Mdo-HB-12-6

Haplotype Block Overview

Name	Mdo-HB-12-6
Species	Malus x domestica
Stock Haplotype	[view all 421]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Cox's Orange Pippin	2 4
Rome Beauty Law	3 9
Jonafree	3 4
Redfree	2 4
Spartan	2 3
Wagener	2 9
Worcester Pearmain	2 4
Tsugaru	2 4
Golden Delicious	2
Fuji	2 3
Empire	2 3
Gala	2 3
Honeycrisp	2 3
Elstar	2 4
Marshall McIntosh	2
Cripps Pink	2
Granny Smith	2 3
Jonathan	3 4
Delicious	3 5
Discovery	24 4
Prima	2 9
Fiesta	4 9
Ingrid Marie	2 4
Idared	4 9
Esopus Spitzenburg	2 3
Braeburn	2 3
Sansa	2 3
Lodi	15 4
James Grieve	15 2
Cripps Red	2
Burgundy	2 4
Akane	2 4
Ambrosia	2 3
Aurora Golden Gala	2 5
Beacon	2
Ben Davis	2 3
Cameo	2 3
Chinook	2
Clivia	2 4
Co-op 17	3 9
Co-op 18	15 2
Dayton	2 9
Delblush	2
Delorgue	2
Dolgo	2
Geheimrat Dr. Oldenburg	28 4
Duchess of Oldenburg	2
Early Cortland	2 4
Empress	2 4
F2 26829-2-2	2 9
Fantazja	2
Fireside	3 4
Fortune	3 4
Frostbite	2
Ginger Gold	2 4
GMAL 4327	2 4
GMAL 4328	2 4
GMAL 4329	2
GMAL 4332	2 4
Goodland	17 2
Haralson	4
Honeygold	2 4
Hudson	3
Jonamac	2 4
Keepsake	2 3
Kerr	2 4
Lady Williams	2
Liberty	2
Linda	2
Liveland Raspberry	2 9
Longfield	2
Macoun	2
Malinda	2 4
Mantet	2
Melba	2
Melrose	3 5
MN 1627	2
MN 1628	2 3
MN 1691	17 3
MN 1706	2
MN 1708	2
MN 1760	2 4
MN 1764	2
MN 1789	17 2
MN 1802	2
MN 1836	2 3
MN 1837	17 2
MN 1839	2 3
MN 1888	17 2
MN 1899	2 4
MN 1940	17 4
AA-44	2
Monroe	4 9
Montgomery	15 2
Nicola	2 3
NJ 31	3
NJ 53	2
Oriole	4 9
PCF-3-120	2
PRI 14-126	2
PRI 14-510	2
PRI 1661-2	2
PRI 855-102	4
Primula	2 4
Raritan	9
Regent	2 4
Russian Seedling	2 4
Sawa	2
Sciros	2 3
Sharon	2
Silken	2 4
Wildung	2 3
Splendour	2 5
State Fair	2 4
NJ 55	2
Co-op 29	15 2
Sunrise	2 4
Sweet Sixteen	2 4
Topaz	15 4
Vista Bella	2 4
Wealthy	2 4
Winesap	3 4
Winter Banana	15 2
Yellow Newtown	2 24
Yellow Transparent	2 4
0407-0001	2
0407-0005	2
0407-0006	2 9
0407-0007	5 9
0407-0008	2
0408-0003	2 5
0408-0004	2 5
0408-0005	2
0408-0007	2
0408-0008	2 5
0408-0010	2
0408-0011	2 5
0408-0014	2
0408-0015	2 5
0409-0022	2 5
0409-0024	2 5
0409-0028	2 3
0409-0030	2 3
0409-0032	2 3
0409-0035	2 3
0409-0036	3 5
0409-0038	2
0409-0039	2 5
0409-0040	3 5
0409-0043	2 3
0409-0045	2
0410-0002	2 5
0410-0003	2
0410-0005	2 3
0410-0006	3 5
0410-0010	3 5
0410-0011	2
0410-0012	3 5
0410-0013	3 5
0410-0015	2 3
0410-0017	2
0410-0018	2
0414-0010	2 9
0414-0015	2 9
0414-0017	2 9
0414-0018	2 3
0414-0019	2
0414-0020	2
0414-0021	2
0415-0001	2
0415-0004	2 3
0415-0005	2 3
0415-0011	2
0415-0012	2
0415-0013	2 3
0415-0014	2 4
0415-0016	2
0415-0017	2
0415-0019	2 3
0415-0020	2
0415-0025	2
AE_HCxJonf-145	3 4
AE_HCXJonf-148	2 3
AE_HCxJonf-157	3
AE_HCXJonf-162	3
AE_HCXJonf-168	2
AE_HCxJonf-175	3
AE_HCxJonf-183	3 4
AE_HCxJonf-185	3 4
AE0118-237	2
AE0118-238	3 4
AE0118-239	2
AE0118-240	2
AE0118-243	2
AE0118-244	2
AE0118-245	2 3
AE0118-246	2 3
AE0118-249	2
AE0206-159	17 2
AE0206-160	17 2
AE0206-161	17 2
AE0206-162	17 2
AE0206-163	2 4
AE0206-164	17 2
AE0206-165	2 4
AE0206-167	17 2
AE0206-168	2 4
AE0206-169	2 4
AE0206-170	2 4
AE0210-146	2 4
AE0210-147	2
AE0210-149	2 4
AE0210-150	2
AE0210-151	2 4
AE0210-152	17 2
AE0210-153	2
AE0210-154	2
AE0210-157	2
AE0210-158	2
AE0210-159	2
AE0210-162	2
AE0210-163	2 4
AE0210-164	2
AE0210-165	2 4
AE0210-166	2
AE0210-168	2
AE0210-169	2
AE0210-170	2
AE0210-171	2
AE0210-172	2
AE0210-173	2 4
AE0210-174	2
AE0213-175	2 4
AE0213-176	4
AE0213-177	2 4
AE0213-178	2
AE0213-179	2 4
AE0213-180	2
AE0213-181	2 4
AE0213-182	2 4
AE0213-183	2
AE0213-186	2
AE0213-187	2
AE0213-190	2 4
AE0213-193	2 4
AE0213-194	2 4
AE0213-195	4
AE0213-196	2 4
AE0213-197	2 4
AE0213-198	4 5
AE0213-199	4
AE0213-200	2
AE0213-201	2 4
AE0213-202	2 4
AE0213-205	2
AE0213-206	2
AE0251-323	2 4
AE0251-325	2
AE0251-327	2 4
AE0251-329	2 4
AE0251-330	2
AE0251-331	2
AE0251-342	2 4
AE0251-343	2 4
AE0406-239	2 4
AE0406-254	3 4
AE0406-258	2 4
AE0406-259	2 4
AE0406-263	2
AE0406-264	3 4
AE0406-266	2 4
AE0406-271	2 3
AE0406-274	2 4
AE0406-278	2
AE0406-281	2
AE0406-286	3 4
AE0406-288	3 4
AE0406-289	3 4
AE0406-294	2 3
AE0406-298	2 4
Minneiska	17 2
NJ 303955	2
PRI 612-1	2 5
Arlet	2 9
Co-op 39	2 9
Pinova	2
Scired	2 3
Scifresh	2
0409-0025	2
0409-0026	2
0409-0031	3 5
0409-0033	2 5
0409-0047	2 5
G-14-050	2
G-14-052	2
G-14-054	2
G-14-055	2
G-14-056	2
G-14-057	2
G-14-059	2
G-14-060	2
G-14-061	2 3
G-14-062	2 3
G-14-064	2
G-14-065	2 3
G-14-069	2 3
G-14-067	2 3
G-14-068	2
G-14-071	2 3
G-14-073	2 3
G-14-074	2 3
G-14-075	2
G-14-076	2 3
G-14-077	2
G-14-078	2 3
G-14-080	2 3
G-09-232	2 3
G-09-233	2 4
G-09-234	2 4
G-09-235	3 4
G-09-236	2
G-09-237	2 4
G-09-238	3 4
G-09-239	3 4
G-09-240	2
G-09-241	2
G-09-242	2
G-09-243	2
G-09-245	2
G-09-246	2 4
G-09-258	3 4
G-09-259	2
G-09-260	3 4
G-09-261	2
G-09-262	2
G-09-263	2 4
G-09-264	2
G-09-265	2 3
G-09-266	2 4
G-09-267	2
G-09-268	2
0408-0021	2 5
Wijcik McIntosh	2
Beauty of Bath	22 24
Priam	2 4
Northern Spy	3 4
Co-op 15	2 9
MN 1702	2 4
WA 2	2
WA 5	2
Pitmaston Pineapple	3
0411-0011	2
0411-0017	2
0411-0023	2
AE0250-086	2
AE0250-087	2
AE0250-089	2
AE0250-090	2 4
AE0250-092	2
AE0250-093	2
AE0250-094	2 4
AE0250-095	2 4
Sonya	2 3
Co-op 38	2 3
AE0250-096	17 2
AE0250-327	3 9
Co-op 30	2
AE0211-036	2 4
G-07-039	2 3
G-07-041	3
BC-8S-27-43	2
AE0250-091	3 4
AE0250-097	2 4
AE0250-325	2 3
AE0250-326	2 3
AE0250-329	2 4
AE0250-333	2 4
AE0250-334	2
AE0250-335	2 3
AE0250-336	2
AE0250-338	2
AE0250-341	2 3
AE0211-038	2 4
AE0211-043	2 4
AE0211-045	4
AE0211-051	2 4
G-07-010	2
G-07-014	2 3
G-07-015	2 3
G-07-020	3
G-07-024	2
G-07-032	2
G-07-033	2 3
G-07-034	2 3
G-07-035	3
G-07-044	3
AE0211-053	4
AE0211-054	2 4
AE0250-088	17 2
AE0250-324	17 2
AE0250-328	17 3
AE0250-331	17 2
AE0250-332	17 3
AE0250-337	2 4
AE0250-339	17 3
Minnewashta	17 4
Autumn Crisp	2 4
G-14-066	2
Lu1-11-010	2
Lu1-11-013	2 3
Lu1-11-016	2
Lu1-11-017	2
Lu1-11-018	2 3
NJ 90	2 3
Lord Lambourne	15 4
Antonovka GH	2 4
Kidds Orange Red	3 4
Malus baccata Hansen #2	2
Malus baccata Jackii	2 4
Summerred	2
William's Pride	2

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Mdo-HB-12-6	Apple-RosBREED-3.9K-2019	12	3.76	4.64

Projects


Project Name
RosBREED_Apple_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28
RosBREEDSNP_SNP_AC_10476695_Lg1_RosCOS3195_MAF10_1682584_exon7	A	A	A	A	A	B	-	B	-	-	A	A	A	A	A	A	B	A	A	B	-	-	B	A	-	-	A
RosBREEDSNP_SNP_AG_10438643_Lg1_RosCOS3195_MAF50_MDP0000253600_exon1	A	A	B	B	A	B	-	B	-	-	-	-	B	B	-	A	-	-	B	B	A	A	A	-	B	A	A
RosBREEDSNP_SNP_AG_2341962_Lg12_262602_MAF40_262602_exon1	A	B	A	B	-	-	-	B	B	A	B	A	-	B	-	B	-	-	-	A	B	A	A	A	-	-	A
RosBREEDSNP_SNP_CA_10465558_Lg1_RosCOS3195_MAF10_1630665_exon1	B	B	B	A	B	B	B	B	-	-	-	-	A	B	B	A	-	-	B	B	-	-	B	B	A	B	A

Alignments

Feature Name	Type	Location	Analysis
Chr12	chromosome	Chr12:2449766..3877053.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation