Mdo-HB-13-25

Haplotype Block Overview
Name Mdo-HB-13-25
Species Malus x domestica
Stock Haplotype [view all 429]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 4 5
Rome Beauty Law 12 7
Jonafree 4
Redfree 7
Spartan 7
Wagener 4 7
Worcester Pearmain 4 7
Tsugaru 4
Golden Delicious 4
Fuji 4 5
Empire 4 7
Gala 4 5
Honeycrisp 4 5
Elstar 4
Marshall McIntosh 4 7
Cripps Pink 4 5
Granny Smith 11 5
Jonathan 4
Ralls Janet 10 5
Delicious 4 7
Discovery 15 7
Prima 4 7
821 11
Fiesta 5 7
Ingrid Marie 4
Idared 4 7
Esopus Spitzenburg 15 4
Braeburn 4 5
Sansa 4
Lodi 7
James Grieve 4 5
Cripps Red 4 5
Burgundy 7
Akane 4
Ambrosia 4
Aurora Golden Gala 4
Beacon 7
Ben Davis 11 4 5
Cameo 4 7
Chinook 4 5
Clivia 4 5
Co-op 17 11 4
Co-op 18 4
Dayton 4 7
Delblush 4
Delorgue 12 4
Dolgo 11 5
Geheimrat Dr. Oldenburg 4 5
Duchess of Oldenburg 4 5
Early Cortland 4 5 7
Empress 7
F2 26829-2-2 11 5
Fantazja 4 7
Fireside 5 7
Fortune 4 5
Frostbite 5 7
Ginger Gold 4 7
GMAL 4327 4 5
GMAL 4328 15 5
GMAL 4329 4 5
GMAL 4332 15 4
Goodland 12 7
Haralson 5 7
Honeygold 4 5
Hudson 4 7
Jersey Black 4 9
Jonamac 4 7
Keepsake 5 7
Kerr 5
Lady Williams 5
Liberty 5 7
Linda 4 5
Liveland Raspberry 5 7
Longfield 35 4
Macoun 4 7
Malinda 4 7
Mantet 4
Melba 5 7
Melrose 4
MN 1627 4
MN 1628 5 7
MN 1691 5 7
MN 1706 20 21
MN 1708 4 7
MN 1760 4
MN 1764 4 7
MN 1789 4 7
MN 1802 7
MN 1836 7
MN 1837 4 7
MN 1839 4 7
MN 1888 4 5
MN 1899 7
MN 1940 7
MN 2016 4 7
AA-44 4
Monroe 4 7
Montgomery 5 7
Nicola 4 5
NJ 31 4
NJ 53 4 5
Oriole 4 7
PRI 14-126 11 4
PRI 14-510 4 5
PRI 16-144 4
PRI 1661-2 4 7
PRI 54-12 5
PRI 855-102 4
Primula 4 7
Raritan 32 33
Regent 7
Russian Seedling 15 4
Sawa 4 7
Sciros 4
Sharon 4 5
Silken 4 5
Wildung 5 7
Splendour 4
State Fair 4 7
NJ 55 4 5
Co-op 29 4 5
Sunrise 4 7
Sweet Sixteen 7
Topaz 4 5
Vista Bella 5 7
Wealthy 4 5
Winesap 11 7
Winter Banana 4 5
Yellow Newtown 4
Yellow Transparent 5 7
0407-0001 4 7
0407-0005 4
0407-0006 4
0407-0007 4
0407-0008 4
0408-0003 4
0408-0004 4 7
0408-0005 4
0408-0007 4 7
0408-0008 4
0408-0010 4
0408-0011 4
0408-0014 4 7
0408-0015 4
0409-0022 4
0409-0024 4
0409-0028 4 5
0409-0030 4
0409-0032 4 5
0409-0035 4
0409-0036 4 5
0409-0038 4
0409-0039 4 5
0409-0040 4 5
0409-0043 4 5
0409-0045 4
0410-0002 4 5
0410-0003 11 4
0410-0005 11 4
0410-0006 4 5
0410-0010 4 5
0410-0011 11 4
0410-0012 11 4
0410-0013 11 4
0410-0015 11 4
0410-0017 4 5
0410-0018 4 5
0414-0010 4
0414-0015 4
0414-0017 4
0414-0018 4 7
0414-0019 4 5
0414-0020 4
0414-0021 4 7
0415-0001 4
0415-0004 4
0415-0005 4 5
0415-0011 5 7
0415-0012 4 5
0415-0013 4
0415-0014 4 5
0415-0016 4
0415-0017 4 5
0415-0019 4
0415-0020 4 5
0415-0025 4 5
AE_HCxJonf-145 4 5
AE_HCXJonf-148 4
AE_HCxJonf-157 4
AE_HCXJonf-162 4 5
AE_HCXJonf-168 4
AE_HCxJonf-175 4 5
AE_HCxJonf-183 4
AE_HCxJonf-185 4 5
AE0118-237 5 7
AE0118-238 4 7
AE0118-239 4 5
AE0118-240 4 7
AE0118-243 5 7
AE0118-244 4 7
AE0118-245 5 7
AE0118-246 5 7
AE0118-249 5 7
AE0206-159 4
AE0206-160 4
AE0206-161 4 7
AE0206-162 4 7
AE0206-163 4 5
AE0206-164 5 7
AE0206-165 4 7
AE0206-167 4 7
AE0206-168 4
AE0206-169 4 5
AE0206-170 4 5
AE0210-146 5 7
AE0210-147 4 7
AE0210-149 4 5
AE0210-150 4 5
AE0210-151 4 7
AE0210-152 4 7
AE0210-153 4 7
AE0210-154 4 7
AE0210-157 5 7
AE0210-158 4 5
AE0210-159 5 7
AE0210-162 5 7
AE0210-163 4 7
AE0210-164 4
AE0210-165 4
AE0210-166 4 7
AE0210-168 5 7
AE0210-169 5 7
AE0210-170 4
AE0210-171 4
AE0210-172 4 5
AE0210-173 4
AE0210-174 5 7
AE0213-175 15 7
AE0213-176 15 7
AE0213-177 4 7
AE0213-178 4
AE0213-179 15 4
AE0213-180 15 7
AE0213-181 4 7
AE0213-182 4
AE0213-183 4
AE0213-186 15 7
AE0213-190 15 7
AE0213-193 15 7
AE0213-194 15 7
AE0213-195 4
AE0213-196 4
AE0213-197 15 7
AE0213-198 4 5
AE0213-199 15 7
AE0213-201 15 7
AE0213-202 15 4
AE0213-205 15 7
AE0213-206 4 7
AE0251-323 4 7
AE0251-325 4 7
AE0251-327 5 7
AE0251-329 4 7
AE0251-330 5 7
AE0251-331 4 7
AE0251-342 4 7
AE0251-343 5 7
AE0406-239 5
AE0406-254 4 5
AE0406-258 4 5
AE0406-259 4 5
AE0406-263 4 5
AE0406-264 4
AE0406-266 4 5
AE0406-271 4 5
AE0406-274 4
AE0406-278 4
AE0406-281 5
AE0406-286 5
AE0406-288 4
AE0406-289 5
AE0406-294 4
AE0406-298 4 5
Minneiska 5 7
NJ 303955 5
PRI 612-1 4
Arlet 4 7
Co-op 39 12 30
Pinova 4 5
Scired 4 5
Scifresh 4 5
0409-0025 4
0409-0026 4
0409-0027 4
0409-0031 4 5
0409-0033 4
0409-0047 4
G-14-050 4 5
G-14-052 4 5
G-14-054 4 5
G-14-055 4 5
G-14-056 4 5
G-14-057 4 5
G-14-059 4 5
G-14-060 4 5
G-14-061 4 5
G-14-062 4
G-14-064 4 5
G-14-065 4 5
G-14-069 4 5
G-14-067 4 5
G-14-068 4 5
G-14-071 4 5
G-14-073 4 5
G-14-074 4 5
G-14-075 4 5
G-14-076 4 5
G-14-077 4 5
G-14-078 4
G-14-080 4 5
G-09-232 4 5
G-09-233 5 7
G-09-234 4 7
G-09-235 4 5
G-09-236 4 7
G-09-237 5 7
G-09-238 4 5
G-09-239 4
G-09-240 4 7
G-09-241 4
G-09-242 4 7
G-09-243 4
G-09-245 5 7
G-09-246 4 7
G-09-258 4 5
G-09-259 4 5
G-09-260 5 7
G-09-261 4 5
G-09-262 4 5
G-09-263 4 7
G-09-264 5 7
G-09-265 4 5
G-09-266 4 5
G-09-267 4 7
G-09-268 4 5
0408-0021 4
Wijcik McIntosh 19 32
Beauty of Bath 15 2
Priam 4
Northern Spy 4 7
Co-op 15 4 7
MN 1702 7
WA 2 4 5
WA 5 4 7
Pitmaston Pineapple 4 7
0411-0011 4 7
0411-0017 4 7
0411-0023 4
AE0250-086 5 7
AE0250-087 5 7
AE0250-089 5 7
AE0250-090 4 7
AE0250-092 4 7
AE0250-093 4 7
AE0250-094 5 7
AE0250-095 5 7
Sonya 5
Co-op 38 4
AE0250-096 4 7
AE0250-327 5 7
Co-op 30 4 7
Jonagrimes 3 5
AE0211-036 4 5
G-07-039 4 7
PRI 14-152 11 4
PRI 47-176 4 5
G-07-041 4
BC-8S-27-43 4 5
AE0250-091 5
AE0250-097 4
AE0250-325 4 5
AE0250-326 4
AE0250-329 5
AE0250-333 4 5
AE0250-334 4 5
AE0250-335 4 5
AE0250-336 4 5
AE0250-338 4 5
AE0250-341 5
AE0211-038 5 7
AE0211-043 4 5
AE0211-045 15 4
AE0211-051 5 7
G-07-010 11 4
G-07-014 11 4
G-07-015 11 4
G-07-019 4 5
G-07-020 4 5
G-07-024 11 4
G-07-032 4 5
G-07-033 11 4
G-07-034 11 4
G-07-035 11 4
G-07-044 11 4
AE0211-053 4
AE0211-054 4 7
AE0250-088 4 5
AE0250-324 4 7
AE0250-328 4 5
AE0250-331 4
AE0250-332 4
AE0250-337 4 5
AE0250-339 4
Minnewashta 4 7
Autumn Crisp 4 7
G-14-066 4 5
Lu1-11-010 5
Lu1-11-013 5
Lu1-11-016 4 5
Lu1-11-017 5
Lu1-11-018 5
NJ 90 4 7
Lord Lambourne 5 7
Antonovka GH 5
Grimes Golden 3 4
Kidds Orange Red 4 5
Malus baccata Hansen #2 12 21
Malus baccata Jackii 11 7
Summerred 4
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-13-25Apple-RosBREED-3.9K-20191333.3333.5
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 234567891011121314151617181920212223242526272829303132333435
RosBREEDSNP_SNP_AC_12134921_Lg13_RosCOS3331_MAF30_1659282_exon3--AAAB---BAB-AAAABAB--A--A-AB-ABBB
RosBREEDSNP_SNP_CA_12139342_Lg13_RosCOS3331_MAF40_1637840_exon4BBBA-BBAABBBBAABABBA-B-BAAABBABA-A
RosBREEDSNP_SNP_TC_12111151_Lg13_RosCOS3331_MAF20_MDP0000312326_exon9AAAAABBAAAA--AAABABAA-------BBBABB
RosBREEDSNP_SNP_TC_12127305_Lg13_RosCOS3331_MAF40_1650208_exon1ABAAABBABBBBBB--BAAB-A--AA--ABBABB
Alignments
Feature NameTypeLocationAnalysis
Chr13 chromosome Chr13:10623721..12241522. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation