Mdo-HB-09-36

Haplotype Block Overview

Name	Mdo-HB-09-36
Species	Malus x domestica
Stock Haplotype	[view all 419]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Cox's Orange Pippin	2
Rome Beauty Law	2 4
Jonafree	12 4
Redfree	12 49
Spartan	4 7
Wagener	2 7
Worcester Pearmain	2
Tsugaru	2
Golden Delicious	2
Fuji	2 7
Empire	4
Gala	2 4
Honeycrisp	2 4
Elstar	2
Marshall McIntosh	2 4
Cripps Pink	2 4
Granny Smith	2 3
Jonathan	2 4
Delicious	4 7
Discovery	2
Prima	12 3
821	8 9
Fiesta	2 4
Ingrid Marie	2
Idared	4 7
Esopus Spitzenburg	2 4
Braeburn	2 7
Sansa	2 4
Lodi	2
James Grieve	2 3
Cripps Red	2 4
Akane	2
Ambrosia	2 4
Aurora Golden Gala	2
Beacon	32 33
Ben Davis	12 2 4 7
Cameo	2 4
Clivia	2 3
Co-op 17	2
Co-op 18	45 8
Dayton	2 3 4
Delblush	2 4
Delorgue	2
Geheimrat Dr. Oldenburg	3
Duchess of Oldenburg	3 4
Early Cortland	2 4 7
Empress	4
F2 26829-2-2	12 8
Fantazja	4
Fireside	2
Fortune	2 3
Frostbite	3
Ginger Gold	2
GMAL 4327	4
GMAL 4328	2 4
GMAL 4329	2 4
GMAL 4332	4 7
Goodland	3 4
Haralson	2 3
Honeygold	2
Hudson	2 4
Jonamac	4
Keepsake	2 3
Kerr	2 9
Lady Williams	2 4
Liberty	2 4
Linda	3 4
Longfield	3
Macoun	2 4
Malinda	2 4
Melba	2
Melrose	2 7
MN 1627	2 4
MN 1628	2 3
MN 1691	2 3
MN 1706	2 3
MN 1708	3 4
MN 1760	3
MN 1764	3
MN 1789	2 3
MN 1802	2 3
MN 1836	3
MN 1837	2 4
MN 1839	3 4
MN 1888	2
MN 1899	2 3
MN 1940	3 4
MN 2016	3 7
AA-44	3
Monroe	2 4
Montgomery	2
Nicola	4
NJ 31	4
NJ 53	4
Oriole	2
PRI 14-126	12 2
PRI 16-144	12 2
PRI 1661-2	4
PRI 855-102	12
Primula	12
Raritan	4
Regent	2 3
Russian Seedling	4
Sawa	12 4
Sciros	2 4
Sharon	2 3
Silken	2 4
Wildung	2
Splendour	2 4
State Fair	2 3
NJ 55	2 7
Co-op 29	2
Sunrise	2 4
Sweet Sixteen	2 3
Topaz	2 3
Vista Bella	4
Wealthy	2 3
Winesap	4
Winter Banana	2 3
Yellow Newtown	34 7
Yellow Transparent	2 4
0407-0001	2
0407-0005	2 7
0407-0006	2 7
0407-0007	2 7
0407-0008	2
0408-0003	2 4
0408-0004	2 4
0408-0005	2 4
0408-0007	2
0408-0008	2
0408-0010	2 4
0408-0011	2
0408-0014	2 4
0408-0015	2 4
0409-0022	2
0409-0024	2
0409-0028	2
0409-0030	2 4
0409-0032	2
0409-0035	2
0409-0036	2
0409-0038	2
0409-0039	2
0409-0040	2
0409-0043	2 4
0409-0045	2 4
0410-0002	2
0410-0003	2
0410-0005	2 3
0410-0006	2 3
0410-0010	2
0410-0011	2 3
0410-0012	2
0410-0013	2
0410-0015	2 3
0410-0017	2 3
0410-0018	2
0414-0010	2
0414-0015	2 7
0414-0017	4 7
0414-0018	2 4
0414-0019	2 7
0414-0020	2 4
0414-0021	2 4
0415-0001	2 4
0415-0004	4
0415-0005	4
0415-0011	2
0415-0012	4
0415-0013	2 4
0415-0014	2
0415-0016	4
0415-0017	2
0415-0019	2 4
0415-0020	4
0415-0025	2
AE_HCxJonf-145	4
AE_HCXJonf-148	2 4
AE_HCxJonf-157	2 4
AE_HCXJonf-162	12 2
AE_HCXJonf-168	2
AE_HCxJonf-175	4
AE_HCxJonf-183	12 4
AE_HCxJonf-185	12 4
AE0118-237	3 4
AE0118-238	2 3
AE0118-239	3 4
AE0118-240	3 4
AE0118-243	2 3
AE0118-244	3 4
AE0118-245	3 4
AE0118-246	3 4
AE0118-249	2
AE0206-159	2 3
AE0206-160	2 3
AE0206-161	2 3
AE0206-162	3 4
AE0206-163	3 4
AE0206-164	3 4
AE0206-165	2 3
AE0206-167	3 4
AE0206-168	3 4
AE0206-169	2 3
AE0206-170	3 4
AE0210-146	2
AE0210-147	2
AE0210-149	4
AE0210-150	2
AE0210-151	2
AE0210-152	3 4
AE0210-153	2 4
AE0210-154	2
AE0210-157	4
AE0210-158	2 4
AE0210-159	2 4
AE0210-162	2 4
AE0210-163	2 4
AE0210-164	2
AE0210-165	2 4
AE0210-166	2 4
AE0210-168	2 4
AE0210-169	2 4
AE0210-170	2
AE0210-171	4
AE0210-172	2
AE0210-173	2 4
AE0210-174	4
AE0213-175	2 7
AE0213-176	2 4
AE0213-177	2 4
AE0213-178	2 7
AE0213-179	2 4
AE0213-180	2 7
AE0213-181	2 4
AE0213-182	2 4
AE0213-183	2 4
AE0213-186	2 7
AE0213-187	2 7
AE0213-190	2 7
AE0213-193	2 7
AE0213-194	2 7
AE0213-195	2 7
AE0213-196	2 4
AE0213-197	2 4
AE0213-198	2
AE0213-199	2 4
AE0213-200	2 4
AE0213-201	2 4
AE0213-202	2 4
AE0213-205	2 7
AE0213-206	2 4
AE0251-323	2 3
AE0251-325	3 4
AE0251-327	2
AE0251-329	2
AE0251-330	2 3
AE0251-331	2 4
AE0251-342	3 4
AE0251-343	2 3
AE0406-239	4
AE0406-254	2
AE0406-258	2
AE0406-259	2
AE0406-263	4
AE0406-264	2 4
AE0406-266	2 4
AE0406-271	2
AE0406-274	2 4
AE0406-278	2 4
AE0406-281	4
AE0406-286	2
AE0406-288	2 4
AE0406-289	2 4
AE0406-294	2
AE0406-298	2
Minneiska	3 4
NJ 303955	7
PRI 612-1	12 4
Arlet	2 7
Co-op 39	46 47
Pinova	2
Scired	4
Scifresh	2 7
0409-0025	2 4
0409-0026	2
0409-0027	2
0409-0031	2
0409-0033	2
0409-0047	2
G-14-050	2 7
G-14-052	2 7
G-14-054	2
G-14-055	2
G-14-056	2 7
G-14-057	2 7
G-14-059	2 7
G-14-060	2 7
G-14-061	2 7
G-14-062	2 7
G-14-064	2 7
G-14-065	2 7
G-14-069	2 7
G-14-067	2 7
G-14-068	2 7
G-14-071	2 7
G-14-073	2
G-14-074	2
G-14-075	2 7
G-14-076	2 7
G-14-077	2
G-14-078	2
G-14-080	2 7
G-09-232	2
G-09-233	2 7
G-09-234	2 7
G-09-235	2
G-09-236	2 7
G-09-237	2
G-09-238	2
G-09-239	2
G-09-240	2 7
G-09-241	2
G-09-242	2
G-09-243	2 7
G-09-245	2 7
G-09-246	2
G-09-258	2 7
G-09-259	2
G-09-260	2
G-09-261	2 7
G-09-262	2 7
G-09-263	2
G-09-264	2 7
G-09-265	2 7
G-09-266	2
G-09-267	2 7
G-09-268	2
0408-0021	2 4
Wijcik McIntosh	46 47
Beauty of Bath	2 4
Priam	12 2
Northern Spy	2 4
Co-op 15	12 3
MN 1702	2 3
WA 2	2 4
WA 5	2 3
Pitmaston Pineapple	2 4
0411-0011	2
0411-0017	2 4
0411-0023	2 4
AE0250-086	2
AE0250-087	3 4
AE0250-089	3 4
AE0250-090	3 4
AE0250-092	2 3
AE0250-093	2 4
AE0250-094	2 3
AE0250-095	2 4
Sonya	2 4
Co-op 38	2
AE0250-096	2
AE0250-327	2
Co-op 30	2 4
AE0211-036	2
G-07-039	4
G-07-041	4 7
BC-8S-27-43	2 4
AE0250-091	4
AE0250-097	2 4
AE0250-325	2 4
AE0250-326	2 4
AE0250-329	2 4
AE0250-333	2 4
AE0250-334	2 4
AE0250-335	4
AE0250-336	2 4
AE0250-338	2 4
AE0250-341	2 4
AE0211-038	2
AE0211-043	2 4
AE0211-045	2
AE0211-051	2
G-07-010	2 4
G-07-014	2
G-07-015	3 4
G-07-019	2 3
G-07-020	2 3
G-07-024	3 4
G-07-032	2
G-07-033	3 4
G-07-034	2 4
G-07-035	2 4
G-07-044	2 4
AE0211-053	2 3
AE0211-054	2 3
AE0250-088	2 3
AE0250-324	3 4
AE0250-328	3 4
AE0250-331	2 3
AE0250-332	3 4
AE0250-337	3 4
AE0250-339	3 4
Minnewashta	3
Autumn Crisp	2
G-14-066	2 7
Lu1-11-010	7
Lu1-11-013	7
Lu1-11-016	2
Lu1-11-017	2 7
Lu1-11-018	2 7
NJ 90	2 4
Lord Lambourne	2 3
Antonovka GH	53 9
Kidds Orange Red	2 4
Malus baccata Hansen #2	4 9
Malus baccata Jackii	9
Summerred	4
William's Pride	2 4

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Mdo-HB-09-36	Apple-RosBREED-3.9K-2019	9	48.34	48.34

Projects


Project Name
RosBREED_Apple_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53
RosBREEDSNP_SNP_AG_25675248_Lg1_00087_MAF20_MDP0000250276_exon1	A	B	A	-	-	A	A	B	-	B	B	A	B	-	-	-	A	A	A	A	A	B	A	B	A	B	-	A	B	B	B	A	A	B	A	A	-	-	A	A	-	-	A	B	A	A	A	A	B	B	A	A
RosBREEDSNP_SNP_AG_35144416_Lg2_86472_MAF20_86472_exon1	A	A	B	B	A	A	A	A	-	A	A	B	A	B	A	A	-	A	B	B	-	-	-	A	B	A	A	A	A	A	B	A	B	-	B	A	-	-	-	-	A	A	A	B	B	A	B	A	A	A	A	A
RosBREEDSNP_SNP_CA_25690200_Lg1_00087_MAF30_1632262_exon3	B	A	B	-	-	B	B	B	B	B	B	B	B	B	A	B	B	B	B	B	B	B	B	B	B	A	-	B	A	A	A	B	B	A	B	B	B	A	B	B	B	B	A	B	B	B	B	A	A	B	A	B
RosBREEDSNP_SNP_CT_25741771_Lg1_00087_MAF50_MDP0000240636_exon1	B	A	A	A	B	A	A	A	-	A	A	-	-	A	A	B	B	-	-	B	-	-	A	-	A	A	-	B	A	-	A	A	B	A	A	A	-	-	B	A	B	A	A	A	A	B	A	B	B	B	A	B
RosBREEDSNP_SNP_GA_25688049_Lg1_00087_MAF30_1632262_exon1	B	A	B	-	-	B	B	B	B	A	A	B	A	B	A	B	B	B	B	B	B	A	B	A	A	B	-	-	-	A	B	A	B	A	B	B	-	-	B	B	-	-	A	A	B	B	-	B	A	A	B	A
RosBREEDSNP_SNP_TC_35144180_Lg2_86472__86472_exon2	A	B	B	B	A	A	B	B	-	A	B	-	-	B	B	A	A	A	B	A	-	-	B	B	B	B	-	A	B	-	B	B	B	B	-	-	-	-	-	-	A	B	A	B	A	B	B	A	A	B	A	A

Alignments

Feature Name	Type	Location	Analysis
Chr09	chromosome	Chr09:21587952..22429227.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation