Mdo-HB-13-10

Haplotype Block Overview

Name	Mdo-HB-13-10
Species	Malus x domestica
Stock Haplotype	[view all 386]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Cox's Orange Pippin	4 5
Rome Beauty Law	4 7
Jonafree	6 7
Redfree	12
Spartan	5 6
Wagener	4 6
Worcester Pearmain	40 7
Tsugaru	10 4
Golden Delicious	4 5
Fuji	10 12
Empire	5 6
Gala	4 5
Honeycrisp	6
Elstar	4 5
Marshall McIntosh	12 5
Cripps Pink	4 5
Granny Smith	4 5
Jonathan	10 6
Ralls Janet	12 2
Delicious	10 6
Discovery	40 6
Prima	4 7
821	15
Fiesta	4
Ingrid Marie	4 6
Idared	4 6
Esopus Spitzenburg	10 7
Braeburn	4 6
Sansa	10 5
Lodi	7
James Grieve	10 4
Burgundy	5 7
Akane	10 7
Ambrosia	10 4
Aurora Golden Gala	5
Beacon	4 5
Ben Davis	5 6 7
Cameo	4 6
Chinook	4 5
Clivia	3 4
Co-op 17	4 7
Co-op 18	41 5
Dayton	12 4 7
Delblush	4 5
Delcorf	10 34
Delorgue	10 7
Dolgo	36 5
Geheimrat Dr. Oldenburg	3 32
Duchess of Oldenburg	6
Early Cortland	12 7
Empress	12
F2 26829-2-2	7
Fantazja	5 6
Fireside	10 4
Fortune	24 4
Frostbite	4
Ginger Gold	5 7
GMAL 4327	5
GMAL 4328	5 6
GMAL 4329	5 6
GMAL 4332	5 6
Goodland	10 12
Haralson	4 6
Honeygold	5 6
Hudson	6 7
Jersey Black	6
Jonamac	10 12
Keepsake	4 6
Kerr	5 6
Lady Williams	5
Liberty	5 6
Linda	6
Longfield	24 4
Macoun	5 6
Malinda	4 6
Mantet	12 22
Melba	12 6
MN 1627	5 6
MN 1628	4 7
MN 1691	10
MN 1706	39 5
MN 1708	4 6
MN 1760	10 7
MN 1764	10 7
MN 1789	10 5
MN 1802	5
MN 1836	4
MN 1837	10 5
MN 1839	4 5
MN 1888	10 5
MN 1899	4 5
MN 1940	10 12
MN 2016	12 4
AA-44	5 6
Monroe	10 7
Montgomery	6 7
Nicola	5
NJ 31	6
NJ 53	12 6
Oriole	10 6
PRI 14-126	4 7
PRI 14-510	4 7
PRI 1661-2	4 5
PRI 54-12	6 7
Primula	12 4
Raritan	5
Regent	5 6
Russian Seedling	24 5
Sawa	12 6
Sciros	10 5
Sharon	12 6
Silken	5 6
Wildung	4 6
Splendour	10 5
State Fair	12 4
NJ 55	4 5
Co-op 29	24 4
Sunrise	5 6
Sweet Sixteen	4 6
Topaz	10 4
Vista Bella	12 5
Wealthy	10 6
Winesap	5 6
Winter Banana	5 6
Yellow Newtown	5 50
Yellow Transparent	7
0407-0001	4 5
0409-0045	5 6
0410-0006	4 5
0410-0017	5
0414-0010	5 6
0414-0015	5 6
0414-0017	5 6
0414-0018	6 7
0414-0019	5 6
0415-0001	4 6
0415-0004	4 6
0415-0005	4 6
0415-0011	6 7
0415-0012	4 6
0415-0013	4 6
0415-0014	4 6
0415-0016	4 6
0415-0017	4 6
0415-0019	6 7
0415-0020	4 6
0415-0025	4 6
AE_HCxJonf-145	6
AE_HCXJonf-148	6 7
AE_HCxJonf-157	6 7
AE_HCXJonf-162	6
AE_HCXJonf-168	5 6
AE_HCxJonf-175	6 7
AE_HCxJonf-183	6
AE_HCxJonf-185	6
AE0118-237	5 6
AE0118-238	6
AE0118-239	5 6
AE0118-240	5 6
AE0118-243	6
AE0118-244	5 6
AE0118-245	6
AE0118-246	5 6
AE0118-249	6
AE0206-159	10 4
AE0206-160	10 4
AE0206-161	10 5
AE0206-162	12 5
AE0206-163	12 4
AE0206-164	10 4
AE0206-165	12 5
AE0206-167	10 4
AE0206-168	12 5
AE0206-169	12 4
AE0206-170	12 4
AE0210-146	5
AE0210-147	5 6
AE0210-149	5 6
AE0210-150	6
AE0210-151	5 6
AE0210-152	12 5
AE0210-153	5 6
AE0210-154	5 6
AE0210-157	6
AE0210-158	5 6
AE0210-159	5 6
AE0210-162	5
AE0210-163	5
AE0210-164	5 6
AE0210-165	6
AE0210-166	5 6
AE0210-168	5 6
AE0210-169	5 6
AE0210-170	5 6
AE0210-171	5 6
AE0210-172	5 6
AE0210-173	6
AE0210-174	5
AE0213-175	6 7
AE0213-176	5 7
AE0213-177	5
AE0213-178	5
AE0213-179	6 7
AE0213-180	6 7
AE0213-181	5
AE0213-182	5
AE0213-183	5
AE0213-186	6 7
AE0213-187	5
AE0213-190	5 6
AE0213-193	5 7
AE0213-194	5 7
AE0213-195	6 7
AE0213-196	5
AE0213-197	6 7
AE0213-198	10 5
AE0213-199	6 7
AE0213-200	5 6
AE0213-201	6 7
AE0213-202	5 6
AE0213-205	6 7
AE0213-206	5 7
AE0251-323	5 6
AE0251-325	4 5
AE0251-327	4 5
AE0251-329	4 6
AE0251-330	4 6
AE0251-331	4 5
AE0251-342	4 5
AE0251-343	5 6
AE0406-239	6
AE0406-254	6
AE0406-258	6
AE0406-259	6
AE0406-263	5 6
AE0406-264	5 6
AE0406-266	5 6
AE0406-271	6
AE0406-274	6
AE0406-278	5 6
AE0406-281	6
AE0406-286	5 6
AE0406-288	5 6
AE0406-289	5 6
AE0406-294	5 6
AE0406-298	5 6
Minneiska	12 6
PRI 612-1	4 6
Arlet	4 5
Co-op 39	12 4
Pinova	4
Scired	4 5
Scifresh	4 5
0409-0025	5 6
0409-0026	5 6
0409-0027	5 6
0409-0031	5 6
0409-0033	5 6
0409-0047	5 6
G-14-050	10 4
G-14-052	10 4
G-14-054	10 4
G-14-055	10 4
G-14-056	4
G-14-057	10 4
G-14-059	10 4
G-14-060	4
G-14-061	4
G-14-062	4
G-14-064	4
G-14-065	10 4
G-14-069	10 4
G-14-067	10 4
G-14-068	10 4
G-14-071	10 4
G-14-073	10 4
G-14-074	4
G-14-075	10 4
G-14-076	10 4
G-14-077	10 4
G-14-078	10 4
G-14-080	10 4
G-09-232	4 7
G-09-233	4 5
G-09-234	6 7
G-09-235	5 6
G-09-236	6 7
G-09-237	5 6
G-09-238	4 5
G-09-239	6 7
G-09-240	6 7
G-09-241	6 7
G-09-242	4 7
G-09-243	6 7
G-09-245	4 7
G-09-246	6 7
G-09-258	4 5
G-09-259	4 5
G-09-260	4 5
G-09-261	5 6
G-09-262	4 5
G-09-263	6 7
G-09-264	4 7
G-09-265	4 5
G-09-266	4 5
G-09-267	6 7
G-09-268	4 7
Wijcik McIntosh	24 49
Beauty of Bath	6
Priam	10 4
Northern Spy	6 7
Co-op 15	4 7
MN 1702	4
WA 2	4 5
WA 5	10 4
Pitmaston Pineapple	24 4
0411-0023	4 5
AE0250-086	4 6
AE0250-087	4
AE0250-089	4
AE0250-090	4
AE0250-092	5 6
AE0250-093	4 6
AE0250-094	4 6
AE0250-095	5 6
Sonya	4
Co-op 38	4 5
AE0250-096	10 12
AE0250-327	10 7
Co-op 30	4 7
Jonagrimes	3 6
AE0211-036	5 7
G-07-039	5
PRI 14-152	4 7
PRI 47-176	6 7
G-07-041	10
BC-8S-27-43	4 5
AE0250-091	5 6
AE0250-097	5 6
AE0250-325	5 6
AE0250-326	5 6
AE0250-329	5 6
AE0250-333	5 6
AE0250-334	5 6
AE0250-335	5 6
AE0250-336	5 6
AE0250-338	5 6
AE0250-341	5 6
AE0211-038	5
AE0211-043	6 7
AE0211-045	5 6
AE0211-051	6 7
G-07-010	10 5
G-07-019	4 5
G-07-020	4 5
G-07-032	10 5
G-07-033	10 4
G-07-034	10 4
G-07-035	4 5
G-07-044	4 5
AE0211-053	10 5
AE0211-054	12 7
AE0250-088	12 6
AE0250-324	10 6
AE0250-328	12 6
AE0250-331	10 6
AE0250-332	12 6
AE0250-337	10 6
AE0250-339	12 6
Minnewashta	10 12
Autumn Crisp	4 7
G-14-066	10 4
Lu1-11-010	12
Lu1-11-013	12 5
Lu1-11-016	12
Lu1-11-017	12 5
Lu1-11-018	12 5
NJ 90	5
Lord Lambourne	10 40
Antonovka GH	12 51
Grimes Golden	3 4
Kidds Orange Red	10 4
Malus baccata Hansen #2	10 7
Malus baccata Jackii	4
Summerred	47 6
William's Pride	12 5

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Mdo-HB-13-10	Apple-RosBREED-3.9K-2019	13	10.7	10.7

Projects


Project Name
RosBREED_Apple_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53
RosBREEDSNP_SNP_AC_3832821_Lg13_00565_MAF20_319143_exon2	A	A	A	A	A	A	A	A	A	B	B	A	A	-	-	-	-	A	-	-	A	A	A	B	-	A	A	-	-	B	B	-	-	A	B	B	A	B	B	A	A	B	A	A	A	-	A	B	A	B	A	A
RosBREEDSNP_SNP_GA_3813153_Lg13_00980_MAF30_893444_exon1	-	-	B	B	B	A	-	-	A	-	B	A	B	B	A	B	A	B	B	A	-	B	B	-	B	B	A	B	B	B	-	-	-	-	-	-	-	A	B	A	B	B	B	A	A	B	A	B	A	B	-	-
RosBREEDSNP_SNP_GA_3853770_Lg13_00565_MAF20_208768_exon2	-	-	B	B	B	B	-	-	A	-	null	-	-	B	-	-	B	B	B	B	-	B	B	-	-	-	-	B	null	-	-	A	B	B	B	null	B	null	B	B	A	B	B	A	B	B	A	null	B	B	-	-
RosBREEDSNP_SNP_TC_3856174_Lg13_00565_MAF30_1667608_exon5	A	B	A	B	A	B	B	A	B	B	B	B	A	A	B	A	B	-	-	-	-	A	B	-	-	A	B	A	B	A	A	-	-	-	-	B	A	B	A	A	A	-	-	-	-	B	A	B	A	B	-	-
RosBREEDSNP_SNP_TG_3850600_Lg13_00565_MAF30_1674510_exon2	-	-	A	A	B	A	A	B	A	-	B	A	A	A	A	A	A	A	A	A	-	-	B	-	-	-	-	B	B	B	-	-	-	-	-	-	-	B	B	B	A	B	B	A	A	A	A	A	A	B	B	A

Alignments

Feature Name	Type	Location	Analysis
Chr13	chromosome	Chr13:4240298..4322874.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation