Pav-HB-06-3

Haplotype Block Overview

Name	Pav-HB-06-3
Species	Prunus avium
Stock Haplotype	[view all 518]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Summit	2
Lambert	2 5
Regina	13 3
Ambrunes	3 6
Lapins	2 6
Stella	2 5
Sweetheart	6
Van	2 6
Schneiders	13 6
Bing	5 6
Rainier	5 6
5.18.25-001	2 6
5.3.1-001	11 6
5.3.1-002	13 2
Benton	3 5
Brooks	11 5
Cashmere	3 5
Chelan	2 3
Chinook	5 6
Cowiche	3
Gil Peck	2 5
Glacier	2 3
Kiona	2 5
Mildew Immune Mazzard #17	3
Mildew Immune Mazzard #23	3
Newstar	5 6
NY 54	3
PMR-1	2 6
Sato Nashiki	3 5
Schmidt	2 3
Selah	2 5
Tieton	11 2
Ulster	2 5
Vic	3 6
Windsor	3
23_1_47	3
23_2_46	3
23_3_24	3
23_3_28	3
23_3_40	3
23_5_17	2 3
23_8_24	3
23_8_45	3
4.10.19-001	2 6
4.10.19-002	11 2
4.10.19-003	11 2
4.10.19-004	11 2
4.10.19-005	2 3
4.10.19-006	11 2
4.10.19-008	11 2
4.10.19-009	11 2
4.10.19-010	11 6
4.10.19-011	2 6
4.10.2-001	6
4.10.2-002	2 3
4.10.2-004	2 3
4.10.2-005	2 3
4.10.2-006	2 3
4.10.2-008	2 6
4.10.2-009	3 6
4.10.2-010	6
4.10.5-001	3 6
4.10.5-002	2 3
4.10.5-003	2
4.10.5-004	3 6
4.10.5-005	2 3
4.10.5-006	2
4.10.5-015	2 6
4.10.5-016	2 3
4.10.5-018	2 3
4.10.5-019	3 6
4.10.5-020	2 3
4.10.5-028	2 3
4.10.5-029	2 6
4.10.5-030	5 6
4.16.2-001	2 3
4.18.15-001	13 6
4.18.15-002	3 6
4.18.15-003	13 2
4.18.15-004	2 3
4.18.15-005	13 6
4.18.15-006	2 3
4.18.15-007	5 6
4.18.15-009	13 2
4.18.15-011	13 6
4.18.15-012	13 6
4.18.15-013	3 6
4.18.15-014	13 2
4.18.15-015	3 6
4.18.15-016	2 3
4.18.15-028	13 6
4.18.15-030	3 6
4.18.15-039	3 6
4.18.15-040	2 3
4.18.15-043	13 6
4.18.2-005	6
4.18.2-007	2 6
4.18.2-008	2 6
4.18.2-010	3 6
4.18.2-015	2 6
4.18.2-016	6
4.18.2-018	2 6
4.18.2-019	3 6
4.18.2-020	3 6
4.18.2-024	2 6
4.18.2-027	2 6
4.18.2-028	3 6
5.12.5-005	3 5
5.12.5-007	2 3
5.12.5-008	3 5
5.12.5-009	3 5
5.12.5-010	2
5.12.5-011	2 5
5.12.5-019	2 4
5.12.5-020	3 5
5.12.5-021	3
5.12.5-022	2 5
5.14.15-003	3 6
5.14.15-004	3 6
5.14.15-005	13 5
5.14.15-006	13 6
5.14.15-007	3 6
5.14.15-013	3 6
5.14.15-014	3 6
5.14.15-015	13 5
5.14.15-016	3
5.14.15-017	3
5.14.15-018	3 6
5.14.15-019	3 6
5.14.15-020	13 5
5.14.23-003	3 6
5.14.23-004	5
5.14.23-006	5 6
5.23.15-001	3
5.23.15-002	3
5.23.2-001	3 5
5.23.2-002	3
5.23.2-003	5 6
5.28.15-001	3
5.28.15-002	13 3
5.28.15-003	13 3
5.28.15-004	3
5.28.15-005	3
5.28.15-006	13 3
5.28.15-007	13 3
5.28.15-008	3
5.28.15-009	13 3
5.28.15-010	3
5.28.15-011	13 3
5.28.15-012	3
5.28.15-013	13 3
5.28.37-001	2 3
5.28.37-002	2 3
5.28.37-003	2 3
5.28.37-004	2 3
5.28.37-005	2 3
5.28.37-008	2 3
5.28.37-009	2 3
5.28.37-010	2 3
5.28.37-011	2 3
5.28.37-012	2 6
5.4.15-004	13 5
5.4.15-005	3 5
6.14.2-006	6
6.14.2-007	6
6.14.2-008	5 6
6.14.2-009	5 6
6.14.2-010	3 5
6.14.2-011	5 6
6.14.2-012	5 6
6.14.2-013	6
6.14.2-015	3 6
6.29.49-001	3 6
6.29.49-002	3 6
6.29.49-003	3 6
6.29.49-005	3 6
6.29.49-007	3 5
6.29.49-008	3 6
6.30.49-009	2 3
6.30.49-011	2 3
6.30.49-012	3 5
6.30.49-013	2 3
6.30.49-014	3 5
6.30.49-015	3 5
6.30.49-016	3 5
6.30.49-017	2 3
6.31.49-003	3 6
6.31.49-004	3 6
6.31.49-005	3 6
6.31.49-006	3 6
6.31.49-007	3 6
6.31.49-009	3 6
6.31.49-010	3 6
6.31.49-011	3 6
6.31.49-012	3 6
6.31.49-013	3 6
6.31.49-014	3 6
6.31.49-015	3 6
6.32.49-032	3 6
6.32.49-033	3 5
6.32.49-034	3 6
6.32.49-035	3 6
6.32.49-037	3 6
6.32.49-038	3 5
6.32.49-039	3 6
6.32.49-040	3 6
6.32.49-041	3 5
6.33.49-001	2 3
6.33.49-002	2 3
6.33.49-003	2 3
6.33.49-004	3 6
23-01-11	2 3
23-02-34	3
23-03-13	3
23-03-23	2 3
23-03-48	3
23-03-56	3
23-06-04	2 3
23-06-23	3
23-07-26	3
23-08-55	2 3
Dzherlo	3 6
Olympus	2 6
PC 7146-16	5 6
Kordia	11 13
Cristobalina	3
Vittoria	3
FR20T047	3
FR13T004	5 6
FR13T071	2 5
FR31T121	3 6
FR32T087	5 6
FR32T088	3 5
FR32T093	5 6
FR20T045	13 3
FR26T117	6
FR29T115	3 6
PC 9816-005	2 6
PC 9816-023	6
PC 9816-041	5 6
PC 9816-059	6
PC 9816-083	2 6
PC 9816-103	6
PC 9816-105	5 6
PC 9816-106	5 6
PC 9816-112	2 5
PC 9816-078	6
PC 9819-005	6
PC 9819-031	2 6
PC 9819-038	6
PC 9814-025	2 6
PC 9814-078	5 6
PC 9814-103	5 6
PC 9814-105	2 6
PC 9814-026	2 5
PC 9814-028	5 6
PC 9814-055	5 6
PC 9814-062	5 6
PC 9814-063	2 5
PC 9814-068	2 5
PC 9814-071	2 6
PC 9814-076	2 6
PC 9819-034	5 6
PC 9816-042	5
Emperor Francis	2 3
Black Republican	5 6
Krupnoplodnaya	2 3
Early Burlat	11 3
Venus	3 5
Moreau	3 6
Index	5 6
Sunburst	2
6.14.6-008	3 6
FR02T062	6
FR02T063	6
5.14.23.001	3 5
6.16.44-005	5
6.23.44-001	3 5
6.23.44-002	3 5
6.23.55-006	3 5
6.23.55-010	3 5
6.23.6-002	3
6.23.6-003	5
6.16.44-001	3 5
6.16.44-002	3 5
6.16.44-003	3 5
6.28.44-001	3
6.28.44-002	3
6.4.44-003	3 5
6.4.44-004	3 5
6.4.44-006	3 6
6.4.44-007	3 6
6.4.44-009	6
6.4.44-010	3 5
6.4.45-001	6
4.3.1-004	11 6
4.3.1-009	11 5
5.3.1-008	11 5
5.3.1-010	11 6
5.3.1-015	13
5.3.1-016	13 5
5.3.1-017	11 6
6.30.50-002	5 6
6.14.6-003	3 5
6.28.45-001	3
FR09T089	3 5
6.12.45-001	3 5
6.12.45-002	2 3
6.12.45-003	3 5
6.12.45-004	3 5
6.12.45-005	2 3
6.12.45-007	2 3
6.12.45-008	3
6.12.45-009	3 5
6.12.45-010	3 5
6.14.45-001	3 6
6.14.45-003	3 6
6.14.45-004	3 6
6.14.45-005	3 5
6.14.45-006	3
6.14.45-007	3 6
6.14.45-008	3 5
6.14.45-009	3 6
6.28.45-002	3
6.14.6-001	3 5
6.14.6-002	5 6
6.14.6-004	3 5
6.14.6-005	5 6
6.14.6-006	5 6
6.14.6-007	5 6
6.14.6-010	5 6
6.23.6-004	5 6
6.23.6-005	3
6.23.6-007	5 6
6.23.6-008	3 5
6.23.6-012	3 6
6.28.44-005	3 5
6.28.55-006	3 6
6.28.55-007	3 6
6.23.6-001	3 6
6.23.6-006	3 5
6.23.6-009	2 5
6.4.44-001	3 5
6.4.6-001	5 6
FR04T029	5 6
FR08T074	2 5
6.28.55-002	3 5
FR01T050	11 6
5.10.25-001	2 6
5.10.25-002	2 3
5.16.25-002	2 5
5.16.25-003	2 5
5.16.25-004	2 5
5.16.25-005	2
5.16.25-009	3 5
5.16.25-010	2 3
5.16.25-013	2 3
5.18.25-005	3 6
4.3.1-008	11 6
5.3.1-005	13 6
FR09T037	6
6.29.50-001	3 5
6.29.50-002	3 6
6.29.50-003	3 5
6.29.50-004	3 5
6.29.50-005	3 6
6.29.50-007	3 5
6.29.50-008	3 6
6.30.50-004	2 3
6.30.50-005	3 5
6.31.50-001	3 6
6.31.50-002	3 6
6.31.50-003	3 6
6.31.50-004	3 6
6.31.50-005	3 6
6.32.50-001	3 5
6.32.50-002	3 6
6.32.50-003	3
6.32.50-004	3 6
6.32.50-005	3 5
6.32.50-006	3 6
6.32.50-007	3 6
6.32.50-008	3 6
6.33.50-001	2 3
5.10.26-001	3 6
5.10.26-002	3 6
5.10.26-003	2 3
5.10.26-004	3 6
5.10.26-005	3 6
5.10.26-007	2 3
5.10.26-008	6
5.13.26-001	2 3
5.13.26-002	6
5.13.26-003	6
5.13.26-004	3 6
5.13.26-005	2 6
5.13.26-006	6
5.13.26-007	2 3
5.13.26-009	2 6
5.14.26-001	3 5
5.14.26-002	3 6
5.14.26-003	3 6
5.16.26-001	2 6
5.16.26-002	5 6
5.16.26-003	2 6
5.16.40-001	5 6
5.18.26-001	6
5.18.26-002	3 6
FR06T097	2 6
FR07T026	5 6
6.28.44-003	3 6
AA	5 6
PC 9816-069	5 6
PC 9816-079	2 5
PC 9816-096	2 6
PC 9816-104	6
PC 9816-114	5 6
PC 9817-097	2 6
4.18.15-010	2 3
4.18.15-042	2 3
4.18.15-047	3 6
4.18.15-048	13 6
4.3.1-003	13
4.3.1-005	13
4.3.1-006	13
4.3.1-007	11 13
5.3.1-009	11 3
5.3.1-011	13 3
5.3.1-012	11 13
5.3.1-013	13 3
5.3.1-014	13 3
5.4.15-001	3
5.4.15-002	13 6
5.4.15-003	13 5
FR01T070	3 6
FR49T083	3 6
5.16.17-003	2 5
5.16.25-006	2
5.16.25-008	2
5.16.25-012	2 5
5.20.6-001	5
6.16.44-008	2
6.4.45-003	5
6.4.6-004	2
6.4.6-006	2 5
6.4.6-007	5
6.4.6-008	2 3
6.4.6-009	3
5.16.17-001	2
5.16.17-004	2 5
6.14.17-001	2 6
6.14.17-002	2 6
6.14.17-003	2 5
6.14.17-004	2 5
6.14.17-005	2 6
FR02T024	2
4.14.17-001	6
5.13.26-008	2
6.28.44-004	11 3
4.3.1-001	11 6
5.3.1-007	11 6
5.3.1-018	13 6
5.10.40-001	3 6
5.10.40-002	2 5
5.10.40-003	5 6
5.10.40-004	3 6
5.10.40-005	2 3
5.10.40-007	2 5
5.10.40-008	2 3
5.10.40-009	3 6
5.10.40-010	5 6
5.10.40-011	2 5
5.10.40-012	2 3
5.10.40-013	2 5
5.10.40-014	2 5
5.10.40-015	2 3
5.10.40-016	3 6
5.10.40-017	2 5
5.13.40-002	2 3
5.13.40-003	2 3
5.13.40-004	5 6
5.16.40-003	5
5.16.40-004	3 5
6.30.50-001	2 3
6.30.50-003	3 5
6.10.55-001	3 6
6.10.55-002	2 3
6.10.55-003	2 3
6.10.55-004	3 6
6.10.55-005	2 3
6.10.55-006	3 6
6.10.55-007	3 6
6.10.55-008	2 3
6.10.55-009	3 6
6.10.55-010	3 6
6.16.55-001	2 3
6.16.55-002	2 3
6.23.17-001	3
6.23.55-002	3
6.23.55-005	3 5
6.23.55-007	3
6.23.55-008	3
6.28.55-001	3
6.28.55-003	3
6.28.55-004	3
6.28.55-005	3
5.13.40-001	2 3
5.16.25-001	2 6
5.18.25-004	6
5.3.1-006	2 3
6.16.44-004	2 6
6.16.44-006	5 6
6.16.44-007	3 5
6.16.44-009	14 2
6.23.17-003	5
6.23.17-004	3
Bertiolle	3 6
Napoleon	5 6

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Pav-HB-06-3	Sweet Cherry-RosBREED-1.6K-2019	6	5.21	8.68

Projects


Project Name
RosBREED_Sweet_Cherry_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19
RosBREED_snp_sweet_cherry_Pp6_02504154	B	B	A	A	B	-	-	A	B	B	A	B	B	B	A	-	-	B
RosBREED_snp_sweet_cherry_Pp6_03425466	A	B	B	B	B	B	B	B	B	B	A	B	A	-	B	B	B	-
RosBREED_snp_sweet_cherry_Pp6_03920291	A	B	A	B	A	B	A	-	-	B	A	A	B	A	A	B	A	-
RosCOS3322-362_snp_sweet_cherry_Pp6_03912624	A	B	A	B	A	B	A	-	-	A	A	B	B	A	B	-	-	-

Alignments

Feature Name	Type	Location	Analysis
Pp06	chromosome	Pp06:1289538..2704761.	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)