Mdo-HB-13-15

Haplotype Block Overview
Name Mdo-HB-13-15
Species Malus x domestica
Stock Haplotype [view all 431]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 4 5
Rome Beauty Law 6 9
Jonafree 4 6
Redfree 6
Spartan 11 9
Wagener 4 9
Worcester Pearmain 4 5
Tsugaru 4 6
Golden Delicious 4
Fuji 4 6
Empire 11 9
Gala 4
Honeycrisp 4 5
Elstar 4
Marshall McIntosh 11 6
Cripps Pink 11 4
Granny Smith 11 4
Jonathan 6 9
Ralls Janet 10 6
Delicious 4 9
Discovery 5 9
Prima 4
Fiesta 4
Ingrid Marie 4 9
Idared 4 9
Esopus Spitzenburg 6
Braeburn 4 9
Sansa 4 6
Lodi 6 9
James Grieve 4
Cripps Red 4
Burgundy 11 6
Akane 4 6
Ambrosia 4
Aurora Golden Gala 4
Beacon 41 42
Ben Davis 4 6
Cameo 4 9
Chinook 4
Clivia 4
Co-op 17 4 6
Co-op 18 4 6
Dayton 4 6
Delblush 4
Delcorf 6
Delorgue 4 6
Dolgo 11 39
Geheimrat Dr. Oldenburg 4 6
Duchess of Oldenburg 5
Early Cortland 4 6
Empress 6 9
F2 26829-2-2 4 6
Fantazja 11 9
Fireside 4 6
Fortune 4 50
Frostbite 4
Ginger Gold 4 6
GMAL 4327 11 24
GMAL 4328 24 5
GMAL 4329 11 24
GMAL 4332 24 5
Goodland 6 9
Haralson 4 5
Honeygold 4 5
Hudson 6 9
Jersey Black 3 9
Jonamac 6
Keepsake 4 6
Kerr 11 5
Lady Williams 11 4
Liberty 11 5
Linda 6 9
Liveland Raspberry 52 6
Longfield 70 71
Macoun 11 9
Malinda 4 9
Mantet 36 6
Melba 52 6
Melrose 4 6
MN 1627 4 5
MN 1628 4 6
MN 1691 6 9
MN 1706 6
MN 1708 4 5
MN 1760 6
MN 1764 6
MN 1789 4 9
MN 1802 11 4
MN 1836 4
MN 1837 4 9
MN 1839 4
MN 1888 4 6
MN 1899 4 5
MN 1940 6
MN 2016 4 6
AA-44 4 9
Monroe 6
Montgomery 24 6
Nicola 4
NJ 31 6
NJ 53 6 9
Oriole 6
PRI 14-126 4 6
PRI 14-510 4
PRI 16-144 4
PRI 1661-2 11 4
PRI 54-12 4 5
PRI 855-102 4
Primula 4 6
Raritan 27 28
Regent 11 5
Russian Seedling 6
Sawa 6 9
Sciros 4
Sharon 5 6
Silken 11 5
Wildung 4 5
Splendour 4
State Fair 4 6
NJ 55 4
Co-op 29 4 50
Sunrise 11 6
Sweet Sixteen 4 6
Topaz 4
Vista Bella 47 9
Wealthy 5 6
Winesap 4 9
Winter Banana 4 50
Yellow Newtown 42 66
Yellow Transparent 28 9
0407-0001 4
0407-0005 4
0407-0006 4
0407-0007 4
0407-0008 4
0408-0003 4
0408-0004 4 6
0408-0005 4
0408-0007 4 6
0408-0008 4
0408-0010 4
0408-0011 4
0408-0014 4 6
0408-0015 4
0409-0022 4 5
0409-0024 4 5
0409-0028 4
0409-0030 4 5
0409-0032 4
0409-0035 4 5
0409-0036 4
0409-0038 4 5
0409-0039 4
0409-0040 4
0409-0043 4
0409-0045 4 5
0410-0002 4
0410-0003 11 4
0410-0005 11 4
0410-0006 11 4
0410-0010 4
0410-0011 11 4
0410-0012 11 4
0410-0013 11 4
0410-0015 11 4
0410-0017 4
0410-0018 4
0414-0010 4 5
0414-0015 4 5
0414-0017 4 5
0414-0018 5 6
0414-0019 4
0414-0020 4 5
0414-0021 4 5
0415-0001 4 5
0415-0004 4 5
0415-0005 4 5
0415-0011 5 6
0415-0012 4
0415-0013 4 5
0415-0014 4 5
0415-0016 4 5
0415-0017 4
0415-0019 4 5
0415-0020 4
0415-0025 4
AE_HCxJonf-145 4
AE_HCXJonf-148 4 5
AE_HCxJonf-157 4 5
AE_HCXJonf-162 4 6
AE_HCXJonf-168 11 5
AE_HCxJonf-175 4
AE_HCxJonf-183 5 6
AE_HCxJonf-185 4 6
AE0118-237 11 4
AE0118-238 11 5
AE0118-239 4
AE0118-240 11 5
AE0118-243 4 5
AE0118-244 11 5
AE0118-245 4 5
AE0118-246 11 4
AE0118-249 4 5
AE0206-159 4 6
AE0206-160 4 6
AE0206-161 4 6
AE0206-162 4 6
AE0206-163 4 6
AE0206-164 4 6
AE0206-165 4 6
AE0206-167 4 6
AE0206-168 4 6
AE0206-169 4 6
AE0206-170 4 6
AE0210-146 11 24
AE0210-147 11
AE0210-149 11
AE0210-150 24 6
AE0210-151 11
AE0210-152 11 6
AE0210-153 11
AE0210-154 11
AE0210-157 11
AE0210-158 24 6
AE0210-159 11
AE0210-162 11 24
AE0210-163 11
AE0210-164 11
AE0210-165 11 6
AE0210-166 11 24
AE0210-168 24 6
AE0210-169 24 6
AE0210-170 24 6
AE0210-171 11
AE0210-172 24 6
AE0210-173 11 6
AE0210-174 11 24
AE0213-175 5 6
AE0213-176 24 6
AE0213-177 24 4
AE0213-178 24 4
AE0213-179 5 6
AE0213-180 5 6
AE0213-181 24 4
AE0213-182 24 4
AE0213-183 24 4
AE0213-186 5 6
AE0213-187 24 4
AE0213-190 4 5
AE0213-193 24 6
AE0213-194 24 6
AE0213-195 5 6
AE0213-196 24 4
AE0213-197 5 6
AE0213-198 11 4
AE0213-199 5 6
AE0213-200 4 5
AE0213-201 5 6
AE0213-202 4 5
AE0213-205 5 6
AE0213-206 24 6
AE0251-323 4 6
AE0251-325 4
AE0251-327 4
AE0251-329 4 6
AE0251-330 4 6
AE0251-331 4
AE0251-342 4
AE0251-343 4 6
AE0406-239 4 5
AE0406-254 5
AE0406-258 11 4
AE0406-259 11 4
AE0406-263 11 4
AE0406-264 11 5
AE0406-266 11 4
AE0406-271 5
AE0406-278 11 5
AE0406-281 4 5
AE0406-286 11 4
AE0406-288 11 5
AE0406-289 11 4
AE0406-294 11 5
AE0406-298 11 4
Minneiska 4 6
NJ 303955 4
PRI 612-1 4 9
Arlet 4
Co-op 39 57 58
Pinova 4
Scired 4
Scifresh 4
0409-0025 4 5
0409-0026 4 5
0409-0027 4
0409-0031 4 5
0409-0033 4 5
0409-0047 4 5
G-14-050 4
G-14-052 4
G-14-054 4
G-14-055 4
G-14-056 4
G-14-057 4
G-14-059 4
G-14-060 4
G-14-061 4
G-14-062 4
G-14-064 4
G-14-065 4
G-14-069 4
G-14-067 4
G-14-068 4
G-14-071 4
G-14-073 4
G-14-074 4
G-14-075 4
G-14-076 4
G-14-077 4
G-14-078 4
G-14-080 4
G-09-232 4 6
G-09-233 4
G-09-234 6 9
G-09-235 4
G-09-236 6 9
G-09-237 6 9
G-09-238 4
G-09-239 6 9
G-09-240 6 9
G-09-241 6 9
G-09-242 4 6
G-09-243 6 9
G-09-245 4 6
G-09-246 6 9
G-09-258 4
G-09-259 4
G-09-260 4
G-09-261 4
G-09-262 4
G-09-263 6 9
G-09-264 4 6
G-09-265 4
G-09-266 4
G-09-267 6 9
G-09-268 4
0408-0021 4
Wijcik McIntosh 64 65
Beauty of Bath 9
Priam 4 6
Northern Spy 6
Co-op 15 4 6
MN 1702 4
WA 2 4
WA 5 4 6
Pitmaston Pineapple 4
0411-0011 4
0411-0017 4
0411-0023 4
AE0250-086 4
AE0250-087 4
AE0250-089 4
AE0250-090 4
AE0250-092 4 6
AE0250-093 4 6
AE0250-094 4 6
AE0250-095 4 6
Sonya 4
Co-op 38 4
AE0250-096 6 9
AE0250-327 6
Co-op 30 4 6
Jonagrimes 3 5
AE0211-036 4 9
G-07-039 11 4
PRI 14-152 4 6
PRI 47-176 4 9
G-07-041 4 6
BC-8S-27-43 4
AE0250-091 24 4
AE0250-097 11 5
AE0250-325 11 4
AE0250-326 11 5
AE0250-329 24 4
AE0250-333 24 5
AE0250-334 11 4
AE0250-335 24 4
AE0250-336 24 5
AE0250-338 24 5
AE0250-341 11 5
AE0211-038 24 6
AE0211-043 4 5
AE0211-045 4 5
AE0211-051 5 6
G-07-010 11 6
G-07-014 11 6
G-07-015 11 4
G-07-019 11 4
G-07-020 11 6
G-07-024 11 6
G-07-032 4 6
G-07-033 11 4
G-07-034 11 4
G-07-035 11 4
G-07-044 11 4
AE0211-053 4 6
AE0211-054 6
AE0250-088 4 6
AE0250-324 5 6
AE0250-328 4 6
AE0250-331 5 6
AE0250-332 4 6
AE0250-337 4 6
AE0250-339 5 6
Minnewashta 6
Autumn Crisp 4 6
G-14-066 4
Lu1-11-010 4 6
Lu1-11-013 4 6
Lu1-11-016 6
Lu1-11-017 4 6
Lu1-11-018 4 6
NJ 90 11
Lord Lambourne 4 5
Antonovka GH 64 65
Grimes Golden 3 4
Kidds Orange Red 4
Malus baccata Hansen #2 6
Malus baccata Jackii 17
Summerred 37 6
William's Pride 4 6
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-13-15Apple-RosBREED-3.9K-20191318.0218.02
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 2345678910111213141516171819202122232425262728293031323334353637383940414243444546474849505152535455565758596061626364656667686970717273747576
RosBREEDSNP_SNP_AG_5611802_Lg13_RosCOS1918_MAF40_668899_exon1ABAABAAABBBAABA--ABBBAABBAAAB---AA-ABAAABBA--B--ABBBABAAB--AABBBA--BBA-B-BB
RosBREEDSNP_SNP_CA_5665285_Lg13_RosCOS1918_MAF10_1684996_exon1--BBBBAA-BBBB--B--BBBBBBBAB--BBBBB-BB--BB--B-BABA----A-BABAAABBBBABBABBBABB
RosBREEDSNP_SNP_CT_5659750_Lg13_RosCOS1918_MAF10_1658996_exon2BBBBBBAABBBBBBAB-ABBBBBBB----BBBB--BBBBBBBBB-BABBBB--AABABAABABBBABBBABBABB
RosBREEDSNP_SNP_GA_5627655_Lg13_RosCOS1918_MAF20_910039_exon1BBBBBBBBAAABBABBBBBABBBAABBBBBBBBBA--BBABBBB-B--BBABBB-BBBBBBBABB--ABB-BBAB
RosBREEDSNP_SNP_GT_5621134_Lg13_RosCOS1918_MAF30_503424_exon2BABBABBBAA---ABA-B-AABAB-BBBA-BBBB-BABBABBAB-A--BAAABABABBA-ABAAABABBA-ABAB
RosBREEDSNP_SNP_GT_5624353_Lg13_RosCOS1918_MAF40_478996_exon3BABBABBBAAABBABB-BA---AB-BBBA-BB-B-BABBBABA--A--BAAABABBA--BBAAABBAABA-ABAB
RosBREEDSNP_SNP_TC_5637395_Lg13_RosCOS1918_MAF20_276613_exon1AAAAAAAABBBAABAAAAABAAAB-AAAAAAAAAB--AABAAAA-A--AAAAAA-AAAAAAAABA--BAA-AABA
RosBREEDSNP_SNP_TG_5654946_Lg13_RosCOS1918_MAF30_MDP0000190335_exon1--ABA--B-AAABABA--AAAAAAABBBAAABBA-AABAAA---AB--BAA--ABBAAABABAAA--BABA-BB-
Alignments
Feature NameTypeLocationAnalysis
Chr13 chromosome Chr13:6124257..6178379. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation