 6
AE0250-331 3
AE0250-332 3 6
AE0250-337 3
AE0250-339 3
Minnewashta 3
Autumn Crisp 3
G-14-066 3 5
Lu1-11-010 10 3
Lu1-11-013 10 4
Lu1-11-016 10 3
Lu1-11-017 10 4
Lu1-11-018 10 4
NJ 90 3
Lord Lambourne 10 4
Antonovka GH 10 13
Grimes Golden 3
Kidds Orange Red 3 5
Malus baccata Hansen #2 3 4
Malus baccata Jackii 13
Summerred 3 4
William's Pride 10 4
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-13-6Apple-RosBREED-3.9K-2019135.525.52
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 23456789101112131415161718192021222324252627282930313233343536
GDsnp00098AABBBBBBBBABABBAB-BA-B-B---B-AABBA-
RosBREEDSNP_SNP_AG_2180685_Lg13_00098_MAF20_1650031_exon1-AABA---AAAB--AABABB--A-A--BAAAABAB
RosBREEDSNP_SNP_GA_2217552_Lg13_00098_MAF10_225571_exon1BBBAABBAB--B--BB-BABBABB-BABBAA-ABA
RosBREEDSNP_SNP_GT_2194655_Lg13_00098_MAF30_MDP0000188704_exon3-BAAAA--BABB----A--B-ABB-BA-AABBBA-
Alignments
Feature NameTypeLocationAnalysis
Chr13 chromosome Chr13:2539726..2752942. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation