Mdo-HB-13-16

Haplotype Block Overview

Name	Mdo-HB-13-16
Species	Malus x domestica
Stock Haplotype	[view all 426]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Cox's Orange Pippin	14 4
Rome Beauty Law	11 14
Jonafree	38 4
Redfree	18 53
Spartan	14 18
Wagener	14 4
Worcester Pearmain	4 47
Tsugaru	18 4
Golden Delicious	4
Fuji	18 4
Empire	14 18
Gala	4
Honeycrisp	6 9
Elstar	4
Marshall McIntosh	18
Cripps Pink	18 4
Granny Smith	18 4
Jonathan	18 5
Ralls Janet	18
Delicious	14 4
Discovery	47 66
Prima	27 5
821	29 6
Fiesta	4
Ingrid Marie	4 54
Idared	4 5
Esopus Spitzenburg	18
Braeburn	14 4
Sansa	18 4
Lodi	11 18
James Grieve	4 5
Cripps Red	4
Burgundy	11 18
Akane	18 4
Ambrosia	4
Aurora Golden Gala	4
Beacon	18 4
Ben Davis	28 4 5 6
Cameo	14 4
Chinook	4
Clivia	4
Co-op 17	29 4
Co-op 18	12 9
Dayton	18 29 5
Delblush	4
Delcorf	11
Delorgue	11 4
Dolgo	18 52
Geheimrat Dr. Oldenburg	11 4
Duchess of Oldenburg	5 6
Early Cortland	18 5
Empress	14 18
F2 26829-2-2	29 5
Fantazja	14 18
Fireside	18 4
Fortune	10 5
Frostbite	10 9
Ginger Gold	18 4
GMAL 4327	18
GMAL 4328	18 5
GMAL 4329	18
GMAL 4332	18 5
Goodland	18 4
Haralson	4 6
Honeygold	4 6
Jersey Black	14 17
Jonamac	18 5
Kerr	18 6
Lady Williams	18 4
Liberty	18 6
Linda	14 18
Longfield	84 85
Macoun	14 18
Malinda	14 4
Mantet	18
Melba	18
Melrose	18 4
MN 1627	4 6
MN 1691	18 4
MN 1706	18
MN 1760	18
MN 1764	18
MN 1789	4
MN 1802	18 4
MN 1837	4
MN 1839	4
MN 1888	18 4
MN 1899	4 9
MN 1940	18
MN 2016	18 4
AA-44	4 5
Monroe	11 18
Montgomery	18
Nicola	4
NJ 31	38
NJ 53	18 5
Oriole	18
PCF-3-120	18 4
PRI 14-126	29 4
PRI 14-510	4 5
PRI 16-144	4
PRI 1661-2	18 4
PRI 54-12	5 6
PRI 855-102	4
Primula	18 4
Raritan	74 75
Regent	18 4
Russian Seedling	18
Sawa	14 18
Sciros	4
Sharon	18 5
Silken	18 6
Wildung	4 5
Splendour	4
State Fair	18 4
NJ 55	4
Co-op 29	10 4
Sunrise	18
Sweet Sixteen	18 9
Topaz	4 5
Vista Bella	14 18
Wealthy	18 6
Winesap	14 6
Winter Banana	10 4
Yellow Newtown	18 4
Yellow Transparent	11 91
0407-0001	4
0407-0005	4
0407-0006	4
0407-0007	4
0407-0008	4
0408-0003	4
0408-0004	29 4
0408-0005	4
0408-0007	29 4
0408-0008	4
0408-0010	4
0408-0011	4
0408-0014	29 4
0408-0015	4
0409-0022	4 6
0409-0024	4 6
0409-0028	4 9
0409-0030	4 6
0409-0032	4 9
0409-0035	4 6
0409-0036	4 9
0409-0038	4 6
0409-0039	4 9
0409-0040	4 9
0409-0043	4 9
0409-0045	4 6
0410-0002	4
0410-0003	18 4
0410-0005	18 4
0410-0006	18 4
0410-0010	4
0410-0011	18 4
0410-0012	18 4
0410-0013	18 4
0410-0015	18 4
0410-0017	4
0410-0018	4
0414-0010	4 6
0414-0015	4 6
0414-0017	4 6
0414-0018	29 6
0414-0019	4 9
0414-0020	4 6
0414-0021	4 6
0415-0001	4 6
0415-0004	4 6
0415-0005	4 9
0415-0011	29 6
0415-0012	4 9
0415-0013	4 6
0415-0014	4 6
0415-0016	4 6
0415-0017	4 9
0415-0019	4 6
0415-0020	4 9
0415-0025	4 9
AE_HCxJonf-145	4 9
AE_HCXJonf-148	4 6
AE_HCxJonf-157	4 6
AE_HCXJonf-162	38 9
AE_HCXJonf-168	4 6
AE_HCxJonf-175	4 9
AE_HCxJonf-183	38 6
AE_HCxJonf-185	38 9
AE0118-237	18 9
AE0118-238	18 6
AE0118-239	4 9
AE0118-240	18 6
AE0118-243	4 9
AE0118-244	18 6
AE0118-245	4 9
AE0118-246	18 9
AE0118-249	4 9
AE0206-159	18 4
AE0206-160	18 4
AE0206-161	18 4
AE0206-162	18 4
AE0206-163	18 4
AE0206-164	18 4
AE0206-165	18 4
AE0206-167	18 4
AE0206-168	18 4
AE0206-169	18 4
AE0206-170	18 4
AE0210-146	18
AE0210-147	18
AE0210-149	18
AE0210-150	18
AE0210-151	18
AE0210-152	18
AE0210-153	18
AE0210-154	18
AE0210-157	18
AE0210-158	18
AE0210-159	18
AE0210-162	18
AE0210-163	18
AE0210-164	18
AE0210-165	18
AE0210-166	18
AE0210-168	18
AE0210-169	18
AE0210-170	18
AE0210-171	18
AE0210-172	18
AE0210-173	18
AE0210-174	18
AE0213-175	18 5
AE0213-177	18 4
AE0213-178	18 4
AE0213-179	18 5
AE0213-180	18 5
AE0213-181	18 4
AE0213-182	18 4
AE0213-183	18 4
AE0213-186	18 5
AE0213-187	18 4
AE0213-190	4 5
AE0213-193	18
AE0213-194	18
AE0213-195	18 5
AE0213-196	18 4
AE0213-197	18 5
AE0213-198	18 4
AE0213-199	18 5
AE0213-200	4 5
AE0213-201	18 5
AE0213-202	4 5
AE0213-205	18 5
AE0213-206	18
AE0251-323	18 4
AE0251-325	4 9
AE0251-327	4 9
AE0251-329	18 4
AE0251-330	18 4
AE0251-331	4 9
AE0251-342	4 9
AE0251-343	18 4
AE0406-239	6 9
AE0406-254	6
AE0406-258	18 9
AE0406-259	18 9
AE0406-263	18 9
AE0406-264	18 6
AE0406-266	18 9
AE0406-271	6
AE0406-274	6
AE0406-278	18 6
AE0406-281	6 9
AE0406-286	18 9
AE0406-288	18 6
AE0406-289	18 9
AE0406-294	18 6
AE0406-298	18 9
Minneiska	18 9
NJ 303955	4
PRI 612-1	14 4
Arlet	4
Co-op 39	63 64
Pinova	4
Scired	4
Scifresh	4
0409-0025	4 6
0409-0026	4 6
0409-0027	4 9
0409-0031	4 6
0409-0033	4 6
0409-0047	4 6
G-14-050	4
G-14-052	4
G-14-054	4
G-14-055	4
G-14-056	4
G-14-057	4
G-14-059	4
G-14-060	4
G-14-061	4
G-14-062	4
G-14-064	4
G-14-065	4
G-14-069	4
G-14-067	4
G-14-068	4
G-14-071	4
G-14-073	4
G-14-074	4
G-14-075	4
G-14-076	4
G-14-077	4
G-14-078	4
G-14-080	4
G-09-232	18 4
G-09-233	4
G-09-234	14 18
G-09-235	4
G-09-236	14 18
G-09-237	14 18
G-09-238	4
G-09-239	14 18
G-09-240	14 18
G-09-241	14 18
G-09-242	18 4
G-09-243	14 18
G-09-245	18 4
G-09-246	14 18
G-09-258	4
G-09-259	4
G-09-260	4
G-09-261	4
G-09-262	4
G-09-263	14 18
G-09-264	18 4
G-09-265	4
G-09-266	4
G-09-267	14 18
G-09-268	4
0408-0021	4
Wijcik McIntosh	18
Beauty of Bath	66
Priam	18 4
Northern Spy	18 38
Co-op 15	18 4
MN 1702	4 9
WA 2	4
WA 5	18 4
Pitmaston Pineapple	4 5
0411-0011	4
0411-0017	4
0411-0023	4
AE0250-086	4 9
AE0250-087	4 9
AE0250-089	4 9
AE0250-090	4 9
AE0250-092	18 4
AE0250-093	4 9
AE0250-094	18 4
AE0250-095	18 4
Sonya	4
Co-op 38	4
AE0250-096	18 4
AE0250-327	18 29
Co-op 30	29 4
Jonagrimes	3 5
AE0211-036	4 44
G-07-039	18 4
PRI 14-152	29 4
PRI 47-176	5
G-07-041	18 4
BC-8S-27-43	4
AE0250-091	18 9
AE0250-097	18 6
AE0250-325	18 9
AE0250-326	18 6
AE0250-329	18 9
AE0250-333	18 6
AE0250-334	18 9
AE0250-335	18 9
AE0250-336	18 6
AE0250-338	18 6
AE0250-341	18 6
AE0211-038	18
AE0211-043	4
AE0211-045	4 5
G-07-010	18
G-07-014	18
G-07-015	18 4
G-07-019	18 4
G-07-020	18
G-07-024	18
G-07-032	18 4
G-07-033	18 4
G-07-034	18 4
G-07-035	18 4
G-07-044	18 4
AE0211-053	18 4
AE0211-054	18
AE0250-088	18 9
AE0250-324	18 6
AE0250-328	18 9
AE0250-331	18 6
AE0250-332	18 9
AE0250-337	18 9
AE0250-339	18 6
Minnewashta	18
Autumn Crisp	11 4
G-14-066	4
Lu1-11-010	18 4
Lu1-11-013	18 4
Lu1-11-016	18
Lu1-11-017	18 4
Lu1-11-018	18 4
NJ 90	18
Lord Lambourne	47 5
Antonovka GH	11 18
Grimes Golden	3 4
Kidds Orange Red	4
Malus baccata Hansen #2	86 87
Malus baccata Jackii	88
Summerred	11 89
William's Pride	18 4

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Mdo-HB-13-16	Apple-RosBREED-3.9K-2019	13	20.49	21.78

Projects


Project Name
RosBREED_Apple_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94
RosBREEDSNP_SNP_AC_6306433_Lg13_226059_MAF30_226059_exon2	A	B	A	B	A	-	-	B	A	B	A	-	B	B	A	A	A	A	A	A	A	A	A	B	A	-	-	A	B	A	A	-	-	-	-	-	B	B	B	B	-	-	B	A	B	B	B	B	-	-	A	A	B	-	B	B	-	-	A	B	B	A	B	-	-	A	A	B	-	A	A	B	B	A	B	A	A	A	-	-	A	A	-	-	A	B	A	A	B	-	A	B	B
RosBREEDSNP_SNP_AC_6451261_Lg13_65890_MAF20_65890_exon1	A	A	A	B	A	A	A	A	B	A	A	A	B	A	A	A	A	A	A	A	A	B	A	-	-	B	B	B	B	B	A	A	B	-	A	B	A	A	B	A	A	B	B	A	B	A	B	A	-	-	B	A	A	-	B	B	-	-	B	B	B	A	B	A	B	A	A	B	A	A	A	B	A	B	A	B	A	B	B	A	A	B	A	A	B	A	B	A	A	B	A	B	A
RosBREEDSNP_SNP_AG_6005626_Lg13_RosCOS2511_MAF40_MDP0000859856_exon1	A	B	A	A	A	A	A	A	A	B	B	B	A	A	A	B	B	A	B	B	A	A	A	-	-	A	B	A	A	A	-	B	A	-	A	A	B	B	A	A	A	A	A	A	A	A	B	A	-	-	A	B	A	-	A	A	B	A	A	A	A	A	B	A	A	A	A	A	B	A	A	B	A	A	A	A	A	A	-	-	B	A	A	B	B	B	A	A	B	A	-	-	A
RosBREEDSNP_SNP_AG_6451182_Lg13_65890_MAF30_65890_exon1	A	A	A	B	A	A	A	A	B	A	A	A	B	A	A	A	A	A	A	A	A	A	A	-	-	B	B	A	B	A	A	B	A	-	-	-	A	A	B	A	A	B	B	A	B	A	B	A	A	-	B	A	A	-	B	B	-	-	B	B	B	A	B	A	B	A	-	B	A	A	B	A	B	A	B	A	B	A	B	A	A	B	A	A	B	A	-	A	A	B	A	B	A
RosBREEDSNP_SNP_GA_6003341_Lg13_RosCOS2511_MAF20_1660907_exon3	-	-	B	B	B	B	B	B	B	B	B	B	A	B	B	-	B	B	B	B	B	B	B	-	-	B	B	B	-	-	B	B	A	B	B	B	B	B	B	B	B	B	A	B	B	B	B	-	B	-	B	B	A	A	A	-	B	B	B	B	-	A	B	B	A	A	B	A	B	B	B	B	-	-	B	B	B	B	A	B	B	B	B	A	B	B	B	-	-	A	B	A	B
RosBREEDSNP_SNP_GA_6014979_Lg13_RosCOS2511_MAF30_246417_exon1	B	B	B	B	B	B	B	B	B	B	B	B	A	B	B	B	B	B	B	B	B	B	B	-	-	B	B	B	A	B	B	B	A	B	B	B	B	B	B	B	B	B	A	B	B	B	B	B	B	-	B	B	A	A	A	B	B	B	B	B	-	A	B	B	A	A	B	A	B	B	B	B	A	B	B	B	B	B	A	B	B	B	A	B	B	B	-	-	-	A	B	A	B
RosBREEDSNP_SNP_GA_6451264_Lg13_65890_MAF20_65890_exon1	B	B	B	null	A	A	B	B	null	B	B	B	null	B	B	B	B	-	-	B	A	A	null	-	-	null	null	null	null	null	B	null	B	-	B	null	B	B	null	-	A	null	B	-	-	A	null	A	-	B	A	null	A	-	null	null	-	-	null	-	null	null	B	-	-	B	B	-	B	-	null	B	null	B	null	B	B	null	-	-	null	B	A	B	B	null	null	B	B	null	-	-	B
RosBREEDSNP_SNP_TC_6361679_Lg13_155673_MAF30_155673_exon2	A	A	A	B	B	B	A	A	B	A	B	A	B	-	-	A	A	A	A	-	-	B	B	-	-	B	B	B	B	B	A	A	B	-	A	B	B	-	-	A	-	-	B	-	-	B	B	B	A	-	B	A	B	-	-	B	-	-	-	B	B	A	B	-	-	A	A	B	B	B	A	B	B	A	A	B	B	A	B	A	B	A	B	A	B	A	B	A	A	B	B	B	B

Alignments

Feature Name	Type	Location	Analysis
Chr13	chromosome	Chr13:6433060..6842717.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation