Mdo-HB-12-19

Haplotype Block Overview
Name Mdo-HB-12-19
Species Malus x domestica
Stock Haplotype [view all 431]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 3
Rome Beauty Law 3
Jonafree 3
Redfree 22 28
Spartan 3
Wagener 3 7
Worcester Pearmain 3
Tsugaru 3 4
Golden Delicious 3 4
Fuji 3 7
Empire 3
Gala 3
Honeycrisp 3
Elstar 3 5
Marshall McIntosh 3
Cripps Pink 4 7
Granny Smith 3 7
Jonathan 3
Ralls Janet 3
Delicious 3 7
Discovery 3 7
Prima 3
821 7
Fiesta 3 7
Ingrid Marie 3 5
Idared 3 7
Esopus Spitzenburg 3
Braeburn 3
Sansa 3
Lodi 4 7
James Grieve 3 5
Cripps Red 4 7
Burgundy 3
Akane 3
Ambrosia 3
Aurora Golden Gala 3 7
Beacon 3
Ben Davis 3 4
Cameo 3
Chinook 3 4
Clivia 3
Co-op 17 3
Co-op 18 3
Dayton 3 5
Delblush 3 4
Delorgue 3 5
Dolgo 10
Geheimrat Dr. Oldenburg 3
Duchess of Oldenburg 3 5
Early Cortland 3 7
Empress 3 7
F2 26829-2-2 3
Fantazja 3
Fireside 3
Fortune 3 7
Frostbite 3 5
Ginger Gold 3 7
GMAL 4327 3 7
GMAL 4328 3 7
GMAL 4329 7
GMAL 4332 3 7
Goodland 3
Haralson 3 5
Honeygold 3
Hudson 3
Jersey Black 2 7
Jonamac 3
Keepsake 3 5
Kerr 10 3
Lady Williams 3 7
Liberty 3 7
Linda 3
Liveland Raspberry 16 3
Longfield 7
Macoun 3 7
Malinda 3
Mantet 3
Melba 16 3
Melrose 3 7
MN 1627 3
MN 1628 3
MN 1691 3
MN 1706 22 23
MN 1708 3 5
MN 1760 3 5
MN 1764 5
MN 1789 3
MN 1802 3 5
MN 1836 3
MN 1837 3
MN 1839 3
MN 1888 3
MN 1899 3
MN 1940 3 7
MN 2016 3
AA-44 3 7
Monroe 3
Montgomery 3 4
Nicola 3 4
NJ 31 3
NJ 53 5 7
Oriole 3
PRI 14-126 3 4
PRI 14-510 3 4
PRI 1661-2 3 4
PRI 54-12 3
PRI 855-102 3
Primula 3 4
Raritan 22 28
Regent 3
Russian Seedling 7
Sawa 3 4
Sciros 3 4
Sharon 3 7
Silken 3
Wildung 3
Splendour 4 7
State Fair 3 5
NJ 55 3
Co-op 29 3 4
Sunrise 3
Sweet Sixteen 3 5
Topaz 3
Vista Bella 7
Wealthy 3 5
Winesap 3
Winter Banana 4 7
Yellow Newtown 3
Yellow Transparent 7
0407-0001 3
0407-0005 3 7
0407-0006 7
0407-0007 3 7
0407-0008 3
0408-0003 4 7
0408-0004 3
0408-0005 3
0408-0007 3
0408-0008 3 4
0408-0010 3 7
0408-0011 3 4
0408-0014 3 7
0408-0015 4 7
0409-0022 3
0409-0024 3 7
0409-0028 3
0409-0030 3
0409-0032 3
0409-0035 3
0409-0036 3
0409-0038 3
0409-0039 3
0409-0040 3 7
0409-0043 3 7
0409-0045 3
0410-0002 7
0410-0003 7
0410-0005 3
0410-0006 3 7
0410-0010 3 7
0410-0011 3 7
0410-0012 7
0410-0013 3 7
0410-0015 3
0410-0017 3 7
0410-0018 3 7
0414-0010 3 7
0414-0015 3 7
0414-0017 3 7
0414-0018 3 4
0414-0019 3 7
0414-0020 3
0414-0021 3
0415-0001 3 4
0415-0004 3 4
0415-0005 3 4
0415-0011 3 4
0415-0012 3
0415-0013 3 4
0415-0014 3
0415-0016 3 4
0415-0017 3
0415-0019 3
0415-0020 3
0415-0025 3
AE_HCxJonf-145 3
AE_HCXJonf-148 3
AE_HCxJonf-157 3
AE_HCXJonf-162 3
AE_HCXJonf-168 3
AE_HCxJonf-175 3
AE_HCxJonf-183 3
AE_HCxJonf-185 3
AE0118-237 3
AE0118-238 3
AE0118-239 3
AE0118-240 3
AE0118-243 3
AE0118-244 3
AE0118-245 3
AE0118-246 3
AE0118-249 3
AE0206-159 3 7
AE0206-160 3 7
AE0206-161 3
AE0206-162 5 7
AE0206-163 5 7
AE0206-164 3
AE0206-165 3 7
AE0206-167 3 5
AE0206-168 3 5
AE0206-169 3 7
AE0206-170 3 5
AE0210-146 3 7
AE0210-147 3 7
AE0210-149 3 7
AE0210-150 3 7
AE0210-151 3 7
AE0210-152 3 5
AE0210-153 3 7
AE0210-154 3 7
AE0210-157 3 7
AE0210-158 3 7
AE0210-159 3 7
AE0210-162 3 7
AE0210-163 3 7
AE0210-164 3 7
AE0210-165 3 7
AE0210-166 3 7
AE0210-168 3 7
AE0210-169 3 7
AE0210-170 3 7
AE0210-171 3 7
AE0210-172 3 7
AE0210-173 3 7
AE0210-174 3 7
AE0213-175 3
AE0213-176 3 7
AE0213-177 7
AE0213-178 3 7
AE0213-179 7
AE0213-180 3 7
AE0213-181 7
AE0213-182 3 7
AE0213-183 3 7
AE0213-186 3
AE0213-187 3 7
AE0213-190 3 7
AE0213-193 7
AE0213-194 7
AE0213-195 3
AE0213-196 7
AE0213-197 3 7
AE0213-198 7
AE0213-199 3 7
AE0213-200 3 7
AE0213-201 3 7
AE0213-202 7
AE0213-205 3 7
AE0213-206 3 7
AE0251-323 3 7
AE0251-325 3
AE0251-327 3 7
AE0251-329 3 7
AE0251-330 3 7
AE0251-331 5 7
AE0251-342 3
AE0251-343 3 7
AE0406-239 3
AE0406-254 3
AE0406-258 3
AE0406-259 3
AE0406-263 3
AE0406-264 3
AE0406-266 3
AE0406-271 3
AE0406-274 3
AE0406-278 3
AE0406-281 3
AE0406-286 3
AE0406-288 3
AE0406-289 3
AE0406-294 3
AE0406-298 3
Minneiska 3
NJ 303955 3
PRI 612-1 4 7
Arlet 3 7
Co-op 39 27 28
Pinova 3
Scired 3 4
Scifresh 3
0409-0025 3 7
0409-0026 3 7
0409-0027 3 7
0409-0031 3 7
0409-0033 3 7
0409-0047 3 7
G-14-050 3 7
G-14-052 3 7
G-14-054 3
G-14-055 3
G-14-056 3
G-14-057 3
G-14-059 3 7
G-14-060 3
G-14-061 3 7
G-14-062 3 7
G-14-064 3
G-14-065 3 7
G-14-069 3 7
G-14-067 3 7
G-14-068 3
G-14-071 3 7
G-14-073 3
G-14-074 3 7
G-14-075 3
G-14-076 3 7
G-14-077 3
G-14-078 3 7
G-14-080 3 7
G-09-232 3 7
G-09-233 3 7
G-09-234 3 7
G-09-235 3 7
G-09-236 3 7
G-09-237 3
G-09-238 3 7
G-09-239 3 7
G-09-240 3
G-09-241 3
G-09-242 3
G-09-243 3 7
G-09-245 3
G-09-246 3 7
G-09-258 3
G-09-259 3
G-09-260 3 7
G-09-261 3 7
G-09-262 3 7
G-09-263 3 7
G-09-264 3
G-09-265 3
G-09-266 3 7
G-09-267 3
G-09-268 3
0408-0021 3 7
Wijcik McIntosh 3
Beauty of Bath 25 7
Priam 3 4
Northern Spy 3
Co-op 15 3 4
MN 1702 3 5
WA 2 3 4
WA 5 4
Pitmaston Pineapple 3
0411-0011 3
0411-0017 3 4
0411-0023 3 4
AE0250-086 3 5
AE0250-087 5 7
AE0250-089 5 7
AE0250-090 3 7
AE0250-092 5 7
AE0250-093 5 7
AE0250-094 5 7
AE0250-095 3 7
Sonya 3
Co-op 38 3
AE0250-096 3 5
AE0250-327 3
Co-op 30 3 4
Jonagrimes 3 5
AE0211-036 7
G-07-039 28 3
PRI 14-152 3
PRI 47-176 3
G-07-041 3 7
BC-8S-27-43 3 7
AE0250-091 3
AE0250-097 3
AE0250-325 3 7
AE0250-326 3 7
AE0250-329 3
AE0250-333 3 7
AE0250-334 3 7
AE0250-335 3 7
AE0250-336 3
AE0250-338 3
AE0250-341 3 7
AE0211-038 3 7
AE0211-043 7
AE0211-045 7
AE0211-051 3 7
G-07-010 3 7
G-07-014 3
G-07-015 3
G-07-019 3
G-07-020 3
G-07-024 3
G-07-032 3 7
G-07-033 3
G-07-034 3
G-07-035 3
G-07-044 3
AE0211-053 3 7
AE0211-054 3 5
AE0250-088 3
AE0250-324 3
AE0250-328 3
AE0250-331 3
AE0250-332 3
AE0250-337 3 5
AE0250-339 3 5
Minnewashta 3 5
Autumn Crisp 3
G-14-066 3
Lu1-11-010 3
Lu1-11-013 3 7
Lu1-11-016 3 7
Lu1-11-017 3 7
Lu1-11-018 3
NJ 90 3
Lord Lambourne 3 5
Antonovka GH 5
Grimes Golden 3
Kidds Orange Red 3
Malus baccata Hansen #2 7
Malus baccata Jackii 10
Summerred 3
William's Pride 3 7
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-12-19Apple-RosBREED-3.9K-20191224.6224.62
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 2345678910111213141516171819202122232425262728
GDsnp01501AABAAAAAAAB--AAAA---AAB--AA
RosBREEDSNP_SNP_AG_16327621_Lg12_01501_MAF10_571719_exon1-AAB-AAAAAAAA--B-B--AB-AABA
RosBREEDSNP_SNP_AG_16343119_Lg12_01501_MAF30_MDP0000263610_exon2AAAB-B--BA-BA-B-BBABABAABAB
RosBREEDSNP_SNP_TC_16355366_Lg12_01501_MAF30_384844_exon1AAAB-BBA--ABAABB-BABBAA--BA
Alignments
Feature NameTypeLocationAnalysis
Chr12 chromosome Chr12:16049360..16072735. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation