Pav-HB-05-1

Haplotype Block Overview

Name	Pav-HB-05-1
Species	Prunus avium
Stock Haplotype	[view all 518]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Summit	3 8
Lambert	3 4
Regina	2 5
Ambrunes	2 5
Lapins	3
Stella	3
Sweetheart	3 6
Van	3 6
Schneiders	2
Bing	3 6
Rainier	3 6
5.18.25-001	2 6
5.3.1-001	2 3
5.3.1-002	2
Benton	2 3
Brooks	2 3
Cashmere	2 3
Chelan	3 5
Chinook	3 6
Cowiche	2 3
Gil Peck	3 6
Glacier	2 3
Kiona	2
Mildew Immune Mazzard #17	2
Mildew Immune Mazzard #23	2
Newstar	3 6
NY 54	5
PMR-1	4 5
Sato Nashiki	2
Schmidt	3 4
Selah	3 6
Tieton	2 3
Ulster	3 6
Vic	3
Windsor	2 9
23_1_47	2 5
23_2_46	2 5
23_3_24	3 5
23_3_28	3 5
23_3_40	2 5
23_5_17	2 5
23_8_24	3 5
23_8_45	3 5
4.10.19-001	2 3
4.10.19-002	2 3
4.10.19-003	2 3
4.10.19-004	3
4.10.19-005	2 3
4.10.19-006	2 3
4.10.19-008	3
4.10.19-009	2 3
4.10.19-010	2 3
4.10.19-011	3
4.10.2-001	2 3
4.10.2-002	2 3
4.10.2-004	3 5
4.10.2-005	2 3
4.10.2-006	2 3
4.10.2-008	3
4.10.2-009	3 5
4.10.2-010	2 3
4.10.5-001	3
4.10.5-002	3
4.10.5-003	3 5
4.10.5-004	3
4.10.5-005	3
4.10.5-006	3
4.10.5-015	3
4.10.5-016	3 5
4.10.5-018	3 5
4.10.5-019	3
4.10.5-020	3
4.10.5-028	3 5
4.10.5-029	3
4.10.5-030	3 6
4.16.2-001	2 6
4.18.15-001	2 3
4.18.15-002	3 5
4.18.15-003	3 5
4.18.15-004	3 5
4.18.15-005	3 5
4.18.15-006	2 3
4.18.15-007	3 6
4.18.15-009	3 5
4.18.15-011	3 5
4.18.15-012	3 5
4.18.15-013	3 5
4.18.15-014	2 3
4.18.15-015	3 5
4.18.15-016	2 3
4.18.15-028	3 5
4.18.15-030	2 3
4.18.15-039	3 5
4.18.15-040	3 5
4.18.15-043	2 3
4.18.2-005	3 5
4.18.2-007	2 3
4.18.2-008	2 3
4.18.2-010	2 3
4.18.2-015	2 3
4.18.2-016	3 5
4.18.2-018	3 5
4.18.2-019	2 3
4.18.2-020	3 5
4.18.2-024	3 5
4.18.2-027	2 3
4.18.2-028	2 3
5.12.5-005	2 3
5.12.5-007	2 3
5.12.5-008	2 5
5.12.5-009	2 5
5.12.5-010	2 5
5.12.5-011	2 5
5.12.5-019	2 6
5.12.5-020	2 3
5.12.5-021	2 5
5.12.5-022	2 3
5.14.15-003	5 6
5.14.15-004	2 3
5.14.15-005	5 6
5.14.15-006	5 6
5.14.15-007	5 6
5.14.15-013	5 6
5.14.15-014	3 5
5.14.15-015	5 6
5.14.15-016	5 6
5.14.15-017	3 5
5.14.15-018	5 6
5.14.15-019	5 6
5.14.15-020	2 6
5.14.23-003	3 6
5.14.23-004	3
5.14.23-006	2 3
5.23.15-001	2 3
5.23.15-002	2
5.23.2-001	3 5
5.23.2-002	3 5
5.23.2-003	2 3
5.28.15-001	2
5.28.15-002	2 3
5.28.15-003	2 3
5.28.15-004	2 3
5.28.15-005	2 3
5.28.15-006	2 3
5.28.15-007	2 5
5.28.15-008	3 5
5.28.15-009	2 5
5.28.15-010	2
5.28.15-011	2
5.28.15-012	2 3
5.28.15-013	2 3
5.28.37-001	3 8
5.28.37-002	2 3
5.28.37-003	3 8
5.28.37-004	2 3
5.28.37-005	3
5.28.37-008	2 3
5.28.37-009	3 8
5.28.37-010	3
5.28.37-011	3
5.28.37-012	2 3
5.4.15-004	5 6
5.4.15-005	2 6
6.14.2-006	5 6
6.14.2-007	2 6
6.14.2-008	3 5
6.14.2-009	4 6
6.14.2-010	2 3
6.14.2-011	2 3
6.14.2-012	3 5
6.14.2-013	2 3
6.14.2-015	2
6.29.49-001	2 3
6.29.49-002	2 5
6.29.49-003	2 3
6.29.49-005	2 5
6.29.49-007	2 5
6.29.49-008	2 3
6.30.49-009	2 6
6.30.49-011	2 5
6.30.49-012	2 5
6.30.49-013	2 6
6.30.49-014	2 5
6.30.49-015	2 5
6.30.49-016	2 5
6.30.49-017	2 5
6.31.49-003	2 3
6.31.49-004	2 5
6.31.49-005	2 3
6.31.49-006	2 3
6.31.49-007	2 3
6.31.49-009	2 3
6.31.49-010	2 5
6.31.49-011	2 3
6.31.49-012	2 5
6.31.49-013	2 3
6.31.49-014	2 3
6.31.49-015	2 3
6.32.49-032	2 3
6.32.49-033	2 3
6.32.49-034	2 3
6.32.49-035	2 3
6.32.49-037	2 3
6.32.49-038	2 3
6.32.49-039	2 5
6.32.49-040	2 5
6.32.49-041	2 3
6.33.49-001	2 4
6.33.49-002	2 4
6.33.49-003	2 3
6.33.49-004	2 4
23-01-11	2 5
23-02-34	2 5
23-03-13	3 5
23-03-23	3 5
23-03-48	2 5
23-03-56	3 5
23-06-04	2 5
23-06-23	2 5
23-07-26	3 5
23-08-55	3 5
Dzherlo	2 4
Olympus	3 4
PC 7146-16	2 3
Kordia	2
Cristobalina	2
Vittoria	2 5
FR20T047	2 5
FR13T004	3
FR13T071	3 6
FR31T121	2 3
FR32T087	2 6
FR32T088	2 6
FR32T093	2 6
FR20T045	3 5
FR26T117	3 6
FR29T115	2 3
PC 9816-005	4
PC 9816-023	3 5
PC 9816-041	6
PC 9816-059	6
PC 9816-083	5 6
PC 9816-103	3
PC 9816-105	3 4
PC 9816-106	3 5
PC 9816-112	5 6
PC 9816-078	4 6
PC 9819-005	5
PC 9819-031	3
PC 9819-038	3 4
PC 9814-025	3
PC 9814-078	3 4
PC 9814-103	5 6
PC 9814-105	3 5
PC 9814-026	3 4
PC 9814-028	3 4
PC 9814-055	3 4
PC 9814-062	5 6
PC 9814-063	4
PC 9814-068	3 5
PC 9814-071	5
PC 9814-076	6
PC 9819-034	5
PC 9816-042	11
Emperor Francis	2 3
Black Republican	3 6
Krupnoplodnaya	2
Early Burlat	2
Venus	2
Moreau	2 5
Index	3
Sunburst	3 4
6.14.6-008	5 6
FR02T062	2 3
FR02T063	2 3
5.14.23.001	3 6
6.16.44-005	3 6
6.23.44-001	2 3
6.23.44-002	3
6.23.55-006	2 3
6.23.55-010	2 3
6.23.6-002	2 3
6.23.6-003	3
6.16.44-001	2 6
6.16.44-002	2 3
6.16.44-003	2 3
6.28.44-001	2 3
6.28.44-002	2 3
6.4.44-003	2 3
6.4.44-004	2 6
6.4.44-006	2 6
6.4.44-007	2 6
6.4.44-009	2 6
6.4.44-010	2 6
6.4.45-001	2 3
4.3.1-004	2 6
4.3.1-009	2 6
5.3.1-008	2 6
5.3.1-010	2 3
5.3.1-015	2 3
5.3.1-016	2 3
5.3.1-017	2 3
6.30.50-002	3 6
6.14.6-003	3 6
6.28.45-001	3 5
FR09T089	2 5
6.12.45-001	2
6.12.45-002	2
6.12.45-003	2
6.12.45-004	2
6.12.45-005	2
6.12.45-007	2
6.12.45-008	2
6.12.45-009	2
6.12.45-010	2
6.14.45-001	2 6
6.14.45-003	2
6.14.45-004	2
6.14.45-005	2 3
6.14.45-006	2 3
6.14.45-007	2
6.14.45-008	2 3
6.14.45-009	2 3
6.28.45-002	2
6.14.6-001	2 3
6.14.6-002	4 6
6.14.6-004	2 3
6.14.6-005	3 4
6.14.6-006	3 4
6.14.6-007	3 4
6.14.6-010	2 3
6.23.6-004	2
6.23.6-005	2
6.23.6-007	2
6.23.6-008	2
6.23.6-012	2
6.28.44-005	3 4
6.28.55-006	2 5
6.28.55-007	3 5
6.23.6-001	3 4
6.23.6-006	3
6.23.6-009	2 6
6.4.44-001	2 6
6.4.6-001	10 3
FR04T029	6 8
FR08T074	3 4
6.28.55-002	3
FR01T050	2 3
5.10.25-001	2 3
5.10.25-002	2 3
5.16.25-002	2 6
5.16.25-003	2 6
5.16.25-004	2 6
5.16.25-005	2 6
5.16.25-009	2 6
5.16.25-010	2 3
5.16.25-013	2 3
5.18.25-005	2 3
4.3.1-008	2 3
5.3.1-005	2 3
FR09T037	3
6.29.50-001	2 3
6.29.50-002	2 5
6.29.50-003	2 5
6.29.50-004	2 5
6.29.50-005	2 3
6.29.50-007	2 5
6.29.50-008	2 5
6.30.50-004	2 5
6.30.50-005	2 6
6.31.50-001	2 5
6.31.50-002	2 3
6.31.50-003	2 3
6.31.50-004	2 5
6.31.50-005	2 3
6.32.50-001	2 5
6.32.50-002	2 5
6.32.50-003	2 5
6.32.50-004	2 3
6.32.50-005	2 3
6.32.50-006	2 5
6.32.50-007	2 3
6.32.50-008	2 3
6.33.50-001	2 3
5.10.26-001	2 3
5.10.26-002	3 5
5.10.26-003	3 5
5.10.26-004	3 5
5.10.26-005	3 5
5.10.26-007	3 5
5.10.26-008	2 3
5.13.26-001	4 5
5.13.26-002	4 5
5.13.26-003	5
5.13.26-004	2 4
5.13.26-005	2 4
5.13.26-006	2 4
5.13.26-007	2 5
5.13.26-009	5
5.14.26-001	5 6
5.14.26-002	2 6
5.14.26-003	2 3
5.16.26-001	2 6
5.16.26-002	2 3
5.16.26-003	5
5.16.40-001	2 6
5.18.26-001	2 6
5.18.26-002	5
FR06T097	5 6
FR07T026	5 6
6.28.44-003	3 6
AA	5 6
PC 9816-069	3 5
PC 9816-079	5 6
PC 9816-096	4 6
PC 9816-104	3 5
PC 9816-114	3 5
PC 9817-097	3 4
4.18.15-010	2 3
4.18.15-042	2 3
4.18.15-047	2 3
4.18.15-048	2 3
4.3.1-003	2 5
4.3.1-005	2 5
4.3.1-006	2
4.3.1-007	2
5.3.1-009	2 5
5.3.1-011	2
5.3.1-012	2
5.3.1-013	2 5
5.3.1-014	2
5.4.15-001	5 6
5.4.15-002	5 6
5.4.15-003	5 6
FR01T070	2 3
FR49T083	2 6
5.16.17-003	3 6
5.16.25-006	3 6
5.16.25-008	3 6
5.16.25-012	3 6
5.20.6-001	3 6
6.16.44-008	6
6.4.45-003	3 6
6.4.6-004	6
6.4.6-006	6
6.4.6-007	3
6.4.6-008	2 6
6.4.6-009	2 6
5.16.17-001	3 4
5.16.17-004	3 6
6.14.17-001	4 6
6.14.17-002	3 6
6.14.17-003	4 6
6.14.17-004	3 4
6.14.17-005	3 4
FR02T024	4 6
4.14.17-001	3 6
5.13.26-008	2 5
6.28.44-004	2
4.3.1-001	2 3
5.3.1-007	2 3
5.3.1-018	2 3
5.10.40-001	2 3
5.10.40-002	2 3
5.10.40-003	2 3
5.10.40-004	2 3
5.10.40-005	2 3
5.10.40-007	2 3
5.10.40-008	2 3
5.10.40-009	2 3
5.10.40-010	2 3
5.10.40-011	2 3
5.10.40-012	2 3
5.10.40-013	2 3
5.10.40-014	2 3
5.10.40-015	2 3
5.10.40-016	2 3
5.10.40-017	2 3
5.13.40-002	2
5.13.40-003	2 4
5.13.40-004	2 4
5.16.40-003	2 3
5.16.40-004	2 3
6.30.50-001	2 6
6.30.50-003	2 5
6.10.55-001	3 5
6.10.55-002	3 5
6.10.55-003	2 3
6.10.55-004	2 3
6.10.55-005	2 3
6.10.55-006	2 3
6.10.55-007	2 3
6.10.55-008	3 5
6.10.55-009	2 3
6.10.55-010	2 3
6.16.55-001	2 6
6.16.55-002	5 6
6.23.17-001	2 5
6.23.55-002	2 5
6.23.55-005	2 3
6.23.55-007	2
6.23.55-008	2 3
6.28.55-001	2 5
6.28.55-003	3 5
6.28.55-004	2 5
6.28.55-005	2 5
5.13.40-001	3
5.16.25-001	6
5.18.25-004	3
5.3.1-006	2 4
6.16.44-004	3 6
6.16.44-006	2 3
6.16.44-007	2 3
6.16.44-009	3 6
6.23.17-003	3
6.23.17-004	2
Bertiolle	2
Napoleon	2 3

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Pav-HB-05-1	Sweet Cherry-RosBREED-1.6K-2019	5	0	3.79

Projects


Project Name
RosBREED_Sweet_Cherry_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17
RosBREED_snp_sweet_cherry_Pp5_00241334	B	B	A	B	B	B	B	B	A	B	A	B	B	A	B	B
RosBREED_snp_sweet_cherry_Pp5_00318184	A	A	A	B	A	A	A	B	B	B	B	A	-	A	B	A
RosBREED_snp_sweet_cherry_Pp5_00335413	B	B	B	A	B	B	B	A	A	A	-	-	-	B	A	B
RosBREED_snp_sweet_cherry_Pp5_02722408	B	B	B	B	A	-	A	A	B	B	B	B	B	B	-	-
RosBREED_snp_sweet_cherry_Pp5_03193567	A	B	B	B	A	-	B	B	B	A	B	A	A	A	B	A
RosCOS1004-260_snp_sweet_cherry_Pp5_00332450	B	B	B	A	B	B	B	A	A	A	A	B	B	B	A	B

Alignments

Feature Name	Type	Location	Analysis
Pp05	chromosome	Pp05:241337..3193818.	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)