Mdo-HB-12-44

Haplotype Block Overview

Name	Mdo-HB-12-44
Species	Malus x domestica
Stock Haplotype	[view all 426]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Cox's Orange Pippin	25 9
Rome Beauty Law	13
Jonafree	13
Redfree	103 104
Spartan	4 6
Wagener	26 9
Worcester Pearmain	3 9
Tsugaru	5 9
Golden Delicious	4 5
Fuji	4 9
Empire	4 6
Gala	4 9
Honeycrisp	5 9
Elstar	4
Marshall McIntosh	6
Cripps Pink	4 9
Granny Smith	12 9
Jonathan	13 9
Ralls Janet	4
Delicious	4 9
Discovery	5 9
Prima	13 5
Fiesta	25 9
Ingrid Marie	4 9
Idared	9
Esopus Spitzenburg	4 9
Braeburn	4 8
Sansa	13 4
Lodi	4 8
James Grieve	25 68
Cripps Red	4 9
Burgundy	5 9
Akane	13 9
Ambrosia	4
Aurora Golden Gala	4
Beacon	57 58
Ben Davis	20 4 5
Cameo	4 9
Chinook	4
Clivia	25 46
Co-op 17	13 9
Co-op 18	13
Dayton	13 5 9
Delblush	4 5
Delcorf	5 60
Delorgue	5 9
Dolgo	46 5
Geheimrat Dr. Oldenburg	119 46
Duchess of Oldenburg	5 6
Early Cortland	20 4 6
Empress	13 9
F2 26829-2-2	13 4
Fantazja	6 9
Fireside	4 9
Fortune	13 25
Frostbite	5 8
Ginger Gold	4 5
GMAL 4327	25 5
GMAL 4328	49 50
GMAL 4329	4 49
GMAL 4332	49 5
Goodland	5 6
Haralson	46 5
Honeygold	5
Hudson	6 9
Jersey Black	52 53
Jonamac	13 6
Keepsake	5 9
Kerr	46 5
Lady Williams	13 9
Liberty	4 6
Linda	4 9
Liveland Raspberry	4 73
Longfield	111 112
Macoun	53 6
Malinda	25 46
Mantet	5
Melba	6 73
Melrose	13 9
MN 1628	5 9
MN 1691	4 5
MN 1706	5 6
MN 1708	5
MN 1760	5 8
MN 1764	5
MN 1789	5
MN 1802	76 9
MN 1836	5
MN 1837	5
MN 1839	4 5
MN 1888	5
MN 1899	46 5
MN 1940	13 5
MN 2016	5 9
AA-44	4 5
Monroe	13 9
Montgomery	8
Nicola	4 9
NJ 31	13 9
NJ 53	13 9
Oriole	4 5
PCF-3-120	4 6
PRI 14-126	13 5
PRI 14-510	5
PRI 1661-2	5 6
PRI 54-12	4 5
PRI 855-102	13
Primula	5 73
Raritan	100 46
Regent	46 6
Russian Seedling	105 49
Sawa	5 9
Sciros	4
Sharon	5 6
Silken	4 5
Wildung	4 5
Splendour	4 9
State Fair	5
NJ 55	5 9
Co-op 29	13 4
Sunrise	4
Sweet Sixteen	5 9
Topaz	4 9
Vista Bella	9
Wealthy	5 9
Winesap	11 4
Winter Banana	106 107
Yellow Newtown	4
Yellow Transparent	4 46
0407-0001	4 5
0407-0005	4 9
0407-0006	4 9
0407-0007	4 5
0407-0008	4 5
0408-0003	4 5
0408-0004	4 5
0408-0005	13 4
0408-0007	13 4
0408-0008	13 4
0408-0010	13 4
0408-0011	4 5
0408-0014	13 4
0408-0015	4 5
0409-0022	4 9
0409-0024	4 9
0409-0028	4 9
0409-0030	4 5
0409-0032	4 5
0409-0035	4 5
0409-0036	4 9
0409-0038	4 5
0409-0039	4 9
0409-0040	4 5
0409-0043	4 5
0409-0045	4 5
0410-0002	12 4
0410-0003	4 9
0410-0005	4 9
0410-0006	12 4
0410-0010	12 4
0410-0011	4 9
0410-0012	4 9
0410-0013	12 4
0410-0015	12 4
0410-0017	12 4
0410-0018	12 4
0414-0010	9
0414-0015	5 9
0414-0017	5 9
0414-0018	13 5
0414-0019	5 9
0414-0020	13 5
0414-0021	5 9
0415-0001	13 9
0415-0004	13 5
0415-0005	5 9
0415-0011	13 5
0415-0012	13 5
0415-0013	5 9
0415-0014	5 9
0415-0016	5
0415-0017	13 5
0415-0019	13 9
0415-0020	5 9
0415-0025	13 5
AE_HCxJonf-145	13 9
AE_HCXJonf-148	13 5
AE_HCxJonf-157	13 9
AE_HCXJonf-162	13 5
AE_HCXJonf-168	4 5
AE_HCxJonf-175	13 9
AE_HCxJonf-183	13 5
AE_HCxJonf-185	13 9
AE0118-237	46 9
AE0118-238	5 6
AE0118-239	5
AE0118-240	5 6
AE0118-243	5 6
AE0118-244	5 6
AE0118-245	46 9
AE0118-246	46 9
AE0118-249	6 9
AE0206-159	5 9
AE0206-160	5 9
AE0206-161	5 9
AE0206-162	5 9
AE0206-163	5 9
AE0206-164	5 9
AE0206-165	5 9
AE0206-167	5 9
AE0206-168	5 9
AE0206-169	5 9
AE0206-170	5 9
AE0210-146	4
AE0210-147	4
AE0210-149	4
AE0210-150	4 49
AE0210-151	4
AE0210-152	4 5
AE0210-153	4
AE0210-154	4
AE0210-157	4
AE0210-158	4
AE0210-159	4
AE0210-162	4 49
AE0210-163	4 49
AE0210-164	4 49
AE0210-165	4
AE0210-166	4
AE0210-168	4
AE0210-169	4
AE0210-170	4 49
AE0210-171	4
AE0210-172	4 49
AE0210-173	4
AE0210-174	4
AE0213-175	4 49
AE0213-176	49 5
AE0213-177	49 5
AE0213-178	4 5
AE0213-179	4 5
AE0213-180	5
AE0213-181	49 5
AE0213-182	4 5
AE0213-183	4 49
AE0213-186	4 5
AE0213-187	4 5
AE0213-190	4 49
AE0213-193	4 5
AE0213-194	4 5
AE0213-195	5
AE0213-196	4 5
AE0213-197	4 49
AE0213-198	25 4
AE0213-199	4 5
AE0213-200	5
AE0213-201	4 49
AE0213-205	4 49
AE0213-206	49 5
AE0251-323	5 9
AE0251-325	9
AE0251-327	9
AE0251-329	9
AE0251-330	9
AE0251-331	5 9
AE0251-342	9
AE0251-343	9
AE0406-239	5 9
AE0406-254	5 9
AE0406-258	4 9
AE0406-259	4 9
AE0406-263	5
AE0406-264	5
AE0406-266	5
AE0406-271	5 9
AE0406-274	5
AE0406-278	4 9
AE0406-281	5
AE0406-286	5 9
AE0406-288	5
AE0406-289	4 9
AE0406-294	5
AE0406-298	4 5
Minneiska	5
NJ 303955	9
PRI 612-1	5 9
Arlet	5 9
Co-op 39	12 86
Pinova	25 4
Scired	9
Scifresh	4 8
0409-0025	4 5
0409-0026	4 5
0409-0027	4 9
0409-0031	4 9
0409-0033	4 5
0409-0047	4 5
G-14-050	25 9
G-14-052	4 9
G-14-054	4
G-14-055	4
G-14-056	4
G-14-057	4
G-14-059	25 9
G-14-060	25 9
G-14-061	25 4
G-14-062	25 4
G-14-064	4
G-14-065	4
G-14-069	25 9
G-14-067	4
G-14-068	25 4
G-14-071	25 9
G-14-073	25 4
G-14-074	4 9
G-14-075	25 4
G-14-076	4 9
G-14-077	4
G-14-078	4 9
G-14-080	4 9
G-09-232	4
G-09-235	5 8
G-09-236	4 8
G-09-237	5 8
G-09-238	4
G-09-239	4 5
G-09-240	5 8
G-09-241	4 5
G-09-242	5 8
G-09-243	4
G-09-245	4 8
G-09-246	4 8
G-09-258	4 5
G-09-259	4
G-09-260	5 8
G-09-261	4
G-09-262	4
G-09-263	4
G-09-264	4 5
G-09-265	5 8
G-09-266	5 8
G-09-267	4 8
G-09-268	4 8
0408-0021	4 5
Wijcik McIntosh	6
Beauty of Bath	5 84
Priam	13 5
Northern Spy	9
Co-op 15	9
MN 1702	5 9
WA 2	4
WA 5	4 9
Pitmaston Pineapple	4 42
0411-0011	5 9
0411-0017	5
0411-0023	5
AE0250-086	9
AE0250-087	5 9
AE0250-089	5 9
AE0250-090	9
AE0250-092	5 9
AE0250-093	5 9
AE0250-094	5 9
AE0250-095	9
Sonya	8 9
Co-op 38	4 9
AE0250-096	5
AE0250-327	4 5
Co-op 30	13 5
AE0211-036	4 49
G-07-039	13 5
PRI 47-176	13 4
G-07-041	4 9
BC-8S-27-43	9
AE0250-091	5
AE0250-097	5 9
AE0250-325	5
AE0250-326	25 5
AE0250-329	25 9
AE0250-333	5
AE0250-334	5
AE0250-335	25 5
AE0250-336	5
AE0250-338	5 9
AE0250-341	25 9
AE0211-038	49 5
AE0211-043	4 49
AE0211-045	49 5
AE0211-051	49 5
G-07-010	12 13
G-07-014	12 13
G-07-015	12 13
G-07-019	12 13
G-07-020	13 9
G-07-024	12 4
G-07-032	4 9
G-07-033	12 4
G-07-034	12 13
G-07-035	13 9
G-07-044	12 13
AE0211-053	4 5
AE0211-054	4 5
AE0250-088	5
AE0250-324	5
AE0250-328	5 9
AE0250-331	5
AE0250-332	5 9
AE0250-337	5 9
AE0250-339	5 9
Minnewashta	5
Autumn Crisp	13 4
G-14-066	25 9
Lu1-11-010	4 6
Lu1-11-013	4 5
Lu1-11-016	6 9
Lu1-11-017	5 9
Lu1-11-018	4 6
NJ 90	13 4
Lord Lambourne	68 9
Antonovka GH	5
Grimes Golden	2 4
Kidds Orange Red	9
Malus baccata Hansen #2	113 46
Malus baccata Jackii	114 115
Summerred	116 5
William's Pride	5 9

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Mdo-HB-12-44	Apple-RosBREED-3.9K-2019	12	64.31	65.35

Projects


Project Name
RosBREED_Apple_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119
GDsnp01647	-	-	B	A	B	-	null	A	-	-	null	null	-	-	A	A	-	null	B	-	-	A	null	null	null	-	-	B	A	-	-	A	null	-	-	-	null	A	null	A	null	A	null	-	A	-	-	null	null	-	-	-	-	-	-	null	A	-	B	A	A	A	-	-	null	A	B	A	B	A	B	A	null	A	A	-	-	-	-	-	-	B	B	A	A	B	null	A	A	null	-	-	-	A	null	null	A	A	A	A	null	null	A	null	null	A	-	A	null	null	A	null	A	null	B	A	null	B
RosBREEDSNP_SNP_AG_34951417_Lg12_01647_MAF10_MDP0000319777_exon30	-	-	A	A	A	A	B	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	B	A	-	A	A	A	A	A	A	-	-	-	A	A	A	A	A	B	A	B	B	A	A	-	A	B	A	-	A	A	A	A	B	A	B	-	-	-	-	-	-	-	-	A	A	-	-	-	-	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	B	B	A	A	A	A	A	A	A	A	A	A	A	-	-	B	A	A	A	A	A	-	B	A
RosBREEDSNP_SNP_CA_35097947_Lg12_01665_MAF20_MDP0000181669_exon9	-	-	B	B	B	B	A	B	B	B	B	A	A	B	B	A	-	B	B	-	-	B	B	A	A	-	B	B	B	A	A	B	A	B	A	-	A	B	A	B	B	B	B	B	B	B	B	A	B	A	-	A	-	-	B	A	B	A	-	-	B	B	-	-	A	B	B	B	-	-	B	B	A	B	A	-	-	-	-	-	-	B	-	-	A	B	A	B	B	B	B	B	B	B	B	A	B	B	B	B	A	A	B	A	B	B	B	B	A	B	A	B	-	-	-	B	B	B
RosBREEDSNP_SNP_CT_34921188_Lg12_01647_MAF20_827644_exon1	B	B	B	B	B	B	B	B	B	B	B	A	A	A	A	B	-	B	B	B	B	B	A	A	A	A	B	B	B	A	A	B	B	B	B	-	A	B	A	B	A	-	-	A	B	B	-	B	A	B	B	A	B	B	B	A	B	A	-	-	B	B	-	-	A	B	B	B	-	-	B	B	A	B	B	B	A	A	A	-	-	A	B	B	A	B	A	B	B	B	B	B	B	B	B	B	B	B	B	A	B	A	B	A	B	B	B	-	-	B	B	B	B	B	B	-	A	B
RosBREEDSNP_SNP_GA_34955890_Lg12_01647_MAF10_44800_exon1	-	-	B	B	B	B	A	B	B	B	B	B	B	B	B	B	B	B	B	B	B	B	B	A	B	-	B	B	B	B	B	B	A	B	A	B	B	B	B	B	A	B	A	A	B	B	-	B	A	B	-	B	B	B	B	A	B	A	-	-	-	-	-	-	-	-	B	B	-	-	-	-	B	B	B	B	B	B	B	B	B	A	B	B	B	B	B	B	A	B	B	B	B	B	A	A	B	B	B	B	B	B	B	B	B	B	B	-	-	A	B	B	B	B	B	-	A	B
RosBREEDSNP_SNP_GT_34960014_Lg12_01647_MAF50_1687749_exon2	A	B	B	B	B	B	A	A	B	A	A	A	A	A	B	A	-	B	A	A	B	A	A	A	A	A	B	B	A	A	A	A	A	B	A	-	A	A	-	-	A	-	-	A	A	B	-	A	A	A	A	A	B	B	A	A	A	A	-	-	B	A	-	-	A	B	A	-	B	A	B	A	-	-	B	B	A	A	A	B	A	A	B	B	B	B	-	-	A	A	B	B	A	A	A	A	B	B	B	B	A	A	B	A	A	B	-	-	-	A	A	B	B	B	B	A	A	A
RosBREEDSNP_SNP_GT_35103565_Lg12_01665_MAF30_1636547_exon1	B	B	B	B	B	B	A	B	B	B	A	A	A	A	A	B	-	B	A	B	B	B	B	A	A	A	B	B	B	A	A	B	A	B	A	-	A	B	A	B	A	B	A	A	B	B	-	A	B	A	A	A	B	B	B	B	A	A	-	-	B	B	-	-	A	B	B	B	-	-	B	B	A	B	A	B	A	A	A	-	-	B	-	-	B	-	A	B	B	A	-	-	A	-	B	A	B	B	B	A	B	A	B	B	B	A	B	-	-	B	A	A	B	B	-	-	B	B
RosBREEDSNP_SNP_TC_34953707_Lg12_01647_MAF40_MDP0000308660_exon1	-	-	A	A	A	A	A	B	-	-	A	A	-	-	A	A	-	A	A	-	-	-	A	A	-	-	A	-	B	A	-	A	A	A	A	A	A	B	A	B	A	B	A	-	A	A	-	A	A	A	-	A	-	-	B	A	A	-	A	A	A	A	B	A	-	-	A	A	A	B	A	B	-	-	A	A	A	-	-	-	-	A	A	A	A	A	A	B	B	A	A	A	A	B	A	A	A	-	B	A	A	A	A	A	A	A	-	B	A	A	B	A	A	A	A	B	A	B

Alignments

Feature Name	Type	Location	Analysis
Chr12	chromosome	Chr12:31498705..31720341.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation