Mdo-HB-13-26

Haplotype Block Overview
Name Mdo-HB-13-26
Species Malus x domestica
Stock Haplotype [view all 426]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 4
Rome Beauty Law 5 6
Jonafree 4
Redfree 6
Spartan 4 6
Wagener 5 6
Worcester Pearmain 4
Tsugaru 4 5
Golden Delicious 4 5
Fuji 4 7
Empire 6 7
Gala 4 5
Honeycrisp 4
Elstar 4
Marshall McIntosh 4 6
Cripps Pink 4
Granny Smith 4 6
Jonathan 4 5
Ralls Janet 4
Delicious 4 7
Discovery 14 4
Prima 4
821 4
Fiesta 4 6
Ingrid Marie 4
Idared 4 6
Esopus Spitzenburg 4 5
Braeburn 4 7
Sansa 5
Lodi 6
James Grieve 4
Cripps Red 4
Burgundy 6
Akane 4 5
Ambrosia 4 7
Aurora Golden Gala 5
Beacon 6
Ben Davis 5 6 7
Cameo 4 5
Chinook 4 7
Clivia 4 5
Co-op 17 4 5
Co-op 18 4
Dayton 4 5 6
Delblush 5 6
Delorgue 4 5
Dolgo 4 6
Geheimrat Dr. Oldenburg 4 5
Duchess of Oldenburg 4
Early Cortland 4 6 7
Empress 6
F2 26829-2-2 4 7
Fantazja 5 6
Fireside 4 6
Fortune 6 7
Frostbite 4 6
Ginger Gold 5 6
GMAL 4327 4 5
GMAL 4328 4
GMAL 4329 4 5
GMAL 4332 4 5
Goodland 5 6
Haralson 4 6
Honeygold 4 5
Hudson 4 7
Jersey Black 4
Jonamac 4 6
Keepsake 4
Kerr 4
Lady Williams 4
Liberty 4 6
Linda 4 5
Longfield 4 6
Macoun 4 6
Malinda 5 6
Mantet 4
Melba 4 6
MN 1627 4 5
MN 1628 4
MN 1691 4 6
MN 1706 4
MN 1708 4
MN 1760 5
MN 1764 4 5
MN 1789 4 6
MN 1802 4 6
MN 1836 4 6
MN 1837 5 6
MN 1839 5 6
MN 1888 4 5
MN 1899 6
MN 1940 6
MN 2016 4 6
AA-44 4 5
Monroe 5 6
Montgomery 6 7
Nicola 4 5
NJ 31 4
NJ 53 4
Oriole 5 6
PRI 14-126 4
PRI 16-144 4
PRI 1661-2 4 6
PRI 855-102 4
Primula 4 6
Raritan 6
Regent 6
Russian Seedling 4
Sawa 5 6
Sciros 5 7
Sharon 4
Silken 4 5
Wildung 4 6
Splendour 5 7
State Fair 4 6
NJ 55 4 5
Co-op 29 4 7
Sunrise 5 6
Sweet Sixteen 4 6
Topaz 4
Vista Bella 4 6
Wealthy 4 5
Winesap 4 6
Winter Banana 7 9
Yellow Newtown 5
Yellow Transparent 4 6
0407-0001 5 6
0407-0005 5 6
0407-0006 5
0407-0007 5
0407-0008 5
0408-0003 4 5
0408-0004 4 5
0408-0005 4 5
0408-0007 4 5
0408-0008 4 5
0408-0010 4 5
0408-0011 4 5
0408-0014 4 5
0408-0015 4 5
0409-0022 4 5
0409-0024 4 5
0409-0028 4 5
0409-0030 4 5
0409-0032 4 5
0409-0035 4 5
0409-0036 4 5
0409-0038 4 5
0409-0039 4 5
0409-0040 4 5
0409-0043 4 5
0409-0045 4 5
0410-0002 4 5
0410-0003 5 6
0410-0005 5 6
0410-0006 4 5
0410-0010 4 5
0410-0011 5 6
0410-0012 5 6
0410-0013 5 6
0410-0015 5 6
0410-0017 4 5
0410-0018 4 5
0414-0010 4 5
0414-0015 4 5
0414-0017 4 5
0414-0018 4
0414-0019 4 5
0414-0020 4
0414-0021 4 6
0415-0001 4
0415-0004 4
0415-0005 4
0415-0011 4
0415-0012 4
0415-0013 4
0415-0014 4
0415-0016 4
0415-0017 4
0415-0019 4
0415-0020 4
0415-0025 4
AE_HCxJonf-145 4
AE_HCXJonf-148 4
AE_HCxJonf-157 4
AE_HCXJonf-162 4
AE_HCXJonf-168 4 5
AE_HCxJonf-175 4
AE_HCxJonf-183 4
AE_HCxJonf-185 4
AE0118-237 4 6
AE0118-238 4 6
AE0118-239 4 5
AE0118-240 4 6
AE0118-243 4 6
AE0118-244 4 6
AE0118-245 4 6
AE0118-246 4 6
AE0118-249 4 6
AE0206-159 4 5
AE0206-160 4 5
AE0206-161 5 6
AE0206-162 5 6
AE0206-163 4
AE0206-164 4 6
AE0206-165 5 6
AE0206-167 5 6
AE0206-168 4 5
AE0206-169 4
AE0206-170 4 5
AE0210-146 4 6
AE0210-147 5 6
AE0210-149 4 5
AE0210-150 4 5
AE0210-151 5 6
AE0210-152 4 6
AE0210-153 5 6
AE0210-154 4 6
AE0210-157 4 6
AE0210-158 4 5
AE0210-159 4 6
AE0210-162 4 6
AE0210-163 5 6
AE0210-164 5
AE0210-165 5
AE0210-166 5 6
AE0210-168 4 6
AE0210-169 4 6
AE0210-170 5
AE0210-171 5
AE0210-172 4 5
AE0210-173 5
AE0210-174 5 6
AE0213-175 5 6
AE0213-176 4 6
AE0213-177 5 6
AE0213-178 5
AE0213-179 4 5
AE0213-180 4 6
AE0213-181 5 6
AE0213-182 5
AE0213-183 5
AE0213-186 4 6
AE0213-187 4 5
AE0213-190 4 6
AE0213-193 4 6
AE0213-194 4 6
AE0213-195 5
AE0213-196 5
AE0213-197 4 6
AE0213-198 4 5
AE0213-199 4 6
AE0213-200 4 6
AE0213-201 4 6
AE0213-202 4 5
AE0213-205 4 6
AE0213-206 5 6
AE0251-323 4 5
AE0251-325 4 5
AE0251-327 4 6
AE0251-329 4 5
AE0251-330 4
AE0251-331 5 6
AE0251-342 5 6
AE0251-343 4
AE0406-239 4
AE0406-254 4
AE0406-258 4 5
AE0406-259 4 5
AE0406-263 4 5
AE0406-264 4 5
AE0406-266 4 5
AE0406-271 4
AE0406-274 4 5
AE0406-278 4 5
AE0406-281 4
AE0406-286 4
AE0406-288 4 5
AE0406-289 4
AE0406-294 4 5
AE0406-298 4 5
Minneiska 4 6
NJ 303955 4
PRI 612-1 4 7
Arlet 5 6
Co-op 39 4 9
Pinova 4
Scired 4 5
Scifresh 4
0409-0025 4 5
0409-0026 4 5
0409-0027 4 5
0409-0031 4 5
0409-0033 4 5
0409-0047 4 5
G-14-050 4
G-14-052 4 7
G-14-054 4 7
G-14-055 4 7
G-14-056 4
G-14-057 4 7
G-14-059 4 7
G-14-060 4
G-14-061 4 7
G-14-062 4 7
G-14-064 4
G-14-065 4
G-14-069 4 7
G-14-067 4 7
G-14-068 4 7
G-14-071 4 7
G-14-073 4 7
G-14-074 4
G-14-075 4
G-14-076 4 7
G-14-077 4 7
G-14-078 4 7
G-14-080 4 7
G-09-232 4 5
G-09-233 4 6
G-09-234 6 7
G-09-235 4 5
G-09-236 6 7
G-09-237 4 6
G-09-238 4 5
G-09-239 5 7
G-09-240 6 7
G-09-241 5 7
G-09-242 6 7
G-09-243 5 7
G-09-245 4 6
G-09-246 6 7
G-09-258 4 5
G-09-259 5 7
G-09-260 4 6
G-09-261 4 5
G-09-262 4 5
G-09-263 6 7
G-09-264 4 6
G-09-265 4 6
G-09-266 4 5
G-09-267 6 7
G-09-268 4 5
0408-0021 4 5
Wijcik McIntosh 4 6
Beauty of Bath 14
Priam 4 5
Northern Spy 4
Co-op 15 4 6
MN 1702 6
WA 2 4 5
WA 5 6 7
Pitmaston Pineapple 5 6
0411-0011 4 6
0411-0017 4 6
0411-0023 4 5
AE0250-086 4 6
AE0250-087 4 6
AE0250-089 4
AE0250-090 4 5
AE0250-092 4 5
AE0250-093 5 6
AE0250-094 4
AE0250-095 4
Sonya 4
Co-op 38 5
AE0250-096 5 6
AE0250-327 4
Co-op 30 4
Jonagrimes 17 4
AE0211-036 4 5
G-07-039 5 6
G-07-041 5 7
BC-8S-27-43 4 5
AE0250-091 4
AE0250-097 4 5
AE0250-325 4 5
AE0250-326 4 5
AE0250-329 4
AE0250-333 4
AE0250-334 4 5
AE0250-335 4
AE0250-336 4
AE0250-338 4
AE0250-341 4
AE0211-038 4 6
AE0211-043 4 5
AE0211-045 4 5
AE0211-051 4 6
G-07-010 5 6
G-07-014 5 6
G-07-015 5 6
G-07-019 4 5
G-07-020 4 5
G-07-024 5 6
G-07-032 4 5
G-07-033 5 6
G-07-034 5 6
G-07-035 5 6
G-07-044 5 6
AE0211-053 4 5
AE0211-054 4 6
AE0250-088 4
AE0250-324 4 6
AE0250-328 4
AE0250-331 4
AE0250-332 4
AE0250-337 4
AE0250-339 4
Minnewashta 4 6
Autumn Crisp 4 6
G-14-066 4
Lu1-11-010 4
Lu1-11-013 4
Lu1-11-016 4
Lu1-11-017 4
Lu1-11-018 4
NJ 90 4 6
Lord Lambourne 4
Antonovka GH 4
Grimes Golden 17 4
Kidds Orange Red 4 7
Malus baccata Hansen #2 4
Malus baccata Jackii 4
Summerred 17 4
William's Pride 5 6
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-13-26Apple-RosBREED-3.9K-20191334.8134.97
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 234567891011121314151617181920
GDsnp01776BABABBBA-B--B--ABB-
RosBREEDSNP_SNP_AC_14440697_Lg13_01776_MAF20_1680494_exon1--AABAAB-BAB-AAAB-B
RosBREEDSNP_SNP_GA_12934588_Lg13_MDP0000226405_MAF20_MDP0000226405_exon1--BBBA-BBABBBA---A-
Alignments
Feature NameTypeLocationAnalysis
Chr13 chromosome Chr13:11403266..11636135. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation