Mdo-HB-13-21

Haplotype Block Overview
Name Mdo-HB-13-21
Species Malus x domestica
Stock Haplotype [view all 425]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 4
Rome Beauty Law 4 7
Jonafree 4
Redfree 51 52
Spartan 10 7
Wagener 22 5
Worcester Pearmain 4
Tsugaru 4
Golden Delicious 4 5
Fuji 4 5
Empire 5 7
Gala 4 5
Honeycrisp 4
Elstar 4 5
Marshall McIntosh 5 7
Cripps Pink 4 5
Granny Smith 5 6
Jonathan 4 7
Ralls Janet 3 4
Delicious 10 5
Discovery 4 5
Prima 4 7
821 13 15
Fiesta 22 4
Ingrid Marie 4
Idared 22 7
Esopus Spitzenburg 4 5
Braeburn 10 5
Sansa 4 5
Lodi 5 7
James Grieve 4 6
Cripps Red 4 5
Burgundy 7
Akane 4
Ambrosia 4 5
Aurora Golden Gala 5
Beacon 5
Ben Davis 4 5 7
Cameo 10 5
Chinook 4 5
Clivia 4 5
Co-op 17 15 5
Co-op 18 4
Dayton 15 4 7
Delblush 5
Delcorf 39 6
Delorgue 4 6
Dolgo 40 5
Geheimrat Dr. Oldenburg 5
Duchess of Oldenburg 4 6
Early Cortland 5 7
Empress 10 5
F2 26829-2-2 15 7
Fantazja 4 7
Fireside 4 5
Fortune 22 5
Frostbite 4 7
Ginger Gold 5
GMAL 4327 31 5
GMAL 4328 4 6
GMAL 4329 31 5
GMAL 4332 31 6
Goodland 4 5
Haralson 4 5
Honeygold 4 5
Hudson 5
Jersey Black 4
Jonamac 5 7
Keepsake 4 5
Kerr 4 5
Lady Williams 5
Liberty 4 7
Linda 4 5
Longfield 21 22
Macoun 4 7
Malinda 5
Melba 5 7
Melrose 4 5
MN 1627 4 5
MN 1628 5 7
MN 1691 4
MN 1706 43 44
MN 1708 4 5
MN 1760 4
MN 1764 4 5
MN 1789 4
MN 1802 5 7
MN 1836 5
MN 1837 4 5
MN 1839 5
MN 1888 4 5
MN 1899 4 5
MN 1940 4 5
MN 2016 22 4
AA-44 5 7
Monroe 4 7
Montgomery 4 5
NJ 31 4
NJ 53 4 7
Oriole 4 5
PRI 14-126 15 4
PRI 14-510 7
PRI 16-144 4
PRI 1661-2 4 7
PRI 855-102 4
Primula 4 7
Raritan 56 9
Regent 5 7
Russian Seedling 4 5
Sawa 4 7
Sciros 5
Sharon 5 6
Silken 4 7
Wildung 5 6
Splendour 5
State Fair 4 5
NJ 55 4 5
Co-op 29 22 4
Sunrise 5 7
Sweet Sixteen 4 5
Topaz 4
Vista Bella 10 4
Wealthy 4
Winter Banana 22 5
Yellow Newtown 5
Yellow Transparent 4 7
0407-0001 22 5
0407-0005 5
0407-0006 5
0407-0007 5
0407-0008 5
0408-0003 4 5
0408-0004 15 5
0408-0005 4 5
0408-0007 15 5
0408-0008 4 5
0408-0010 4 5
0408-0011 4 5
0408-0014 15 5
0408-0015 4 5
0409-0022 4 5
0409-0024 4 5
0409-0028 4 5
0409-0030 4 5
0409-0032 4 5
0409-0035 4 5
0409-0036 4 5
0409-0038 4 5
0409-0039 4 5
0409-0040 4 5
0409-0043 4 5
0409-0045 4 5
0410-0002 5
0410-0003 5 6
0410-0005 5 6
0410-0006 5 6
0410-0010 5
0410-0011 5 6
0410-0012 5 6
0410-0013 5 6
0410-0015 5 6
0410-0017 5
0410-0018 5
0414-0010 4 5
0414-0015 4 5
0414-0017 4 5
0414-0018 15 4
0414-0019 4 5
0414-0020 4
0414-0021 22 4
0415-0001 4
0415-0004 4
0415-0005 4
0415-0011 15 4
0415-0012 4
0415-0013 4
0415-0014 4
0415-0016 4
0415-0017 4
0415-0019 4
0415-0020 4
0415-0025 4
AE_HCxJonf-145 4
AE_HCXJonf-148 4
AE_HCxJonf-157 4
AE_HCXJonf-162 4
AE_HCXJonf-168 4 5
AE_HCxJonf-175 4
AE_HCxJonf-183 4
AE_HCxJonf-185 4
AE0118-237 4 5
AE0118-238 4 7
AE0118-239 4 5
AE0118-240 4 7
AE0118-243 4 5
AE0118-244 4 5
AE0118-245 4 5
AE0118-246 4 7
AE0118-249 4 5
AE0206-159 4
AE0206-160 4
AE0206-161 4 5
AE0206-162 4 5
AE0206-163 4
AE0206-164 4
AE0206-165 4 5
AE0206-167 4 5
AE0206-168 4 5
AE0206-169 4
AE0206-170 4
AE0210-146 31 7
AE0210-147 5 7
AE0210-149 5
AE0210-150 31 5
AE0210-151 5 7
AE0210-152 4 7
AE0210-153 5 7
AE0210-154 5 7
AE0210-157 31 7
AE0210-158 31 5
AE0210-159 31 7
AE0210-162 31 7
AE0210-163 5 7
AE0210-164 5 7
AE0210-165 5
AE0210-166 5 7
AE0210-168 31 7
AE0210-169 31 7
AE0210-170 31 5
AE0210-171 5
AE0210-172 31 5
AE0210-173 5
AE0210-174 31 7
AE0213-175 5 6
AE0213-176 5 6
AE0213-177 31 5
AE0213-178 31 5
AE0213-179 5 6
AE0213-180 5 6
AE0213-181 31 5
AE0213-182 31 5
AE0213-183 31 5
AE0213-186 5 6
AE0213-187 31 5
AE0213-190 5 6
AE0213-193 31 5
AE0213-194 31 5
AE0213-195 5 6
AE0213-196 31 5
AE0213-197 5 6
AE0213-198 5
AE0213-199 5 6
AE0213-200 5 6
AE0213-201 5 6
AE0213-202 5 6
AE0213-205 5 6
AE0213-206 31 5
AE0251-323 5
AE0251-325 4 5
AE0251-327 4
AE0251-329 5
AE0251-330 4 5
AE0251-331 4 5
AE0251-342 4 5
AE0251-343 4 5
AE0406-239 4
AE0406-254 4
AE0406-258 4 7
AE0406-259 4 7
AE0406-263 4 7
AE0406-264 4 7
AE0406-266 4 7
AE0406-271 4
AE0406-278 4 7
AE0406-281 4
AE0406-286 4 7
AE0406-288 4 7
AE0406-289 4 7
AE0406-294 4 7
AE0406-298 4 7
Minneiska 4
NJ 303955 4
PRI 612-1 4 5
Arlet 22 5
Co-op 39 51 52
Pinova 4
Scired 4 5
Scifresh 5
0409-0025 4 5
0409-0026 4 5
0409-0027 4 5
0409-0031 4 5
0409-0033 4 5
0409-0047 4 5
G-14-050 4
G-14-052 4 5
G-14-054 4 5
G-14-055 4 5
G-14-056 4
G-14-057 4 5
G-14-059 4 5
G-14-060 4
G-14-061 4 5
G-14-062 4 5
G-14-064 4
G-14-065 4 5
G-14-069 4 5
G-14-067 4 5
G-14-068 4 5
G-14-071 4 5
G-14-073 4 5
G-14-074 4
G-14-075 4 5
G-14-076 4 5
G-14-077 4 5
G-14-078 4 5
G-14-080 4 5
G-09-232 5
G-09-233 5
G-09-234 10 5
G-09-235 5
G-09-236 10 5
G-09-237 10 5
G-09-238 5
G-09-239 10 5
G-09-240 10 5
G-09-241 10 5
G-09-242 5
G-09-243 10 5
G-09-245 5
G-09-246 10 5
G-09-258 5
G-09-259 5
G-09-260 5
G-09-261 5
G-09-262 5
G-09-263 10 5
G-09-264 5
G-09-265 5
G-09-266 5
G-09-267 10 5
G-09-268 5
0408-0021 4 5
Wijcik McIntosh 57 58
Beauty of Bath 4 5
Priam 4
Northern Spy 4 5
Co-op 15 4 7
MN 1702 4 5
WA 2 4 5
WA 5 5 7
Pitmaston Pineapple 5 7
0411-0011 22 4
0411-0017 22 4
0411-0023 4 5
AE0250-086 4
AE0250-087 4
AE0250-089 4
AE0250-090 4 5
AE0250-092 5
AE0250-093 4 5
AE0250-094 4 5
AE0250-095 5
Sonya 4 5
Co-op 38 5
AE0250-096 4
AE0250-327 15 4
Co-op 30 15 4
Jonagrimes 3 6
AE0211-036 4 5
G-07-039 5 7
G-07-041 4 5
BC-8S-27-43 4 5
AE0250-091 4 5
AE0250-097 4 5
AE0250-325 4 5
AE0250-326 4 5
AE0250-329 31 4
AE0250-333 31 4
AE0250-334 4 5
AE0250-335 31 4
AE0250-336 31 4
AE0250-338 31 4
AE0250-341 31 4
AE0211-038 4 5
AE0211-043 4 5
AE0211-045 5 6
AE0211-051 4 5
G-07-010 4 6
G-07-014 4 6
G-07-015 5 6
G-07-019 5 6
G-07-020 4 6
G-07-024 5 6
G-07-032 4 5
G-07-033 5 6
G-07-034 5 6
G-07-035 5 6
G-07-044 5 6
AE0211-053 4 5
AE0211-054 4 5
AE0250-088 4
AE0250-324 4
AE0250-328 4
AE0250-331 4
AE0250-332 4
AE0250-337 4
AE0250-339 4
Minnewashta 4
Autumn Crisp 4 7
G-14-066 4
Lu1-11-010 4 5
Lu1-11-013 4 5
Lu1-11-016 4 5
Lu1-11-017 4 5
Lu1-11-018 4 5
NJ 90 7
Lord Lambourne 4
Antonovka GH 5
Grimes Golden 3 4
Kidds Orange Red 4 5
Malus baccata Hansen #2 4 5
Malus baccata Jackii 62 63
Summerred 4 5
William's Pride 5 7
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-13-21Apple-RosBREED-3.9K-20191325.628.17
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 2345678910111213141516171819202122232425262728293031323334353637383940414243444546474849505152535455565758596061626364656667
GDsnp02124AAABAAnullAnullAnullAAABAABBBnullnullA-AB---ABA-ABAABnull--BAAAA--AAA-BAABABnullnullnullA--BA
RosBREEDSNP_SNP_AC_7598269_Lg13_02124_MAF30_1659946_exon1ABAABBBBB----BAABA-AB-AAA---AAABBAAA--BBABA--AABABABBBAABBAB----BB
RosBREEDSNP_SNP_AG_7608807_Lg13_02124_MAF40_1660721_exon2ABAABBBBBBBB-BAABAAABBAAA-ABABABBAAA--BBAABABAABAABBBBABABABBB--BB
RosBREEDSNP_SNP_GA_7588047_Lg13_02124_MAF20_1670374_exon2--BBAAABBABB-BBBABBBBBBBA----B--BB--ABBABAB-----BBABAAABABB-BBBAAB
RosBREEDSNP_SNP_GA_8352416_Lg13_84982_MAF20_84982_exon1--BBBAABAAAB-B----BABB-BA---BBBBBA-B-----BA-----AABAABAABBB-BBBABA
RosBREEDSNP_SNP_GT_7603135_Lg13_02124_MAF30_1667671_exon1BABBAAABAAAA-A--ABBBAABBB-BABBBAABBB--AABBABA---ABAAABAABABABBBAAA
Alignments
Feature NameTypeLocationAnalysis
Chr13 chromosome Chr13:8003585..8835446. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation