Mdo-HB-12-29

Haplotype Block Overview

Name	Mdo-HB-12-29
Species	Malus x domestica
Stock Haplotype	[view all 425]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Cox's Orange Pippin	5 9
Rome Beauty Law	9
Jonafree	9
Redfree	5 9
Spartan	5
Wagener	4 5
Worcester Pearmain	9
Tsugaru	5 9
Golden Delicious	4 5
Fuji	5
Empire	5
Gala	4 5
Honeycrisp	4 5
Elstar	4 6
Marshall McIntosh	5
Cripps Pink	5 9
Granny Smith	5 9
Jonathan	9
Ralls Janet	5
Delicious	5
Discovery	5 9
Prima	5 9
821	5 6
Fiesta	5
Ingrid Marie	6 9
Idared	5 9
Esopus Spitzenburg	5 9
Braeburn	5 9
Sansa	4 9
Lodi	5
James Grieve	5 9
Cripps Red	4 9
Burgundy	5 9
Akane	9
Ambrosia	4 5
Aurora Golden Gala	4 5
Beacon	5
Ben Davis	4 5
Cameo	4 5
Chinook	4 5
Clivia	5
Co-op 17	5 9
Co-op 18	9
Dayton	5 6 9
Delblush	4 5
Delcorf	6
Delorgue	6 9
Dolgo	5
Geheimrat Dr. Oldenburg	5 9
Duchess of Oldenburg	5 6
Early Cortland	4 5
Empress	5 9
F2 26829-2-2	5 9
Fantazja	5 9
Fireside	5 9
Fortune	5 9
Frostbite	5 6
Ginger Gold	4 5
GMAL 4327	5 6
GMAL 4328	5 6
GMAL 4329	5 6
GMAL 4332	6 9
Goodland	5
Haralson	5 6
Honeygold	4 6
Hudson	5
Jersey Black	2 6
Jonamac	5 9
Keepsake	5
Kerr	5 6
Lady Williams	5 9
Liberty	5
Linda	5 9
Longfield	5 6
Macoun	5 6
Malinda	5
Melba	5
Melrose	5 9
MN 1627	4 6
MN 1628	5 9
MN 1691	5
MN 1706	5
MN 1708	4 5
MN 1760	5
MN 1764	5 6
MN 1789	5 6
MN 1802	5
MN 1836	4 5
MN 1837	4 5
MN 1839	4
MN 1888	5 6
MN 1899	5 9
MN 1940	5 9
MN 2016	4 5
AA-44	5 9
Monroe	9
Montgomery	5
Nicola	5
NJ 31	9
NJ 53	5 9
Oriole	5 9
PCF-3-120	4 5
PRI 14-126	5 9
PRI 1661-2	5
PRI 54-12	5 9
PRI 855-102	9
Primula	5
Raritan	20 4
Regent	5
Russian Seedling	21
Sawa	5 9
Sciros	4 5
Sharon	5
Silken	4
Wildung	5
Splendour	5
State Fair	4 6
NJ 55	4 5
Co-op 29	5
Sunrise	4
Sweet Sixteen	5
Topaz	4 9
Vista Bella	5 9
Wealthy	6 9
Winesap	5
Winter Banana	5
Yellow Newtown	5
Yellow Transparent	5
0407-0001	4
0407-0005	4 5
0407-0006	4 5
0407-0007	4 5
0407-0008	4
0408-0003	5
0408-0004	4 5
0408-0005	4 9
0408-0007	5 9
0408-0008	4 5
0408-0010	5 9
0408-0011	4 5
0408-0014	5 9
0408-0015	5
0409-0022	4
0409-0024	4 5
0409-0028	4 5
0409-0030	4 5
0409-0032	4 5
0409-0035	4 5
0409-0036	4 5
0409-0038	4 5
0409-0039	4 5
0409-0040	5
0409-0043	5
0409-0045	4
0410-0002	5
0410-0003	5 9
0410-0005	4 5
0410-0006	5
0410-0010	5
0410-0011	4 9
0410-0012	5 9
0410-0013	5
0410-0015	4 5
0410-0017	4 9
0410-0018	4 5
0414-0010	5
0414-0015	5
0414-0017	4 5
0414-0018	4 5
0414-0019	5
0414-0020	4 9
0414-0021	4
0415-0001	5
0415-0004	5
0415-0005	5
0415-0011	4 9
0415-0012	5 9
0415-0013	5
0415-0014	5
0415-0016	4 5
0415-0017	4 9
0415-0019	5 9
0415-0020	5
0415-0025	4 9
AE_HCxJonf-145	5 9
AE_HCXJonf-148	4 9
AE_HCxJonf-157	5 9
AE_HCXJonf-162	5 9
AE_HCXJonf-168	4 5
AE_HCxJonf-175	5 9
AE_HCxJonf-183	4 9
AE_HCxJonf-185	5 9
AE0118-237	4 5
AE0118-238	4 5
AE0118-240	4 5
AE0118-243	4 5
AE0118-244	4 5
AE0118-245	5
AE0118-246	5
AE0118-249	5
AE0206-159	5
AE0206-160	5
AE0206-161	4 5
AE0206-162	4 6
AE0206-163	5 6
AE0206-164	4 5
AE0206-165	5
AE0206-167	4 6
AE0206-168	4 6
AE0206-169	5
AE0206-170	4 6
AE0210-146	4 5
AE0210-147	4 5
AE0210-149	4 5
AE0210-150	4 6
AE0210-151	4 5
AE0210-152	4 6
AE0210-153	4 5
AE0210-154	4 6
AE0210-157	4 5
AE0210-158	4 5
AE0210-159	4 5
AE0210-162	4 6
AE0210-163	4 6
AE0210-164	4 6
AE0210-165	4 5
AE0210-166	4 6
AE0210-168	4 5
AE0210-169	4 5
AE0210-170	4 6
AE0210-171	4 5
AE0210-172	4 5
AE0210-173	4 5
AE0210-174	4 5
AE0213-175	4 9
AE0213-176	5 6
AE0213-177	4 6
AE0213-178	4 9
AE0213-179	5 6
AE0213-180	4 6
AE0213-181	4 6
AE0213-182	5 9
AE0213-183	5 6
AE0213-186	4 9
AE0213-187	4 9
AE0213-190	4 6
AE0213-193	5 6
AE0213-194	5 6
AE0213-195	4 9
AE0213-196	5 9
AE0213-197	5 9
AE0213-198	5
AE0213-199	5 9
AE0213-200	4 6
AE0213-201	5 9
AE0213-202	5 6
AE0213-205	5 6
AE0213-206	4 6
AE0251-323	5
AE0251-325	4 5
AE0251-327	5
AE0251-329	5
AE0251-330	5
AE0251-331	4 5
AE0251-342	4 5
AE0251-343	5
AE0406-239	4
AE0406-254	4 5
AE0406-258	4
AE0406-259	4
AE0406-263	4
AE0406-264	4
AE0406-266	4
AE0406-271	5 6
AE0406-274	4
AE0406-278	4 5
AE0406-281	4
AE0406-286	4 5
AE0406-288	4
AE0406-289	4 5
AE0406-294	4 5
AE0406-298	4
Minneiska	4 5
NJ 303955	5
PRI 612-1	5
Arlet	4 5
Co-op 39	18 5
Pinova	4 5
Scired	5
Scifresh	4 9
0409-0025	4 5
0409-0026	4 5
0409-0027	5
0409-0031	5
0409-0033	4
0409-0047	4 5
G-14-050	4 5
G-14-052	5
G-14-054	4
G-14-055	4
G-14-056	4
G-14-057	5
G-14-059	5
G-14-060	4 5
G-14-061	4 5
G-14-062	5
G-14-064	4
G-14-065	4 5
G-14-069	5
G-14-067	5
G-14-068	4 5
G-14-071	5
G-14-073	4 5
G-14-074	4 5
G-14-075	4 5
G-14-076	4 5
G-14-077	4
G-14-078	4 5
G-14-080	4 5
G-09-232	5
G-09-233	5 9
G-09-234	5 9
G-09-235	5 9
G-09-236	5 9
G-09-237	4 9
G-09-238	5
G-09-239	5
G-09-240	4 9
G-09-241	4 9
G-09-242	4 5
G-09-243	5 9
G-09-245	5 9
G-09-246	5 9
G-09-258	4 5
G-09-259	4 9
G-09-260	5 9
G-09-261	5
G-09-262	5
G-09-263	5
G-09-264	4 5
G-09-265	4 5
G-09-266	4 9
G-09-267	4 9
G-09-268	5
0408-0021	4 9
Wijcik McIntosh	5
Beauty of Bath	5
Priam	5 9
Northern Spy	5 9
Co-op 15	5
MN 1702	5 9
WA 2	4 5
WA 5	5
Pitmaston Pineapple	5
0411-0011	4 5
0411-0017	4 5
0411-0023	4 5
AE0250-086	4 5
AE0250-087	5
AE0250-089	5
AE0250-090	5
AE0250-092	5
AE0250-093	5
AE0250-094	5
AE0250-095	5
Sonya	5 9
Co-op 38	4 5
AE0250-096	5 6
AE0250-327	5 6
Co-op 30	5 9
Jonagrimes	4 6
AE0211-036	4 5
G-07-039	19 4
G-07-041	5 9
BC-8S-27-43	4 5
AE0250-091	5
AE0250-097	4 5
AE0250-325	4 5
AE0250-326	4 6
AE0250-329	5
AE0250-333	4 6
AE0250-334	4 5
AE0250-335	5 6
AE0250-336	4 5
AE0250-338	5
AE0250-341	5 6
AE0211-038	5
AE0211-043	5 6
AE0211-051	5
G-07-010	5 9
G-07-014	5 9
G-07-015	5 9
G-07-019	5 9
G-07-020	4 9
G-07-024	5 9
G-07-033	5 9
G-07-034	5 9
G-07-035	4 5
G-07-044	5 9
AE0211-053	5
AE0211-054	4 6
AE0250-088	4 5
AE0250-324	4 6
AE0250-328	5
AE0250-331	4 6
AE0250-332	5
AE0250-337	4 6
AE0250-339	5 6
Minnewashta	5 6
Autumn Crisp	4 9
G-14-066	5
Lu1-11-010	5
Lu1-11-013	5
Lu1-11-016	4 5
Lu1-11-017	4 5
Lu1-11-018	5
NJ 90	5 9
Lord Lambourne	9
Antonovka GH	5 6
Grimes Golden	2 4
Kidds Orange Red	5
Malus baccata Hansen #2	5 6
Malus baccata Jackii	5
Summerred	5 6
William's Pride	5 6

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Mdo-HB-12-29	Apple-RosBREED-3.9K-2019	12	46.75	46.75

Projects


Project Name
RosBREED_Apple_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21
GDsnp01798	B	A	A	B	A	-	-	B	B	-	-	B	A	B	A	-	A	B	B	A
RosBREEDSNP_SNP_AG_24014859_Lg12_01798_MAF30_17113_exon1	-	-	A	A	A	A	A	B	-	-	A	A	-	B	-	B	B	B	A	A
RosBREEDSNP_SNP_TC_23562759_Lg12_108927_MAF10_108927_exon1	-	-	A	A	B	B	A	A	A	A	-	-	B	-	A	A	B	B	B	-

Alignments

Feature Name	Type	Location	Analysis
Chr12	chromosome	Chr12:22481907..22910289.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation