Mdo-HB-13-20

Haplotype Block Overview
Name Mdo-HB-13-20
Species Malus x domestica
Stock Haplotype [view all 428]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 4
Rome Beauty Law 19 4
Jonafree 4
Redfree 4 5
Spartan 4 8
Wagener 15 5
Worcester Pearmain 4
Tsugaru 4
Golden Delicious 4 5
Fuji 4 5
Empire 4 5
Gala 4 5
Honeycrisp 4
Elstar 4 5
Marshall McIntosh 4 5
Cripps Pink 4
Granny Smith 4 5
Jonathan 4 6
Ralls Janet 4
Delicious 5 8
Discovery 4
Prima 4 6
821 8
Fiesta 15 4
Ingrid Marie 4
Idared 15 6
Esopus Spitzenburg 4 5
Braeburn 5 8
Sansa 4 5
Lodi 27 5
James Grieve 4 6
Cripps Red 4 5
Burgundy 19 4
Akane 4
Ambrosia 4 5
Aurora Golden Gala 5
Beacon 4 5
Ben Davis 4 5 6
Cameo 4 8
Chinook 4 5
Clivia 4 5
Co-op 17 5 8
Co-op 18 4
Dayton 27 4 5 8
Delblush 4 5
Delorgue 19 4
Dolgo 28 4
Geheimrat Dr. Oldenburg 4 5
Duchess of Oldenburg 4 6
Early Cortland 5 6
Empress 5 8
F2 26829-2-2 6 8
Fantazja 4
Fireside 4 5
Fortune 15 5
Frostbite 4
Ginger Gold 5
GMAL 4327 4
GMAL 4328 4 6
GMAL 4329 4 5
GMAL 4332 4 6
Goodland 4 5
Haralson 4 5
Honeygold 4 5
Hudson 5
Jersey Black 4
Jonamac 5 6
Keepsake 4 5
Kerr 4
Lady Williams 4 5
Liberty 4
Linda 4
Longfield 19 8
Macoun 4
Malinda 4 5
Mantet 4
Melrose 4 5
MN 1627 4 5
MN 1628 4 5
MN 1691 4
MN 1706 5
MN 1708 4 5
MN 1760 4
MN 1764 4 5
MN 1789 4
MN 1802 4 5
MN 1836 5
MN 1837 4 5
MN 1839 5
MN 1888 4 5
MN 1899 4 5
MN 1940 4 5
MN 2016 15 4
AA-44 5 6
Monroe 19 4
Montgomery 4 5
Nicola 5
NJ 31 4
NJ 53 4 6
Oriole 4 5
PRI 14-126 4 8
PRI 14-510 6
PRI 16-144 4
PRI 1661-2 4
PRI 54-12 4 6
PRI 855-102 4
Primula 4 5
Raritan 4
Regent 4 5
Russian Seedling 4 5
Sawa 4 5
Sciros 5
Sharon 5 6
Silken 4
Wildung 5 6
Splendour 5
State Fair 4 5
NJ 55 4 5
Co-op 29 15 4
Sunrise 4 5
Sweet Sixteen 4 5
Topaz 4
Vista Bella 4 8
Wealthy 4
Winesap 6 8
Winter Banana 15 5
Yellow Newtown 5
Yellow Transparent 27 4
0407-0001 15 5
0407-0005 5
0407-0006 5
0407-0007 5
0407-0008 5
0408-0003 4 5
0408-0004 5 8
0408-0005 4 5
0408-0007 5 8
0408-0008 4 5
0408-0010 4 5
0408-0011 4 5
0408-0014 5 8
0408-0015 4 5
0409-0022 4 5
0409-0024 4 5
0409-0028 4 5
0409-0030 4 5
0409-0032 4 5
0409-0035 4 5
0409-0036 4 5
0409-0038 4 5
0409-0039 4 5
0409-0040 4 5
0409-0043 4 5
0409-0045 4 5
0410-0002 5
0410-0003 4 5
0410-0005 4 5
0410-0006 4 5
0410-0010 5
0410-0011 4 5
0410-0012 4 5
0410-0013 4 5
0410-0015 4 5
0410-0017 5
0410-0018 5
0414-0010 4 5
0414-0015 4 5
0414-0017 4 5
0414-0018 4 8
0414-0019 4 5
0414-0020 4
0414-0021 15 4
0415-0001 4
0415-0004 4
0415-0005 4
0415-0011 4 8
0415-0012 4
0415-0013 4
0415-0014 4
0415-0016 4
0415-0017 4
0415-0019 4
0415-0020 4
0415-0025 4
AE_HCxJonf-145 4
AE_HCXJonf-148 4
AE_HCxJonf-157 4
AE_HCXJonf-162 4
AE_HCXJonf-168 4 5
AE_HCxJonf-175 4
AE_HCxJonf-183 4
AE_HCxJonf-185 4
AE0118-237 4
AE0118-238 4
AE0118-239 4 5
AE0118-240 4
AE0118-243 4 5
AE0118-244 4 5
AE0118-245 4 5
AE0118-246 4
AE0118-249 4 5
AE0206-159 4
AE0206-160 4
AE0206-161 4 5
AE0206-162 4 5
AE0206-163 4
AE0206-164 4
AE0206-165 4 5
AE0206-167 4 5
AE0206-168 4 5
AE0206-169 4
AE0206-170 4
AE0210-146 4 5
AE0210-147 4
AE0210-149 4 5
AE0210-150 5
AE0210-151 4
AE0210-152 4
AE0210-153 4
AE0210-154 4
AE0210-157 4 5
AE0210-158 5
AE0210-159 4 5
AE0210-162 4 5
AE0210-163 4
AE0210-164 4
AE0210-165 4 5
AE0210-166 4
AE0210-168 4 5
AE0210-169 4 5
AE0210-170 5
AE0210-171 4
AE0210-172 5
AE0210-173 4 5
AE0210-174 4 5
AE0213-175 5 6
AE0213-176 5 6
AE0213-177 4 5
AE0213-178 4 5
AE0213-179 5 6
AE0213-180 5 6
AE0213-181 4 5
AE0213-182 4 5
AE0213-183 4 5
AE0213-186 5 6
AE0213-187 4 5
AE0213-190 5 6
AE0213-193 4 5
AE0213-194 4 5
AE0213-195 5 6
AE0213-196 4 5
AE0213-197 5 6
AE0213-198 4 5
AE0213-199 5 6
AE0213-200 5 6
AE0213-201 5 6
AE0213-202 5 6
AE0213-205 5 6
AE0213-206 4 5
AE0251-323 5
AE0251-325 4 5
AE0251-327 4
AE0251-329 4 5
AE0251-330 4 5
AE0251-331 4 5
AE0251-342 4 5
AE0251-343 5
AE0406-239 4
AE0406-254 4
AE0406-258 4
AE0406-259 4
AE0406-263 4
AE0406-264 4
AE0406-266 4
AE0406-271 4
AE0406-274 4
AE0406-278 4
AE0406-281 4
AE0406-286 4
AE0406-288 4
AE0406-289 4
AE0406-294 4
AE0406-298 4
Minneiska 4
NJ 303955 4
PRI 612-1 4 5
Arlet 15 5
Co-op 39 19 4
Pinova 4
Scired 4 5
Scifresh 5
0409-0025 4 5
0409-0026 4 5
0409-0027 4 5
0409-0031 4 5
0409-0033 4 5
0409-0047 4 5
G-14-050 4
G-14-052 4 5
G-14-054 4 5
G-14-055 4 5
G-14-056 4
G-14-057 4 5
G-14-059 4 5
G-14-060 4
G-14-061 4 5
G-14-062 4 5
G-14-064 4
G-14-065 4 5
G-14-069 4 5
G-14-067 4 5
G-14-068 4 5
G-14-071 4 5
G-14-073 4 5
G-14-074 4
G-14-075 4 5
G-14-076 4 5
G-14-077 4 5
G-14-078 4 5
G-14-080 4 5
G-09-232 5
G-09-233 5
G-09-234 5 8
G-09-235 5
G-09-236 5 8
G-09-237 5 8
G-09-238 5
G-09-239 5 8
G-09-240 5 8
G-09-241 5 8
G-09-242 5
G-09-243 5 8
G-09-245 5
G-09-246 5 8
G-09-258 5
G-09-259 5
G-09-260 5
G-09-261 5
G-09-262 5
G-09-263 5 8
G-09-264 5
G-09-265 5
G-09-266 5
G-09-267 5 8
G-09-268 5
0408-0021 4 5
Wijcik McIntosh 4 5
Beauty of Bath 4
Priam 4
Northern Spy 4 5
Co-op 15 4 5
MN 1702 4 5
WA 2 4 5
WA 5 5
Pitmaston Pineapple 5 6
0411-0011 15 4
0411-0017 15 4
0411-0023 4 5
AE0250-086 4
AE0250-087 4
AE0250-089 4
AE0250-090 4 5
AE0250-092 5
AE0250-093 4 5
AE0250-094 4 5
AE0250-095 5
Sonya 4 5
Co-op 38 5
AE0250-096 4
AE0250-327 4 8
Co-op 30 4 8
AE0211-036 4 5
G-07-039 4 5
PRI 47-176 6
G-07-041 4 5
BC-8S-27-43 4 5
AE0250-091 4
AE0250-097 4
AE0250-325 4
AE0250-326 4
AE0250-329 4
AE0250-333 4
AE0250-334 4
AE0250-335 4
AE0250-336 4
AE0250-338 4
AE0250-341 4
AE0211-038 4 5
AE0211-043 4 5
AE0211-045 5 6
AE0211-051 4 5
G-07-010 4
G-07-014 4
G-07-015 4 5
G-07-019 4 5
G-07-020 4
G-07-024 4
G-07-032 4 5
G-07-033 4 5
G-07-034 4 5
G-07-035 4 5
G-07-044 4 5
AE0211-053 4 5
AE0211-054 4 5
AE0250-088 4
AE0250-324 4
AE0250-328 4
AE0250-331 4
AE0250-332 4
AE0250-337 4
AE0250-339 4
Minnewashta 4
Autumn Crisp 19 4
G-14-066 4
Lu1-11-010 4 5
Lu1-11-013 4 5
Lu1-11-016 4 5
Lu1-11-017 4 5
Lu1-11-018 4 5
NJ 90 4 6
Lord Lambourne 4
Antonovka GH 4
Grimes Golden 3 4
Kidds Orange Red 4 5
Malus baccata Hansen #2 4
Malus baccata Jackii 8
Summerred 14 4
William's Pride 5
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-13-20Apple-RosBREED-3.9K-2019132424.1
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 234567891011121314151617181920212223242526272829303132333435363738
GDsnp00128--ABA-A----ABAAABAAAB--AAA-----ABAA--
RosBREEDSNP_SNP_AG_7227021_Lg13_00128_MAF10_1629641_exon1AAAABBAAAAABAAAAAAB------BAABABB--B--
RosBREEDSNP_SNP_AG_7504565_Lg13_AT4_MAF10_870297_exon1ABAABBABA--BABBABBA----BABB--AB---ABA
RosBREEDSNP_SNP_TC_7180078_Lg13_00128_MAF40_475519_exon2--AAB-BAAAB--B--AAAAAABBAAB--BB---BBA
Alignments
Feature NameTypeLocationAnalysis
Chr13 chromosome Chr13:7603258..7918646. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation