Mdo-HB-12-7

Haplotype Block Overview
Name Mdo-HB-12-7
Species Malus x domestica
Stock Haplotype [view all 427]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 4 7
Rome Beauty Law 14 15
Jonafree 14 5
Redfree 11 5
Spartan 4 6
Wagener 15 6
Worcester Pearmain 4 7
Tsugaru 5
Golden Delicious 4 5
Fuji 4 6
Empire 4 6
Gala 4 6
Honeycrisp 5 6
Elstar 4 5
Marshall McIntosh 4
Cripps Pink 11 5
Granny Smith 11 6
Jonathan 5 6
Ralls Janet 10 4
Delicious 6 9
Discovery 59 7
Prima 15 5
Fiesta 15 7
Ingrid Marie 4 5
Idared 15 5
Esopus Spitzenburg 4 6
Braeburn 4 6
Sansa 4 6
Lodi 5 78
James Grieve 4 79
Cripps Red 11 5
Burgundy 4 5
Akane 4 5
Ambrosia 4 6
Aurora Golden Gala 4 9
Beacon 5
Ben Davis 4 5 6
Cameo 4 6
Chinook 4 5
Clivia 11 4
Co-op 17 20 6
Co-op 18 4 56
Dayton 15 5
Delblush 4 5
Delorgue 4 5
Dolgo 16 46
Geheimrat Dr. Oldenburg 11 51
Duchess of Oldenburg 5
Early Cortland 4 5
Empress 4 5
F2 26829-2-2 15 4
Fantazja 4
Fireside 5 6
Fortune 6 7
Frostbite 5 6
Ginger Gold 4 5
GMAL 4327 5 7
GMAL 4328 5 7
GMAL 4329 5
GMAL 4332 5 7
Goodland 4 9
Haralson 43 5
Honeygold 4 43
Hudson 6
Jersey Black 4
Jonamac 4 5
Keepsake 5 6
Kerr 16 43
Lady Williams 11 4
Liberty 4
Linda 4 5
Liveland Raspberry 15 46
Longfield 4 5
Macoun 4
Malinda 43 5
Mantet 4
Melba 4 46
Melrose 6 9
MN 1627 4 5
MN 1628 6
MN 1691 6 9
MN 1706 5
MN 1708 5
MN 1760 60
MN 1764 5
MN 1789 5 9
MN 1802 43 5
MN 1836 4 6
MN 1837 4 9
MN 1839 4 6
MN 1888 5 9
MN 1899 4 5
MN 1940 5 9
MN 2016 4 9
AA-44 11 4
Monroe 15 5
Montgomery 4 78
Nicola 5 6
NJ 31 14
NJ 53 5
Oriole 15 5
PRI 14-126 4 5
PRI 14-510 4 5
PRI 1661-2 4 5
PRI 54-12 4 5
PRI 855-102 5
Primula 4 5
Raritan 66
Regent 4 43
Russian Seedling 5
Sawa 4
Sciros 4 5
Sharon 4
Silken 4
Wildung 4 6
Splendour 5 9
State Fair 4 5
NJ 55 4
Co-op 29 5 51
Sunrise 4
Sweet Sixteen 5 7
Topaz 7 79
Vista Bella 5
Wealthy 5
Winesap 6 8
Winter Banana 5 51
Yellow Newtown 6 64
Yellow Transparent 11 5
0407-0001 4
0407-0005 4
0407-0006 15 4
0407-0007 15 4
0407-0008 4
0408-0003 4 9
0408-0004 4 9
0408-0005 4
0408-0007 4
0408-0008 4 9
0408-0010 4
0408-0011 4 9
0408-0014 4
0408-0015 4 9
0409-0022 4 5
0409-0024 5 9
0409-0028 4 6
0409-0030 4 6
0409-0032 4 6
0409-0035 4 6
0409-0036 6 9
0409-0038 4 5
0409-0039 5 9
0409-0040 6 9
0409-0043 4 6
0409-0045 4 5
0410-0002 11 9
0410-0003 11 4
0410-0005 4 6
0410-0006 6 9
0410-0010 6 9
0410-0011 11 4
0410-0012 6 9
0410-0013 6 9
0410-0015 4 6
0410-0017 11 4
0410-0018 11 4
0414-0010 15 5
0414-0015 15 5
0414-0017 15 5
0414-0018 4 6
0414-0019 4 5
0414-0020 4 5
0414-0021 4 5
0415-0001 4 5
0415-0004 4 6
0415-0005 4 6
0415-0011 4 5
0415-0012 4 5
0415-0013 4 6
0415-0014 5 7
0415-0016 4 5
0415-0017 4 5
0415-0019 4 6
0415-0020 4 5
0415-0025 4 5
AE_HCxJonf-145 5 6
AE_HCXJonf-148 5
AE_HCxJonf-157 14 6
AE_HCXJonf-162 14 6
AE_HCXJonf-168 4 5
AE_HCxJonf-175 14 6
AE_HCxJonf-183 5 6
AE_HCxJonf-185 5 6
AE0118-237 4 5
AE0118-238 43 6
AE0118-239 4 5
AE0118-240 4 5
AE0118-243 4 5
AE0118-244 4 5
AE0118-245 4 6
AE0118-246 4 6
AE0118-249 4 5
AE0206-159 5 9
AE0206-160 5 9
AE0206-161 4 9
AE0206-162 5 9
AE0206-163 5
AE0206-164 4 9
AE0206-165 5
AE0206-167 4 9
AE0206-168 4 5
AE0206-170 4 5
AE0210-146 4 5
AE0210-147 4 5
AE0210-149 4 5
AE0210-150 4 5
AE0210-151 4 5
AE0210-152 4 9
AE0210-153 4 5
AE0210-154 4 5
AE0210-157 4 5
AE0210-158 4 5
AE0210-159 4 5
AE0210-162 4 5
AE0210-163 4 5
AE0210-164 4 5
AE0210-165 4 5
AE0210-166 4 5
AE0210-168 4 5
AE0210-169 4 5
AE0210-170 4 5
AE0210-171 4 5
AE0210-172 4 5
AE0210-173 4 5
AE0210-174 4 5
AE0213-175 4 7
AE0213-176 5 7
AE0213-177 5
AE0213-178 4 5
AE0213-179 5
AE0213-180 4 5
AE0213-181 5
AE0213-182 5
AE0213-183 4 5
AE0213-186 4 5
AE0213-187 4 5
AE0213-190 4 7
AE0213-193 4 7
AE0213-194 4 7
AE0213-195 5 7
AE0213-196 5
AE0213-197 4 7
AE0213-198 5 9
AE0213-199 5 7
AE0213-200 4 5
AE0213-201 4 7
AE0213-202 5
AE0213-205 4 5
AE0213-206 4 5
AE0251-323 5 7
AE0251-325 5
AE0251-327 5 7
AE0251-329 5 7
AE0251-330 5
AE0251-331 5
AE0251-342 4 7
AE0251-343 5 7
AE0406-239 4 5
AE0406-254 4 6
AE0406-258 4 5
AE0406-259 4 5
AE0406-263 4 5
AE0406-264 4 6
AE0406-266 4 5
AE0406-271 4 6
AE0406-274 4 5
AE0406-278 4 5
AE0406-281 4 5
AE0406-286 4 6
AE0406-288 4 6
AE0406-289 4 6
AE0406-294 4 6
AE0406-298 4 5
Minneiska 5 9
NJ 303955 4
PRI 612-1 5 9
Arlet 15 4
Co-op 39 15 5
Pinova 4
Scired 5 6
Scifresh 4
0409-0025 4 5
0409-0026 4 5
0409-0027 6 9
0409-0031 6 9
0409-0033 5 9
0409-0047 5 9
G-14-050 4 6
G-14-052 4 5
G-14-054 4 5
G-14-055 4 5
G-14-056 4 5
G-14-057 4 5
G-14-059 4 5
G-14-060 4 5
G-14-061 4 6
G-14-062 4 6
G-14-064 4 5
G-14-065 4 6
G-14-069 4 6
G-14-067 4 6
G-14-068 4 5
G-14-071 4 6
G-14-073 4 6
G-14-074 4 6
G-14-075 4 5
G-14-076 4 6
G-14-077 4 5
G-14-078 4 6
G-14-080 4 6
G-09-233 4 5
G-09-234 4 5
G-09-235 5 6
G-09-236 4
G-09-237 4 5
G-09-238 5 6
G-09-239 5 6
G-09-240 4
G-09-241 4
G-09-242 4
G-09-243 4
G-09-245 4
G-09-246 4 5
G-09-258 4 6
G-09-259 4
G-09-260 4 5
G-09-261 4
G-09-262 4
G-09-263 4 5
G-09-264 4
G-09-265 4 6
G-09-266 4 5
G-09-267 4
G-09-268 4
0408-0021 4 9
Wijcik McIntosh 4
Beauty of Bath 59 62
Priam 5
Northern Spy 6 7
Co-op 15 15 5
MN 1702 5
WA 2 4 5
WA 5 5
Pitmaston Pineapple 41 6
0411-0011 4
0411-0017 4
0411-0023 4
AE0250-086 5
AE0250-087 4 5
AE0250-089 5
AE0250-090 4 7
AE0250-092 5
AE0250-093 5
AE0250-094 4 7
AE0250-095 5 7
Sonya 4 6
Co-op 38 5 6
AE0250-096 5 9
AE0250-327 15 6
Co-op 30 4
Jonagrimes 4 5
AE0211-036 5
G-07-039 5 6
PRI 14-152 15 4
PRI 47-176 4 5
G-07-041 6
BC-8S-27-43 4 5
AE0250-091 6 7
AE0250-097 5 7
AE0250-325 5 6
AE0250-326 5 6
AE0250-329 5 7
AE0250-334 5
AE0250-335 5 6
AE0250-336 5
AE0250-338 5
AE0250-341 5 6
AE0211-038 5
AE0211-043 5
AE0211-045 5 7
AE0211-051 5
G-07-010 11 4
G-07-014 4 6
G-07-015 4 6
G-07-019 11 4
G-07-020 6
G-07-024 11 4
G-07-032 11 4
G-07-033 4 6
G-07-034 4 6
G-07-035 6
G-07-044 6
AE0211-053 5
AE0211-054 4 5
AE0250-088 5 9
AE0250-324 5 9
AE0250-328 6 9
AE0250-331 5 9
AE0250-332 6 9
AE0250-337 5
AE0250-339 6 9
Minnewashta 5 9
Autumn Crisp 5
G-14-066 4 5
Lu1-11-010 4
Lu1-11-013 4 6
Lu1-11-016 4 6
Lu1-11-017 4 6
Lu1-11-018 4 6
NJ 90 14 4
Lord Lambourne 7 79
Antonovka GH 4 5
Grimes Golden 2 4
Kidds Orange Red 6 7
Malus baccata Hansen #2 16 5
Malus baccata Jackii 11 72
Summerred 5 73
William's Pride 11 4
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-12-7Apple-RosBREED-3.9K-2019125.076.42
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 2345678910111213141516171819202122232425262728293031323334353637383940414243444546474849505152535455565758596061626364656667686970717273747576777879
GDsnp01615ABBAAAAAAAAABAA---AA------BA--AAABA---BAAB-AAAAAAA--AAAA-AAAAAABAABA--ABA---AA
RosBREEDSNP_SNP_AC_3025133_Lg12_01615_MAF30_MDP0000260981_exon1AAAAABBBBB--ABB---BAAAAAAB-----BAABAB-AAAAA-AAABBBBABBABAA----AABBAABAB--BBABB
RosBREEDSNP_SNP_CA_2958778_Lg12_RosCOS1934_MAF20_1627814_exon9BBBBBAAAABBBBBBB--BBBBBBBABBABABBBABABBBBABABABBBB--BABABB-B--BBBBBB--B--BABAB
RosBREEDSNP_SNP_CA_2980590_Lg12_01615_MAF50_1650253_exon1--BBAA-A-BBABAB-ABAAABBABABAABAAAAB---BAAB-A-A---A--AABA-A-AAABAAABB--BBBB--AA
RosBREEDSNP_SNP_CA_3007964_Lg12_01615_MAF10_290569_exon1BBBBBAABBBBBBBBB--BBBBBBBBBBBBBBBBBBBBBBBBBABB-BBB----BABB-B--BB-ABB--A--B--Bnull
RosBREEDSNP_SNP_CT_2956505_Lg12_RosCOS1934_MAF30_MDP0000283764_exon13ABBBAABBBBBAABB-------BABBBBBBBABBBBBB-B-A-ABABBBB--BAAB-A-BAABABABB--BBBBBABB
RosBREEDSNP_SNP_GA_2970938_Lg12_RosCOS1934_MAF30_1681178_exon3BBBBBBBAABBBBAA---ABBBBB-ABAABABBBBBB-BAAB-BBBBBABABBBBBBABBBAABAB----BBBBABBB
Alignments
Feature NameTypeLocationAnalysis
Chr12 chromosome Chr12:3063720..3132494. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation