Mdo-HB-13-2

Haplotype Block Overview
Name Mdo-HB-13-2
Species Malus x domestica
Stock Haplotype [view all 432]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 3 8
Rome Beauty Law 12 8
Jonafree 3 8
Redfree 11 3
Spartan 3 8
Wagener 3 8
Worcester Pearmain 19 3
Tsugaru 3
Golden Delicious 3 4
Fuji 8
Empire 3 8
Gala 4 8
Honeycrisp 3 5
Elstar 4 8
Marshall McIntosh 11 3
Cripps Pink 3 4
Granny Smith 3 4
Jonathan 19 3
Ralls Janet 10 8
Delicious 8
Discovery 19 34
Prima 3 8
821 16
Fiesta 8
Ingrid Marie 5 8
Idared 19 8
Esopus Spitzenburg 3
Braeburn 8
Sansa 3 4
Lodi 3 5
James Grieve 11 8
Cripps Red 3 4
Burgundy 3 8
Akane 3
Ambrosia 3 8
Aurora Golden Gala 4
Beacon 33 34
Ben Davis 4 8
Cameo 3 8
Chinook 4 8
Clivia 5 8
Co-op 17 8
Co-op 18 12 51
Dayton 3 31 8
Delblush 3 4
Delcorf 4
Delorgue 3 4
Dolgo 3 8
Geheimrat Dr. Oldenburg 3 5
Duchess of Oldenburg 3 5
Early Cortland 11 3 8
Empress 11 40
F2 26829-2-2 8
Fantazja 3
Fireside 3
Fortune 8
Frostbite 3 8
Ginger Gold 3 4
GMAL 4327 11 5
GMAL 4328 11 5
GMAL 4329 11 5
GMAL 4332 3 5
Goodland 11 8
Haralson 3 5
Honeygold 3 4
Hudson 3 8
Jersey Black 10 8
Jonamac 11 3
Keepsake 3 8
Kerr 5 8
Lady Williams 4
Liberty 3 5
Linda 3 5
Liveland Raspberry 3 31
Longfield 3 31
Macoun 3 8
Malinda 3
Mantet 28 8
Melba 11 31
Melrose 19 8
MN 1627 4 5
MN 1628 3
MN 1691 3 8
MN 1706 3 31
MN 1708 5 8
MN 1760 3
MN 1764 11 3
MN 1789 3 4
MN 1802 11 4
MN 1836 3 8
MN 1837 3 4
MN 1839 3 4
MN 1888 3 4
MN 1899 3 8
MN 1940 11 3
MN 2016 8
AA-44 3 8
Monroe 3 8
Montgomery 3
NJ 31 8
NJ 53 11 3
Oriole 3
PRI 14-126 3 8
PRI 14-510 4 8
PRI 16-144 8
PRI 1661-2 3
PRI 54-12 5 8
PRI 855-102 8
Primula 11 8
Raritan 53 54
Regent 3 5
Russian Seedling 3
Sawa 3 8
Sciros 4 8
Sharon 11 3
Silken 3
Wildung 3
Splendour 4 8
State Fair 3 8
NJ 55 4 8
Co-op 29 3 8
Sunrise 3 31
Sweet Sixteen 3 8
Topaz 11 3
Vista Bella 11 40
Wealthy 3 5
Winesap 3 8
Winter Banana 8
Yellow Newtown 53 55
Yellow Transparent 3 5
0407-0001 4 8
0407-0005 4 8
0407-0006 3 4
0407-0007 3 4
0407-0008 3 4
0408-0003 3 4
0408-0004 4 8
0408-0005 3 4
0408-0007 4 8
0408-0008 3 4
0408-0010 3 4
0408-0011 3 4
0408-0014 4 8
0408-0015 3 4
0409-0022 4 5
0409-0024 4 5
0409-0028 4 5
0409-0030 4 5
0409-0032 4 5
0409-0035 4 5
0409-0036 3 4
0409-0038 3 4
0409-0039 4 5
0409-0040 3 4
0409-0043 3 4
0409-0045 4 5
0410-0002 4
0410-0003 3 4
0410-0005 3 4
0410-0006 3 4
0410-0010 4
0410-0011 3 4
0410-0012 3 4
0410-0013 3 4
0410-0015 3 4
0410-0017 4
0410-0018 4
0414-0010 3 5
0414-0015 3
0414-0017 3 5
0414-0018 5 8
0414-0019 3 8
0414-0020 3 5
0414-0021 5 8
0415-0001 3 5
0415-0004 3 5
0415-0005 3 5
0415-0011 5 8
0415-0012 3
0415-0013 3 5
0415-0014 3 8
0415-0016 3 5
0415-0017 3 5
0415-0019 5 8
0415-0020 3
0415-0025 3 5
AE_HCxJonf-145 3
AE_HCXJonf-148 5 8
AE_HCxJonf-157 5 8
AE_HCXJonf-162 3
AE_HCXJonf-168 3 5
AE_HCxJonf-175 3 8
AE_HCxJonf-183 3
AE_HCxJonf-185 3
AE0118-237 3 5
AE0118-238 5
AE0118-239 3
AE0118-240 3 5
AE0118-243 5
AE0118-244 3 5
AE0118-245 3 5
AE0118-246 3
AE0118-249 3 5
AE0206-159 3 8
AE0206-160 3 8
AE0206-161 3 8
AE0206-162 4 8
AE0206-163 8
AE0206-164 3 8
AE0206-165 8
AE0206-167 3 4
AE0206-168 4 8
AE0206-169 3 4
AE0206-170 8
AE0210-146 11 3
AE0210-147 3 5
AE0210-149 11 3
AE0210-150 3 5
AE0210-151 3 5
AE0210-152 3 8
AE0210-153 3 5
AE0210-154 3 5
AE0210-157 31 5
AE0210-158 11 3
AE0210-159 3 5
AE0210-162 11 31
AE0210-163 11 3
AE0210-164 3 5
AE0210-165 31 5
AE0210-166 11 31
AE0210-168 11 31
AE0210-169 11 31
AE0210-170 11 31
AE0210-171 3 5
AE0210-172 11 3
AE0210-173 11 3
AE0210-174 11 3
AE0213-175 3 5
AE0213-176 3
AE0213-177 3 4
AE0213-178 3 4
AE0213-179 3 5
AE0213-180 3 5
AE0213-181 3 4
AE0213-182 3 4
AE0213-183 3
AE0213-186 4 5
AE0213-187 3 4
AE0213-190 4 5
AE0213-193 3
AE0213-194 3
AE0213-195 3 5
AE0213-196 3
AE0213-197 3 5
AE0213-198 3 4
AE0213-199 3 5
AE0213-200 4 5
AE0213-201 3 5
AE0213-202 3 4
AE0213-205 4 5
AE0213-206 3
AE0251-323 3 4
AE0251-325 4 8
AE0251-327 4 8
AE0251-329 3 8
AE0251-330 3 8
AE0251-331 3 4
AE0251-342 3 4
AE0251-343 3 4
AE0406-239 3 5
AE0406-254 3 5
AE0406-258 3
AE0406-259 3
AE0406-263 3
AE0406-264 3
AE0406-266 3 5
AE0406-271 3 5
AE0406-274 3 5
AE0406-278 3 5
AE0406-281 3
AE0406-286 3
AE0406-288 3
AE0406-289 3 5
AE0406-294 3 5
AE0406-298 3 5
Minneiska 3 8
NJ 303955 8
PRI 612-1 3 8
Arlet 3 8
Co-op 39 3 31
Pinova 3 5
Scired 4 8
Scifresh 4 8
0409-0025 4 5
0409-0026 4 5
0409-0027 3 4
0409-0031 4 5
0409-0033 4 5
0409-0047 4 5
G-14-050 5 8
G-14-052 3 8
G-14-054 5 8
G-14-055 5 8
G-14-056 5 8
G-14-057 3 4
G-14-059 5 8
G-14-060 4 5
G-14-061 3 4
G-14-062 5 8
G-14-064 5 8
G-14-065 4 5
G-14-069 3 8
G-14-067 5 8
G-14-068 3 8
G-14-071 5 8
G-14-073 5 8
G-14-074 3 4
G-14-075 5 8
G-14-076 4 5
G-14-077 3 8
G-14-078 3 8
G-14-080 3 8
G-09-232 3 8
G-09-233 4 8
G-09-234 3 8
G-09-235 4 8
G-09-236 3 8
G-09-237 4 8
G-09-238 4 8
G-09-239 3 8
G-09-240 3 8
G-09-241 3 8
G-09-242 3 8
G-09-243 3 8
G-09-245 3 8
G-09-246 4 8
G-09-258 3 8
G-09-259 4 8
G-09-260 4 8
G-09-261 3 8
G-09-262 4 8
G-09-263 3 8
G-09-264 3 8
G-09-265 4 8
G-09-266 4 8
G-09-267 3 8
G-09-268 3 8
0408-0021 3 4
Wijcik McIntosh 11 3
Beauty of Bath 34 50
Priam 3 8
Northern Spy 3
Co-op 15 3 8
MN 1702 3 8
WA 2 4
WA 5 3 8
Pitmaston Pineapple 4 8
0411-0011 3 8
0411-0017 8
0411-0023 3
AE0250-086 3 4
AE0250-087 8
AE0250-089 4 8
AE0250-090 8
AE0250-092 3 4
AE0250-093 3 8
AE0250-094 3 8
AE0250-095 3 4
Sonya 8
Co-op 38 3 8
AE0250-096 8
AE0250-327 8
Co-op 30 3 8
Jonagrimes 3
AE0211-036 3 4
G-07-039 3 4
PRI 14-152 3 8
PRI 47-176 19 8
G-07-041 4 8
BC-8S-27-43 4 8
AE0250-091 11 3
AE0250-097 5
AE0250-325 5
AE0250-326 11 3
AE0250-329 11 5
AE0250-333 3 5
AE0250-334 3 5
AE0250-335 11 3
AE0250-336 5
AE0250-338 11 5
AE0250-341 5
AE0211-038 11 4
AE0211-043 3 5
AE0211-045 3 5
AE0211-051 4 5
G-07-010 3 4
G-07-014 3
G-07-015 3 4
G-07-019 3 4
G-07-020 3 4
G-07-024 3
G-07-032 3 4
G-07-033 3
G-07-034 3
G-07-035 3 4
G-07-044 3 4
AE0211-053 3 4
AE0211-054 3 8
AE0250-088 3 8
AE0250-324 5 8
AE0250-328 3
AE0250-331 3
AE0250-332 3 8
AE0250-337 3 5
AE0250-339 5 8
Minnewashta 3 8
Autumn Crisp 4 8
G-14-066 4 5
Lu1-11-010 3 8
Lu1-11-013 4 8
Lu1-11-016 3 8
Lu1-11-017 4 8
Lu1-11-018 4 8
NJ 90 3
Lord Lambourne 11 19
Antonovka GH 5 8
Grimes Golden 3
Kidds Orange Red 8
Malus baccata Hansen #2 31 53
Malus baccata Jackii 56
Summerred 3 57
William's Pride 3 8
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-13-2Apple-RosBREED-3.9K-2019130.860.86
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 2345678910111213141516171819202122232425262728293031323334353637383940414243444546474849505152535455565758596061
RosBREEDSNP_SNP_AG_371869_Lg13_00368_MAF40_577826_exon3AAAAAABBBABAB----ABBA---BAABAAABABAAA-ABA--B-AA--A-ABB--BBAB
RosBREEDSNP_SNP_CT_256845_Lg13_MDP0000187560_MAF40_MDP0000187560_exon4BBAB--AAABA----A-BB-A---AB---BBBAABBB-BAB---AABABBBABBBAA--A
RosBREEDSNP_SNP_CT_357151_Lg13_00368_MAF20_243990_exon1BBABBABBBBBBBBBBBABB----BB---AABBBBBB-B--ABB---BBBBBBBBAB--B
RosBREEDSNP_SNP_GA_339509_Lg13_00368_MAF50_915344_exon3BBBBBBAABBBBBABA-BBABBA-----BBBBAABB-BBAB----BBABABBAABBAABA
RosBREEDSNP_SNP_TC_317637_Lg13_00368_MAF10_MDP0000561477_exon2AAABBAAAAAAAAAAAABAAAAA-AAAAAABBA--BB-B----AA----ABAAAA-B--A
RosBREEDSNP_SNP_TC_361008_Lg13_00368_MAF20_MDP0000153655_exon2-AAAAAA--BAAAAAAAAAAAAAAAAAA-A-AAAA-A-B----AAAA--AAABAA-A--B
Alignments
Feature NameTypeLocationAnalysis
Chr13 chromosome Chr13:373303..472343. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation