Mdo-HB-09-38

Haplotype Block Overview

Name	Mdo-HB-09-38
Species	Malus x domestica
Stock Haplotype	[view all 432]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Cox's Orange Pippin	10 11
Rome Beauty Law	11 15
Jonafree	11 18
Redfree	29 76
Spartan	11 7
Wagener	11 7
Worcester Pearmain	11
Tsugaru	11 4
Golden Delicious	4 5
Fuji	11 7
Empire	11
Gala	11 4
Honeycrisp	10 7
Elstar	11 4
Marshall McIntosh	11
Cripps Pink	11 5
Granny Smith	10 14
Jonathan	11
Ralls Janet	11 13
Delicious	11 7
Discovery	11 4
Prima	14 18
821	16
Fiesta	10 11
Ingrid Marie	11
Idared	11 7
Esopus Spitzenburg	11 4
Braeburn	11 14
Sansa	11
Lodi	11 15
James Grieve	11 5
Cripps Red	11 5
Burgundy	11
Akane	11
Ambrosia	11 4
Aurora Golden Gala	4
Beacon	6 7
Ben Davis	12 18 4 7
Cameo	11 5
Clivia	11 14
Co-op 17	21 4
Co-op 18	29 69
Dayton	11 14
Delblush	12 4
Delcorf	4
Delorgue	11 4
Dolgo	19 54
Geheimrat Dr. Oldenburg	14 37
Duchess of Oldenburg	6 7
Early Cortland	11 7
Empress	11
F2 26829-2-2	16 18
Fantazja	11
Fireside	11
Fortune	10 4
Frostbite	10 6
Ginger Gold	11 4
GMAL 4327	29 4
GMAL 4328	11 7
GMAL 4329	39
GMAL 4332	4 7
Goodland	14 7
Haralson	6 7
Honeygold	5 7
Hudson	11
Jersey Black	11 24
Jonamac	11
Keepsake	10 11
Kerr	54 7
Lady Williams	10 11
Liberty	11
Linda	11 6
Liveland Raspberry	11 58
Longfield	29 79
Macoun	11
Malinda	11 7
Mantet	37
Melba	11 58
Melrose	11 7
MN 1627	5 7
MN 1628	11 6
MN 1691	11 14
MN 1706	59 60
MN 1708	10 7
MN 1760	6
MN 1764	6
MN 1789	14 5
MN 1802	11 6
MN 1836	10 37
MN 1837	11 7
MN 1839	6 7
MN 1888	11 5
MN 1899	11 6
MN 1940	11 37
MN 2016	14 7
AA-44	14 6
Monroe	11
Montgomery	11
Nicola	11
NJ 31	11
NJ 53	11
Oriole	11
PRI 14-126	18 5
PRI 14-510	18 4
PRI 16-144	18
PRI 1661-2	11
PRI 54-12	11 18
PRI 855-102	18
Primula	11 58
Raritan	11
Regent	11 6
Russian Seedling	29
Sawa	11
Sciros	11 4
Sharon	11 6
Silken	4 7
Wildung	11
Splendour	11 4
State Fair	37 7
NJ 55	5 7
Co-op 29	4 5
Sunrise	11 4
Sweet Sixteen	11 6
Topaz	11 4
Vista Bella	11
Wealthy	11 6
Winesap	11 12
Winter Banana	4
Yellow Newtown	29 77
Yellow Transparent	15 7
0407-0001	4 7
0407-0005	4 7
0407-0006	4 7
0407-0007	4 7
0407-0008	4 5
0408-0003	11 4
0408-0004	11 4
0408-0005	11 4
0408-0007	10 4
0408-0008	10 4
0408-0010	11 4
0408-0011	10 4
0408-0014	11 4
0408-0015	11 4
0409-0022	10 4
0409-0024	10 4
0409-0028	10 4
0409-0030	4 7
0409-0032	10 4
0409-0035	10 4
0409-0036	10 4
0409-0038	10 4
0409-0039	10 4
0409-0040	10 4
0409-0043	4 7
0409-0045	4 7
0410-0002	10 4
0410-0003	10 4
0410-0005	14 4
0410-0006	14 4
0410-0010	10 4
0410-0011	14 4
0410-0012	10 4
0410-0013	10 4
0410-0015	14 4
0410-0017	14 4
0410-0018	10 4
0414-0010	10 5
0414-0015	10 7
0414-0017	7
0414-0018	10 7
0414-0019	10 7
0414-0020	10 7
0414-0021	5 7
0415-0001	10 11
0415-0004	11 7
0415-0005	11 7
0415-0011	10
0415-0012	11 7
0415-0013	10 7
0415-0014	10
0415-0016	11 7
0415-0017	10
0415-0019	10 7
0415-0020	11 7
0415-0025	10
AE_HCxJonf-145	11 7
AE_HCXJonf-148	10 11
AE_HCxJonf-157	10 11
AE_HCXJonf-162	10 18
AE_HCXJonf-168	10 5
AE_HCxJonf-175	11 7
AE_HCxJonf-183	18 7
AE_HCxJonf-185	11 7
AE0118-237	6 7
AE0118-238	10 6
AE0118-239	6 7
AE0118-240	6 7
AE0118-243	10 6
AE0118-244	6 7
AE0118-245	6 7
AE0118-246	6 7
AE0118-249	10 11
AE0206-159	37 4
AE0206-160	37 4
AE0206-161	37 4
AE0206-162	11 37
AE0206-163	11 37
AE0206-164	11 14
AE0206-165	14 4
AE0206-167	11 14
AE0206-168	11 14
AE0206-169	14 4
AE0206-170	11 37
AE0210-146	39 4
AE0210-147	39 4
AE0210-149	11 39
AE0210-150	39 4
AE0210-151	39 4
AE0210-152	11 37
AE0210-153	11 39
AE0210-154	39 4
AE0210-157	11 39
AE0210-158	39 4
AE0210-159	11 39
AE0210-162	39 4
AE0210-163	11 39
AE0210-164	39 4
AE0210-165	11 39
AE0210-166	11 39
AE0210-168	39 4
AE0210-169	39 4
AE0210-170	39 4
AE0210-171	11 39
AE0210-172	39 4
AE0210-173	11 39
AE0210-174	11 39
AE0213-175	4 7
AE0213-176	11 4
AE0213-177	4
AE0213-178	11 7
AE0213-179	11 4
AE0213-180	4 7
AE0213-181	4
AE0213-182	11 4
AE0213-183	4
AE0213-186	11 7
AE0213-187	4 7
AE0213-190	11 7
AE0213-193	4 7
AE0213-194	4 7
AE0213-195	11 7
AE0213-196	4
AE0213-197	4
AE0213-198	29 4
AE0213-199	11 4
AE0213-200	11 4
AE0213-201	11 4
AE0213-202	4
AE0213-205	11 7
AE0213-206	4
AE0251-323	4 6
AE0251-325	11 6
AE0251-327	11 4
AE0251-329	11 4
AE0251-330	4 6
AE0251-331	11
AE0251-342	11 6
AE0251-343	4 6
AE0406-239	4 7
AE0406-254	10 4
AE0406-258	10 4
AE0406-259	10 4
AE0406-263	4 7
AE0406-264	7
AE0406-266	7
AE0406-271	10 7
AE0406-274	7
AE0406-278	10 4
AE0406-281	4 7
AE0406-286	10 7
AE0406-288	7
AE0406-289	10 4
AE0406-294	10 7
AE0406-298	10 7
Minneiska	37 7
NJ 303955	7
PRI 612-1	11 18
Arlet	5 7
Co-op 39	11
Pinova	11 5
Scired	11
Scifresh	11 4
0409-0025	4 7
0409-0026	10 4
0409-0027	10 4
0409-0031	10 4
0409-0033	10 4
0409-0047	10 4
G-14-050	11 7
G-14-052	11 7
G-14-054	11 5
G-14-055	11 5
G-14-056	11 7
G-14-057	11 7
G-14-059	11 7
G-14-060	5 7
G-14-061	11 7
G-14-062	5 7
G-14-064	11 5
G-14-065	5 7
G-14-069	11 7
G-14-067	5 7
G-14-068	5 7
G-14-071	5
G-14-073	11 5
G-14-074	5
G-14-075	5 7
G-14-076	11 7
G-14-077	11 5
G-14-078	5
G-14-080	11 7
G-09-232	14 4
G-09-233	11 4
G-09-234	11
G-09-235	11 14
G-09-236	11 4
G-09-237	11 14
G-09-238	14 4
G-09-239	11 14
G-09-240	11 4
G-09-241	14 4
G-09-242	11 14
G-09-243	11
G-09-245	11 4
G-09-246	14 4
G-09-258	11 14
G-09-259	11 14
G-09-260	14 4
G-09-261	11
G-09-262	11
G-09-263	11 14
G-09-264	11
G-09-265	11
G-09-266	11 14
G-09-267	11 4
G-09-268	14 4
0408-0021	11 4
Wijcik McIntosh	11
Beauty of Bath	4 68
Priam	11 18
Northern Spy	11 7
Co-op 15	11 18
MN 1702	11 6
WA 2	11 4
WA 5	11 4
Pitmaston Pineapple	15 7
0411-0011	10 5
0411-0017	11 5
0411-0023	11 5
AE0250-086	11 4
AE0250-087	11 6
AE0250-089	11 6
AE0250-090	11 6
AE0250-092	4 6
AE0250-093	11
AE0250-094	4 6
AE0250-095	11
Sonya	11 14
Co-op 38	21 4
AE0250-096	11
AE0250-327	11
Co-op 30	10 11
Jonagrimes	3 6
AE0211-036	11 15
G-07-039	11
PRI 14-152	16 5
PRI 47-176	11 18
G-07-041	11 7
BC-8S-27-43	11 4
AE0250-091	29 7
AE0250-097	10 4
AE0250-325	10 4
AE0250-326	10 4
AE0250-329	10 4
AE0250-333	10 29
AE0250-334	10 29
AE0250-335	29 7
AE0250-336	10 4
AE0250-338	10 29
AE0250-341	10 4
AE0211-038	4 7
AE0211-043	11
AE0211-045	11 7
AE0211-051	4 7
G-07-010	10 11
G-07-014	10 11
G-07-015	10 11
G-07-019	11 14
G-07-020	11 14
G-07-024	11 14
G-07-032	10 11
G-07-033	11 14
G-07-034	10 11
G-07-035	10 11
G-07-044	10 11
AE0211-053	37 4
AE0211-054	37 4
AE0250-088	10 37
AE0250-324	14 7
AE0250-328	14 7
AE0250-331	10 37
AE0250-332	37 7
AE0250-337	37 7
AE0250-339	14 7
Minnewashta	14 37
Autumn Crisp	11 5
G-14-066	5 7
Lu1-11-010	7
Lu1-11-013	7
Lu1-11-016	11
Lu1-11-017	11 7
Lu1-11-018	11 7
NJ 90	11 15
Lord Lambourne	11
Antonovka GH	6 78
Grimes Golden	3 4
Kidds Orange Red	11
Malus baccata Hansen #2	29 80
Malus baccata Jackii	16 81
Summerred	11
William's Pride	11

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Mdo-HB-09-38	Apple-RosBREED-3.9K-2019	9	51.79	53.6

Projects


Project Name
RosBREED_Apple_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83
GDsnp00860	A	B	A	B	B	B	B	B	B	B	B	B	B	A	B	-	B	A	B	A	B	B	B	B	B	B	A	B	-	-	-	-	B	B	-	B	-	-	-	B	B	B	-	B	B	B	-	B	B	-	-	B	B	B	-	-	B	B	B	B	B	B	A	B	B	A	B	B	A	B	A	-	B	-	B	A	A	B	B	B	A	B
GDsnp01293	B	B	B	A	B	B	B	A	B	B	B	B	B	B	B	B	B	-	-	A	B	B	B	B	B	A	A	B	B	-	-	B	B	B	B	B	-	B	B	B	B	-	B	B	B	B	-	B	B	-	-	B	B	B	-	-	B	B	B	B	A	B	-	-	B	-	-	B	B	-	B	B	A	B	B	B	B	B	B	B	-	-
RosBREEDSNP_SNP_CT_35857597_Lg9_00860_MAF30_1682680_exon3	B	B	B	B	B	B	B	B	A	B	A	A	A	B	B	B	B	-	-	B	B	B	A	B	A	B	B	B	B	B	B	B	B	B	-	A	B	B	B	B	A	B	B	A	A	B	-	-	-	-	-	B	-	-	A	B	A	A	B	A	B	B	B	B	B	B	B	B	B	B	A	-	B	-	A	B	B	A	B	B	-	-
RosBREEDSNP_SNP_CT_35934024_Lg9_00860_MAF50_MDP0000121139_exon5	-	-	B	A	B	A	-	-	B	A	B	-	B	A	B	-	B	-	-	B	-	-	-	A	B	-	A	B	A	-	-	-	A	A	-	B	-	B	A	-	B	-	-	-	B	A	-	-	-	-	-	-	A	A	-	-	-	A	B	B	-	B	-	-	-	B	A	A	-	A	A	-	A	B	A	A	B	B	A	A	B	A
RosBREEDSNP_SNP_GA_35909322_Lg9_00860_MAF30_786566_exon1	B	B	B	B	B	B	B	B	A	B	B	A	B	B	B	B	A	-	-	B	B	A	A	B	A	B	B	B	B	B	A	B	B	B	-	A	B	B	B	A	A	B	B	B	B	B	-	B	B	A	B	B	B	B	-	-	B	A	B	A	B	A	B	B	B	B	B	A	B	B	A	B	B	B	B	B	A	B	B	B	-	-
RosBREEDSNP_SNP_GA_35913773_Lg9_00860_MAF20_MDP0000132641_exon2	B	B	B	B	B	A	A	B	B	B	B	B	B	B	B	B	B	-	-	B	B	B	B	-	B	B	B	B	-	B	B	-	A	A	B	B	B	B	B	B	B	-	B	B	B	B	-	B	B	-	-	B	B	A	-	-	B	B	B	B	B	B	B	B	B	-	-	B	B	B	B	B	A	B	B	A	B	B	A	B	-	-
RosBREEDSNP_SNP_TC_35855412_Lg9_00860_MAF20_1620670_exon2	-	-	A	A	A	A	A	A	B	A	B	-	A	A	B	-	A	-	-	A	A	A	-	A	-	A	A	A	A	-	-	-	-	A	-	B	A	A	A	-	-	-	A	-	-	-	A	A	B	-	-	-	B	A	-	-	A	A	B	A	-	-	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	B	B	B	-	-
RosBREEDSNP_SNP_TG_35859865_Lg9_00860_MAF10_MDP0000233161_exon1	A	A	A	A	B	A	-	-	B	A	A	A	A	A	A	A	B	-	-	A	A	B	B	A	B	A	A	A	A	A	B	A	A	B	-	A	A	A	A	B	A	A	A	A	A	A	-	A	A	-	-	B	A	A	-	-	A	A	B	B	A	B	A	A	B	A	A	B	A	A	A	A	A	A	A	A	A	B	A	A	-	-

Alignments

Feature Name	Type	Location	Analysis
Chr09	chromosome	Chr09:29226792..30530846.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation